, including all inherited members.
| add_to_normal(int32_t vector_idx, float64_t weight) | CKernel | [virtual] |
| cache_kernel_row(int32_t x) | CKernel | |
| cache_multiple_kernel_rows(int32_t *key, int32_t varnum) | CKernel | |
| cache_reset() | CKernel | |
| cache_size | CKernel | [protected] |
| CKernel() | CKernel | |
| CKernel(int32_t size) | CKernel | |
| CKernel(CFeatures *l, CFeatures *r, int32_t size) | CKernel | |
| cleanup() | COligoStringKernel | [virtual] |
| clear_normal() | CKernel | [virtual] |
| COligoStringKernel(void) | COligoStringKernel | |
| COligoStringKernel(int32_t cache_size, int32_t k, float64_t width) | COligoStringKernel | |
| combined_kernel_weight | CKernel | [protected] |
| compute(int32_t x, int32_t y) | COligoStringKernel | [virtual] |
| compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0) | CKernel | [virtual] |
| compute_by_subkernel(int32_t vector_idx, float64_t *subkernel_contrib) | CKernel | [virtual] |
| compute_optimized(int32_t vector_idx) | CKernel | [virtual] |
| compute_row_start(int64_t offs, int32_t n, bool symmetric) | CKernel | [protected] |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| CStringKernel(int32_t cachesize=0) | CStringKernel< char > | |
| CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< char > | |
| delete_optimization() | CKernel | [virtual] |
| encodeOligo(const std::string &sequence, uint32_t k_mer_length, const std::string &allowed_characters, std::vector< std::pair< int32_t, float64_t > > &values) | COligoStringKernel | [protected, static] |
| gauss_table | COligoStringKernel | [protected] |
| gauss_table_len | COligoStringKernel | [protected] |
| get_activenum_cache() | CKernel | |
| get_cache_size() | CKernel | |
| get_combined_kernel_weight() | CKernel | |
| get_feature_class() | CStringKernel< char > | [virtual] |
| get_feature_type() | CStringKernel< char > | [virtual] |
| get_io() | CSGObject | |
| get_is_initialized() | CKernel | |
| get_kernel_col(int32_t j) | CKernel | [virtual] |
| get_kernel_matrix(float64_t **dst, int32_t *m, int32_t *n) | CKernel | |
| get_kernel_matrix(int32_t &m, int32_t &n, T *target) | CKernel | |
| get_kernel_matrix_helper(void *p) | CKernel | [protected, static] |
| get_kernel_row(int32_t i) | CKernel | [virtual] |
| get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false) | CKernel | |
| get_kernel_type() | COligoStringKernel | [virtual] |
| get_lhs() | CKernel | |
| get_lhs_equals_rhs() | CKernel | |
| get_max_elems_cache() | CKernel | |
| get_name() const | COligoStringKernel | [virtual] |
| get_normalizer() | CKernel | [virtual] |
| get_num_subkernels() | CKernel | [virtual] |
| get_num_vec_lhs() | CKernel | [virtual] |
| get_num_vec_rhs() | CKernel | [virtual] |
| get_optimization_type() | CKernel | |
| get_parallel() | CSGObject | |
| get_rhs() | CKernel | |
| get_subkernel_weights(int32_t &num_weights) | CKernel | [virtual] |
| get_version() | CSGObject | |
| getSequences(const std::vector< std::string > &sequences, uint32_t k_mer_length, const std::string &allowed_characters, std::vector< std::vector< std::pair< int32_t, float64_t > > > &encoded_sequences) | COligoStringKernel | [protected, static] |
| has_features() | CKernel | [virtual] |
| has_property(EKernelProperty p) | CKernel | |
| init(CFeatures *l, CFeatures *r) | COligoStringKernel | [virtual] |
| init_normalizer() | CKernel | [virtual] |
| init_optimization(int32_t count, int32_t *IDX, float64_t *weights) | CKernel | [virtual] |
| init_optimization_svm(CSVM *svm) | CKernel | |
| io | CSGObject | |
| is_generic(EPrimitiveType *generic) const | CSGObject | [virtual] |
| k | COligoStringKernel | [protected] |
| kernel(int32_t idx_a, int32_t idx_b) | CKernel | |
| kernel_cache | CKernel | [protected] |
| kernel_cache_check(int32_t cacheidx) | CKernel | |
| kernel_cache_cleanup() | CKernel | |
| kernel_cache_init(int32_t size, bool regression_hack=false) | CKernel | |
| kernel_cache_reset_lru() | CKernel | |
| kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after) | CKernel | |
| kernel_cache_space_available() | CKernel | |
| kernel_cache_touch(int32_t cacheidx) | CKernel | |
| kernel_matrix | CKernel | [protected] |
| kernelOligoFast(const std::vector< std::pair< int32_t, float64_t > > &x, const std::vector< std::pair< int32_t, float64_t > > &y, int32_t max_distance=-1) | COligoStringKernel | [protected] |
| lhs | CKernel | [protected] |
| lhs_equals_rhs | CKernel | [protected] |
| list_kernel() | CKernel | |
| load(CFile *loader) | CKernel | |
| load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | [virtual] |
| load_serializable_post() | CKernel | [protected, virtual] |
| load_serializable_pre() | CSGObject | [protected, virtual] |
| m_parameters | CSGObject | [protected] |
| normalizer | CKernel | [protected] |
| num_lhs | CKernel | [protected] |
| num_rhs | CKernel | [protected] |
| opt_type | CKernel | [protected] |
| optimization_initialized | CKernel | [protected] |
| parallel | CSGObject | |
| print_serializable(const char *prefix="") | CSGObject | [virtual] |
| properties | CKernel | [protected] |
| remove_lhs() | CKernel | [virtual] |
| remove_lhs_and_rhs() | CKernel | [virtual] |
| remove_rhs() | CKernel | [virtual] |
| resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false) | CKernel | |
| rhs | CKernel | [protected] |
| save(CFile *writer) | CKernel | |
| save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | [virtual] |
| save_serializable_post() | CKernel | [protected, virtual] |
| save_serializable_pre() | CKernel | [protected, virtual] |
| set_cache_size(int32_t size) | CKernel | |
| set_combined_kernel_weight(float64_t nw) | CKernel | |
| set_generic() | CSGObject | |
| set_io(IO *io) | CSGObject | |
| set_is_initialized(bool p_init) | CKernel | [protected] |
| set_normalizer(CKernelNormalizer *normalizer) | CKernel | [virtual] |
| set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
| set_parallel(Parallel *parallel) | CSGObject | |
| set_property(EKernelProperty p) | CKernel | [protected] |
| set_subkernel_weights(float64_t *weights, int32_t num_weights) | CKernel | [virtual] |
| set_time(int32_t t) | CKernel | |
| set_version(Version *version) | CSGObject | |
| unset_generic() | CSGObject | |
| unset_property(EKernelProperty p) | CKernel | [protected] |
| version | CSGObject | |
| width | COligoStringKernel | [protected] |
| ~CKernel() | CKernel | [virtual] |
| ~COligoStringKernel() | COligoStringKernel | [virtual] |
| ~CSGObject() | CSGObject | [virtual] |
