CAlphabet Member List

This is the complete list of members for CAlphabet, including all inherited members.
add_byte_to_histogram(uint8_t p)CAlphabet
add_string_to_histogram(T *p, int64_t len)CAlphabet
alphabetCAlphabet [protected]
alphabet_namesCAlphabet [static]
B_0CAlphabet [static]
B_ACAlphabet [static]
B_CCAlphabet [static]
B_GCAlphabet [static]
B_TCAlphabet [static]
CAlphabet()CAlphabet
CAlphabet(char *alpha, int32_t len)CAlphabet
CAlphabet(EAlphabet alpha)CAlphabet
CAlphabet(CAlphabet *alpha)CAlphabet
check_alphabet(bool print_error=true)CAlphabet
check_alphabet_size(bool print_error=true)CAlphabet
clear_histogram()CAlphabet
copy_histogram(CAlphabet *src)CAlphabet [protected]
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
get_alphabet() const CAlphabet
get_alphabet_name(EAlphabet alphabet)CAlphabet [static]
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_hist(int64_t **h, int32_t *len)CAlphabet
get_histogram()CAlphabet
get_max_value_in_histogram()CAlphabet
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CAlphabet [virtual]
get_num_bits() const CAlphabet
get_num_bits_in_histogram()CAlphabet
get_num_symbols() const CAlphabet
get_num_symbols_in_histogram()CAlphabet
histogramCAlphabet [protected]
init_map_table()CAlphabet [protected]
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObject [virtual]
is_valid(uint8_t c)CAlphabet
load_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
load_serializable_post(void)CAlphabet [protected, virtual]
load_serializable_pre()CSGObject [protected, virtual]
m_model_selection_parametersCSGObject
m_parametersCSGObject
maptable_to_binCAlphabet [protected]
maptable_to_charCAlphabet [protected]
MAPTABLE_UNDEFCAlphabet [static]
num_bitsCAlphabet [protected]
num_symbolsCAlphabet [protected]
parallelCSGObject
print_histogram()CAlphabet
print_serializable(const char *prefix="")CSGObject [virtual]
remap_to_bin(uint8_t c)CAlphabet
remap_to_char(uint8_t c)CAlphabet
save_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
save_serializable_post()CSGObject [protected, virtual]
save_serializable_pre()CSGObject [protected, virtual]
set_alphabet(EAlphabet alpha)CAlphabet
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
translate_from_single_order(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val)CAlphabet [static]
translate_from_single_order(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet [static]
translate_from_single_order_reversed(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val)CAlphabet [static]
translate_from_single_order_reversed(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet [static]
unset_generic()CSGObject
valid_charsCAlphabet [protected]
versionCSGObject
~CAlphabet()CAlphabet [virtual]
~CSGObject()CSGObject [virtual]
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