CHMM Member List

This is the complete list of members for CHMM, including all inherited members.
add_states(int32_t num_states, float64_t default_val=0)CHMM
all_pat_probCHMM [protected]
all_path_prob_updatedCHMM [protected]
alloc_state_dependend_arrays()CHMM
alpha_cacheCHMM [protected]
append_model(CHMM *append_model, float64_t *cur_out, float64_t *app_out)CHMM
append_model(CHMM *append_model)CHMM
arrayN1CHMM [protected]
arrayN2CHMM [protected]
backward(int32_t time, int32_t state, int32_t dimension)CHMM [protected]
backward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
backward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
baum_welch_viterbi_train(BaumWelchViterbiType type)CHMM
best_path(int32_t dimension)CHMM
beta_cacheCHMM [protected]
CDistribution()CDistribution
check_model_derivatives()CHMM
check_model_derivatives_combined()CHMM
CHMM(void)CHMM
CHMM(int32_t N, int32_t M, Model *model, float64_t PSEUDO)CHMM
CHMM(CStringFeatures< uint16_t > *obs, int32_t N, int32_t M, float64_t PSEUDO)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, float64_t *a)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, int32_t num_trans, float64_t *a_trans)CHMM
CHMM(FILE *model_file, float64_t PSEUDO)CHMM
CHMM(CHMM *h)CHMM
chop(float64_t value)CHMM
clear_model()CHMM
clear_model_defined()CHMM
close_bracket(FILE *file)CHMM [protected]
comma_or_space(FILE *file)CHMM [protected]
conv_itCHMM [protected]
convert_to_log()CHMM
copy_model(CHMM *l)CHMM
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
end_state_distribution_qCHMM [protected]
epsilonCHMM [protected]
error(int32_t p_line, const char *str)CHMM [protected]
estimate_model_baum_welch(CHMM *train)CHMM
estimate_model_baum_welch_defined(CHMM *train)CHMM
estimate_model_baum_welch_old(CHMM *train)CHMM
estimate_model_baum_welch_trans(CHMM *train)CHMM
estimate_model_viterbi(CHMM *train)CHMM
estimate_model_viterbi_defined(CHMM *train)CHMM
featuresCDistribution [protected]
forward(int32_t time, int32_t state, int32_t dimension)CHMM [protected]
forward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
forward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
free_state_dependend_arrays()CHMM
get_A(T_STATES line_, T_STATES column) const CHMM
get_a(T_STATES line_, T_STATES column) const CHMM
get_B(T_STATES line_, uint16_t column) const CHMM
get_b(T_STATES line_, uint16_t column) const CHMM
get_best_path_state(int32_t dim, int32_t t)CHMM
get_derivative(int32_t num_param, int32_t num_example)CDistribution [virtual]
get_epsilon()CHMM
get_features()CDistribution [virtual]
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_iterations()CHMM
get_likelihood_example(int32_t num_example)CDistribution [virtual]
get_log_derivative(int32_t num_param, int32_t num_example)CHMM [virtual]
get_log_likelihood()CDistribution [virtual]
get_log_likelihood_example(int32_t num_example)CHMM [virtual]
get_log_likelihood_sample()CDistribution [virtual]
get_log_model_parameter(int32_t num_param)CHMM [virtual]
get_M() const CHMM
get_model_parameter(int32_t num_param)CDistribution [virtual]
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_N() const CHMM
get_name() const CHMM [virtual]
get_num_model_parameters()CHMM [virtual]
get_num_relevant_model_parameters()CDistribution [virtual]
get_numbuffer(FILE *file, char *buffer, int32_t length)CHMM [protected]
get_observations()CHMM
get_p(T_STATES offset) const CHMM
get_path(int32_t dim, float64_t &prob)CHMM
get_pseudo() const CHMM
get_pseudo_count()CDistribution [virtual]
get_psi(int32_t time, T_STATES state, int32_t dimension) const CHMM
get_q(T_STATES offset) const CHMM
get_status() const CHMM
GOTaCHMM [protected, static]
GOTbCHMM [protected, static]
GOTconst_aCHMM [protected, static]
GOTconst_bCHMM [protected, static]
GOTconst_pCHMM [protected, static]
GOTconst_qCHMM [protected, static]
GOTlearn_aCHMM [protected, static]
GOTlearn_bCHMM [protected, static]
GOTlearn_pCHMM [protected, static]
GOTlearn_qCHMM [protected, static]
GOTMCHMM [protected, static]
GOTNCHMM [protected, static]
GOTOCHMM [protected, static]
GOTpCHMM [protected, static]
GOTqCHMM [protected, static]
init_model_defined()CHMM
init_model_random()CHMM
initial_state_distribution_pCHMM [protected]
initialize(Model *model, float64_t PSEUDO, FILE *model_file=NULL)CHMM
invalidate_model()CHMM
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObject [virtual]
iteration_countCHMM [protected]
iterationsCHMM [protected]
lineCHMM [protected]
linear_model_derivative(T_STATES i, uint16_t j, int32_t dimension)CHMM
linear_model_probability(int32_t dimension)CHMM
linear_train(bool right_align=false)CHMM
load_definitions(FILE *file, bool verbose, bool initialize=true)CHMM
load_model(FILE *file)CHMM
load_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
load_serializable_post()CSGObject [protected, virtual]
load_serializable_pre()CSGObject [protected, virtual]
loglikelihoodCHMM [protected]
MCHMM [protected]
m_model_selection_parametersCSGObject
m_parametersCSGObject
mod_probCHMM [protected]
mod_prob_updatedCHMM [protected]
modelCHMM [protected]
model_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
model_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
model_derivative_p(T_STATES i, int32_t dimension)CHMM
model_derivative_q(T_STATES i, int32_t dimension)CHMM
model_probability(int32_t dimension=-1)CHMM
model_probability_comp()CHMM
NCHMM [protected]
normalize(bool keep_dead_states=false)CHMM
observation_matrix_bCHMM [protected]
observation_matrix_BCHMM [protected]
open_bracket(FILE *file)CHMM [protected]
output_model(bool verbose=false)CHMM
output_model_defined(bool verbose=false)CHMM
p_observationsCHMM [protected]
parallelCSGObject
pat_probCHMM [protected]
pathCHMM [protected]
path_deriv_dimensionCHMM [protected]
path_deriv_updatedCHMM [protected]
path_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
path_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
path_derivative_p(T_STATES i, int32_t dimension)CHMM
path_derivative_q(T_STATES i, int32_t dimension)CHMM
path_prob_dimensionCHMM [protected]
path_prob_updatedCHMM [protected]
permutation_entropy(int32_t window_width, int32_t sequence_number)CHMM
prepare_path_derivative(int32_t dim)CHMM [protected]
print_serializable(const char *prefix="")CSGObject [virtual]
PSEUDOCHMM [protected]
pseudo_countCDistribution [protected]
reused_cachesCHMM [protected]
save_likelihood(FILE *file)CHMM
save_likelihood_bin(FILE *file)CHMM
save_model(FILE *file)CHMM
save_model_bin(FILE *file)CHMM
save_model_derivatives(FILE *file)CHMM
save_model_derivatives_bin(FILE *file)CHMM
save_path(FILE *file)CHMM
save_path_derivatives(FILE *file)CHMM
save_path_derivatives_bin(FILE *file)CHMM
save_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
save_serializable_post()CSGObject [protected, virtual]
save_serializable_pre()CSGObject [protected, virtual]
set_A(T_STATES line_, T_STATES column, float64_t value)CHMM
set_a(T_STATES line_, T_STATES column, float64_t value)CHMM
set_B(T_STATES line_, uint16_t column, float64_t value)CHMM
set_b(T_STATES line_, uint16_t column, float64_t value)CHMM
set_epsilon(float64_t eps)CHMM
set_features(CFeatures *f)CDistribution [virtual]
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_iterations(int32_t num)CHMM
set_observation_nocache(CStringFeatures< uint16_t > *obs)CHMM
set_observations(CStringFeatures< uint16_t > *obs, CHMM *hmm=NULL)CHMM
set_p(T_STATES offset, float64_t value)CHMM
set_pseudo(float64_t pseudo)CHMM
set_pseudo_count(float64_t pseudo)CDistribution [virtual]
set_psi(int32_t time, T_STATES state, T_STATES value, int32_t dimension)CHMM
set_q(T_STATES offset, float64_t value)CHMM
state_probability(int32_t time, int32_t state, int32_t dimension)CHMM
states_per_observation_psiCHMM [protected]
statusCHMM [protected]
train(CFeatures *data=NULL)CHMM [virtual]
transition_matrix_aCHMM [protected]
transition_matrix_ACHMM [protected]
transition_probability(int32_t time, int32_t state_i, int32_t state_j, int32_t dimension)CHMM
unset_generic()CSGObject
versionCSGObject
~CDistribution()CDistribution [virtual]
~CHMM()CHMM [virtual]
~CSGObject()CSGObject [virtual]
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SHOGUN Machine Learning Toolbox - Documentation