, including all inherited members.
| AA_helper(const char *path, const int degree, const char *joint_seq, unsigned int index) | CSpectrumRBFKernel | [protected] |
| AA_matrix | CSpectrumRBFKernel | [protected] |
| AA_matrix_length | CSpectrumRBFKernel | [protected] |
| add_to_normal(int32_t vector_idx, float64_t weight) | CKernel | [virtual] |
| alphabet | CSpectrumRBFKernel | [protected] |
| cache_kernel_row(int32_t x) | CKernel | |
| cache_multiple_kernel_rows(int32_t *key, int32_t varnum) | CKernel | |
| cache_reset() | CKernel | |
| cache_size | CKernel | [protected] |
| CKernel() | CKernel | |
| CKernel(int32_t size) | CKernel | |
| CKernel(CFeatures *l, CFeatures *r, int32_t size) | CKernel | |
| cleanup() | CSpectrumRBFKernel | [virtual] |
| clear_normal() | CKernel | [virtual] |
| combined_kernel_weight | CKernel | [protected] |
| compute(int32_t idx_a, int32_t idx_b) | CSpectrumRBFKernel | [protected, virtual] |
| compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0) | CKernel | [virtual] |
| compute_by_subkernel(int32_t vector_idx, float64_t *subkernel_contrib) | CKernel | [virtual] |
| compute_optimized(int32_t vector_idx) | CKernel | [virtual] |
| compute_row_start(int64_t offs, int32_t n, bool symmetric) | CKernel | [protected] |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| CSpectrumRBFKernel(void) | CSpectrumRBFKernel | |
| CSpectrumRBFKernel(int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width) | CSpectrumRBFKernel | |
| CSpectrumRBFKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width) | CSpectrumRBFKernel | |
| CStringKernel(int32_t cachesize=0) | CStringKernel< char > | |
| CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< char > | |
| degree | CSpectrumRBFKernel | [protected] |
| delete_optimization() | CKernel | [virtual] |
| get_activenum_cache() | CKernel | |
| get_cache_size() | CKernel | |
| get_combined_kernel_weight() | CKernel | |
| get_degree() const | CSpectrumRBFKernel | |
| get_degree() | CSpectrumRBFKernel | |
| get_feature_class() | CStringKernel< char > | [virtual] |
| get_feature_type() | CStringKernel< char > | [virtual] |
| get_global_io() | CSGObject | |
| get_global_parallel() | CSGObject | |
| get_global_version() | CSGObject | |
| get_is_initialized() | CKernel | |
| get_kernel_col(int32_t j) | CKernel | [virtual] |
| get_kernel_matrix() | CKernel | |
| get_kernel_matrix() | CKernel | |
| get_kernel_matrix_helper(void *p) | CKernel | [protected, static] |
| get_kernel_row(int32_t i) | CKernel | [virtual] |
| get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false) | CKernel | |
| get_kernel_type() | CSpectrumRBFKernel | [virtual] |
| get_lhs() | CKernel | |
| get_lhs_equals_rhs() | CKernel | |
| get_max_elems_cache() | CKernel | |
| get_modelsel_names() | CSGObject | |
| get_modsel_param_descr(const char *param_name) | CSGObject | |
| get_modsel_param_index(const char *param_name) | CSGObject | |
| get_name() const | CSpectrumRBFKernel | [virtual] |
| get_normalizer() | CKernel | [virtual] |
| get_num_subkernels() | CKernel | [virtual] |
| get_num_vec_lhs() | CKernel | [virtual] |
| get_num_vec_rhs() | CKernel | [virtual] |
| get_optimization_type() | CKernel | |
| get_rhs() | CKernel | |
| get_subkernel_weights(int32_t &num_weights) | CKernel | [virtual] |
| has_features() | CKernel | [virtual] |
| has_property(EKernelProperty p) | CKernel | |
| init(CFeatures *l, CFeatures *r) | CSpectrumRBFKernel | [virtual] |
| init_normalizer() | CKernel | [virtual] |
| init_optimization(int32_t count, int32_t *IDX, float64_t *weights) | CKernel | [virtual] |
| init_optimization_svm(CSVM *svm) | CKernel | |
| initialized | CSpectrumRBFKernel | [protected] |
| io | CSGObject | |
| is_generic(EPrimitiveType *generic) const | CSGObject | [virtual] |
| kernel(int32_t idx_a, int32_t idx_b) | CKernel | |
| kernel_cache | CKernel | [protected] |
| kernel_cache_check(int32_t cacheidx) | CKernel | |
| kernel_cache_cleanup() | CKernel | |
| kernel_cache_init(int32_t size, bool regression_hack=false) | CKernel | |
| kernel_cache_reset_lru() | CKernel | |
| kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after) | CKernel | |
| kernel_cache_space_available() | CKernel | |
| kernel_cache_touch(int32_t cacheidx) | CKernel | |
| kernel_matrix | CSpectrumRBFKernel | [protected] |
| lhs | CKernel | [protected] |
| lhs_equals_rhs | CKernel | [protected] |
| list_kernel() | CKernel | |
| load(CFile *loader) | CKernel | |
| load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | [virtual] |
| load_serializable_post() | CKernel | [protected, virtual] |
| load_serializable_pre() | CSGObject | [protected, virtual] |
| m_model_selection_parameters | CSGObject | |
| m_parameters | CSGObject | |
| max_mismatch | CSpectrumRBFKernel | [protected] |
| max_sequence_length | CSpectrumRBFKernel | [protected] |
| nof_sequences | CSpectrumRBFKernel | [protected] |
| normalizer | CKernel | [protected] |
| num_lhs | CKernel | [protected] |
| num_rhs | CKernel | [protected] |
| opt_type | CKernel | [protected] |
| optimization_initialized | CKernel | [protected] |
| parallel | CSGObject | |
| print_serializable(const char *prefix="") | CSGObject | [virtual] |
| profiles | CSpectrumRBFKernel | [protected] |
| properties | CKernel | [protected] |
| read_profiles_and_sequences() | CSpectrumRBFKernel | [protected] |
| register_alphabet() | CSpectrumRBFKernel | [protected] |
| register_param() | CSpectrumRBFKernel | [protected, virtual] |
| register_params() | CKernel | [protected, virtual] |
| remove_lhs() | CSpectrumRBFKernel | [protected, virtual] |
| remove_lhs_and_rhs() | CKernel | [virtual] |
| remove_rhs() | CKernel | [virtual] |
| resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false) | CKernel | |
| rhs | CKernel | [protected] |
| save(CFile *writer) | CKernel | |
| save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | [virtual] |
| save_serializable_post() | CKernel | [protected, virtual] |
| save_serializable_pre() | CKernel | [protected, virtual] |
| sequence_labels | CSpectrumRBFKernel | [protected] |
| sequences | CSpectrumRBFKernel | [protected] |
| set_AA_matrix(float64_t *AA_matrix_) | CSpectrumRBFKernel | |
| set_cache_size(int32_t size) | CKernel | |
| set_combined_kernel_weight(float64_t nw) | CKernel | |
| set_degree(int32_t deg) | CSpectrumRBFKernel | |
| set_generic() | CSGObject | |
| set_global_io(SGIO *io) | CSGObject | |
| set_global_parallel(Parallel *parallel) | CSGObject | |
| set_global_version(Version *version) | CSGObject | |
| set_is_initialized(bool p_init) | CKernel | [protected] |
| set_normalizer(CKernelNormalizer *normalizer) | CKernel | [virtual] |
| set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
| set_property(EKernelProperty p) | CKernel | [protected] |
| set_subkernel_weights(float64_t *weights, int32_t num_weights) | CKernel | [virtual] |
| set_time(int32_t t) | CKernel | |
| string_features | CSpectrumRBFKernel | [protected] |
| target_letter_0 | CSpectrumRBFKernel | [protected] |
| unset_generic() | CSGObject | |
| unset_property(EKernelProperty p) | CKernel | [protected] |
| version | CSGObject | |
| width | CSpectrumRBFKernel | [protected] |
| ~CKernel() | CKernel | [virtual] |
| ~CSGObject() | CSGObject | [virtual] |
| ~CSpectrumRBFKernel() | CSpectrumRBFKernel | [virtual] |
