BrayCurtisDistance.cpp

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00001 /*
00002  * This program is free software; you can redistribute it and/or modify
00003  * it under the terms of the GNU General Public License as published by
00004  * the Free Software Foundation; either version 3 of the License, or
00005  * (at your option) any later version.
00006  *
00007  * Written (W) 2008-2009 Christian Gehl
00008  * Copyright (C) 2008-2009 Fraunhofer Institute FIRST
00009  */
00010 
00011 #include <shogun/lib/config.h>
00012 #include <shogun/lib/common.h>
00013 #include <shogun/io/SGIO.h>
00014 #include <shogun/distance/BrayCurtisDistance.h>
00015 #include <shogun/features/Features.h>
00016 #include <shogun/features/SimpleFeatures.h>
00017 
00018 using namespace shogun;
00019 
00020 CBrayCurtisDistance::CBrayCurtisDistance()
00021 : CSimpleDistance<float64_t>()
00022 {
00023 }
00024 
00025 CBrayCurtisDistance::CBrayCurtisDistance(CSimpleFeatures<float64_t>* l, CSimpleFeatures<float64_t>* r)
00026 : CSimpleDistance<float64_t>()
00027 {
00028     init(l, r);
00029 }
00030 
00031 CBrayCurtisDistance::~CBrayCurtisDistance()
00032 {
00033     cleanup();
00034 }
00035 
00036 bool CBrayCurtisDistance::init(CFeatures* l, CFeatures* r)
00037 {
00038     bool result=CSimpleDistance<float64_t>::init(l,r);
00039 
00040     return result;
00041 }
00042 
00043 void CBrayCurtisDistance::cleanup()
00044 {
00045 }
00046 
00047 float64_t CBrayCurtisDistance::compute(int32_t idx_a, int32_t idx_b)
00048 {
00049     int32_t alen, blen;
00050     bool afree, bfree;
00051 
00052     float64_t* avec=
00053         ((CSimpleFeatures<float64_t>*) lhs)->get_feature_vector(idx_a, alen, afree);
00054     float64_t* bvec=
00055         ((CSimpleFeatures<float64_t>*) rhs)->get_feature_vector(idx_b, blen, bfree);
00056 
00057     ASSERT(alen==blen);
00058 
00059     float64_t s1=0;
00060     float64_t s2=0;
00061     {
00062         for (int32_t i=0; i<alen; i++)
00063         {
00064             s1+=fabs(avec[i]-bvec[i]);
00065             s2+=fabs(avec[i]+bvec[i]);
00066         }
00067     }
00068 
00069     ((CSimpleFeatures<float64_t>*) lhs)->free_feature_vector(avec, idx_a, afree);
00070     ((CSimpleFeatures<float64_t>*) rhs)->free_feature_vector(bvec, idx_b, bfree);
00071     
00072     // trap division by zero
00073     if(s2==0)
00074         return 0;
00075 
00076     return (s1/s2);
00077 }
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