CSpectrumRBFKernel Member List

This is the complete list of members for CSpectrumRBFKernel, including all inherited members.
AA_helper(const char *path, const int degree, const char *joint_seq, unsigned int index)CSpectrumRBFKernel [protected]
AA_matrixCSpectrumRBFKernel [protected]
AA_matrix_lengthCSpectrumRBFKernel [protected]
add_to_normal(int32_t vector_idx, float64_t weight)CKernel [virtual]
alphabetCSpectrumRBFKernel [protected]
cache_kernel_row(int32_t x)CKernel
cache_multiple_kernel_rows(int32_t *key, int32_t varnum)CKernel
cache_reset()CKernel
cache_sizeCKernel [protected]
CKernel()CKernel
CKernel(int32_t size)CKernel
CKernel(CFeatures *l, CFeatures *r, int32_t size)CKernel
cleanup()CSpectrumRBFKernel [virtual]
clear_normal()CKernel [virtual]
combined_kernel_weightCKernel [protected]
compute(int32_t idx_a, int32_t idx_b)CSpectrumRBFKernel [protected, virtual]
compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0)CKernel [virtual]
compute_by_subkernel(int32_t vector_idx, float64_t *subkernel_contrib)CKernel [virtual]
compute_optimized(int32_t vector_idx)CKernel [virtual]
compute_row_start(int64_t offs, int32_t n, bool symmetric)CKernel [protected]
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
CSpectrumRBFKernel()CSpectrumRBFKernel
CSpectrumRBFKernel(int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width)CSpectrumRBFKernel
CSpectrumRBFKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width)CSpectrumRBFKernel
CStringKernel(int32_t cachesize=0)CStringKernel< char >
CStringKernel(CFeatures *l, CFeatures *r)CStringKernel< char >
degreeCSpectrumRBFKernel [protected]
delete_optimization()CKernel [virtual]
get_activenum_cache()CKernel
get_cache_size()CKernel
get_combined_kernel_weight()CKernel
get_degree() const CSpectrumRBFKernel
get_degree()CSpectrumRBFKernel
get_feature_class()CStringKernel< char > [virtual]
get_feature_type()CStringKernel< char > [virtual]
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_is_initialized()CKernel
get_kernel_col(int32_t j)CKernel [virtual]
get_kernel_matrix()CKernel
get_kernel_matrix()CKernel
get_kernel_matrix_helper(void *p)CKernel [protected, static]
get_kernel_row(int32_t i)CKernel [virtual]
get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false)CKernel
get_kernel_type()CSpectrumRBFKernel [virtual]
get_lhs()CKernel
get_lhs_equals_rhs()CKernel
get_max_elems_cache()CKernel
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CSpectrumRBFKernel [virtual]
get_normalizer()CKernel [virtual]
get_num_subkernels()CKernel [virtual]
get_num_vec_lhs()CKernel [virtual]
get_num_vec_rhs()CKernel [virtual]
get_optimization_type()CKernel
get_rhs()CKernel
get_subkernel_weights(int32_t &num_weights)CKernel [virtual]
has_features()CKernel [virtual]
has_property(EKernelProperty p)CKernel
init(CFeatures *l, CFeatures *r)CSpectrumRBFKernel [virtual]
init_normalizer()CKernel [virtual]
init_optimization(int32_t count, int32_t *IDX, float64_t *weights)CKernel [virtual]
init_optimization_svm(CSVM *svm)CKernel
initializedCSpectrumRBFKernel [protected]
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObject [virtual]
kernel(int32_t idx_a, int32_t idx_b)CKernel
kernel_cacheCKernel [protected]
kernel_cache_check(int32_t cacheidx)CKernel
kernel_cache_cleanup()CKernel
kernel_cache_init(int32_t size, bool regression_hack=false)CKernel
kernel_cache_reset_lru()CKernel
kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after)CKernel
kernel_cache_space_available()CKernel
kernel_cache_touch(int32_t cacheidx)CKernel
kernel_matrixCSpectrumRBFKernel [protected]
lhsCKernel [protected]
lhs_equals_rhsCKernel [protected]
list_kernel()CKernel
load(CFile *loader)CKernel
load_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
load_serializable_post()CKernel [protected, virtual]
load_serializable_pre()CSGObject [protected, virtual]
m_model_selection_parametersCSGObject
m_parametersCSGObject
max_mismatchCSpectrumRBFKernel [protected]
max_sequence_lengthCSpectrumRBFKernel [protected]
nof_sequencesCSpectrumRBFKernel [protected]
normalizerCKernel [protected]
num_lhsCKernel [protected]
num_rhsCKernel [protected]
opt_typeCKernel [protected]
optimization_initializedCKernel [protected]
parallelCSGObject
print_serializable(const char *prefix="")CSGObject [virtual]
profilesCSpectrumRBFKernel [protected]
propertiesCKernel [protected]
read_profiles_and_sequences()CSpectrumRBFKernel [protected]
register_alphabet()CSpectrumRBFKernel [protected]
register_param()CSpectrumRBFKernel [protected, virtual]
register_params()CKernel [protected, virtual]
remove_lhs()CSpectrumRBFKernel [protected, virtual]
remove_lhs_and_rhs()CKernel [virtual]
remove_rhs()CKernel [virtual]
resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false)CKernel
rhsCKernel [protected]
save(CFile *writer)CKernel
save_serializable(CSerializableFile *file, const char *prefix="")CSGObject [virtual]
save_serializable_post()CKernel [protected, virtual]
save_serializable_pre()CKernel [protected, virtual]
sequence_labelsCSpectrumRBFKernel [protected]
sequencesCSpectrumRBFKernel [protected]
set_AA_matrix(float64_t *AA_matrix_)CSpectrumRBFKernel
set_cache_size(int32_t size)CKernel
set_combined_kernel_weight(float64_t nw)CKernel
set_degree(int32_t deg)CSpectrumRBFKernel
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_is_initialized(bool p_init)CKernel [protected]
set_normalizer(CKernelNormalizer *normalizer)CKernel [virtual]
set_optimization_type(EOptimizationType t)CKernel [virtual]
set_property(EKernelProperty p)CKernel [protected]
set_subkernel_weights(SGVector< float64_t > weights)CKernel [virtual]
set_time(int32_t t)CKernel
string_featuresCSpectrumRBFKernel [protected]
target_letter_0CSpectrumRBFKernel [protected]
unset_generic()CSGObject
unset_property(EKernelProperty p)CKernel [protected]
versionCSGObject
widthCSpectrumRBFKernel [protected]
~CKernel()CKernel [virtual]
~CSGObject()CSGObject [virtual]
~CSpectrumRBFKernel()CSpectrumRBFKernel [virtual]
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