SHOGUN  v2.0.0
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
CHMM Member List

This is the complete list of members for CHMM, including all inherited members.

add_states(int32_t num_states, float64_t default_val=0)CHMM
all_pat_probCHMMprotected
all_path_prob_updatedCHMMprotected
alloc_state_dependend_arrays()CHMM
alpha_cacheCHMMprotected
append_model(CHMM *append_model, float64_t *cur_out, float64_t *app_out)CHMM
append_model(CHMM *append_model)CHMM
arrayN1CHMMprotected
arrayN2CHMMprotected
backward(int32_t time, int32_t state, int32_t dimension)CHMMprotected
backward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
backward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
baum_welch_viterbi_train(BaumWelchViterbiType type)CHMM
best_path(int32_t dimension)CHMM
beta_cacheCHMMprotected
build_parameter_dictionary(CMap< TParameter *, CSGObject * > &dict)CSGObject
CDistribution()CDistribution
check_model_derivatives()CHMM
check_model_derivatives_combined()CHMM
CHMM()CHMM
CHMM(int32_t N, int32_t M, Model *model, float64_t PSEUDO)CHMM
CHMM(CStringFeatures< uint16_t > *obs, int32_t N, int32_t M, float64_t PSEUDO)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, float64_t *a)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, int32_t num_trans, float64_t *a_trans)CHMM
CHMM(FILE *model_file, float64_t PSEUDO)CHMM
CHMM(CHMM *h)CHMM
chop(float64_t value)CHMM
clear_model()CHMM
clear_model_defined()CHMM
close_bracket(FILE *file)CHMMprotected
comma_or_space(FILE *file)CHMMprotected
conv_itCHMMprotected
convert_to_log()CHMM
copy_model(CHMM *l)CHMM
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() const CSGObjectvirtual
end_state_distribution_qCHMMprotected
epsilonCHMMprotected
error(int32_t p_line, const char *str)CHMMprotected
estimate_model_baum_welch(CHMM *train)CHMM
estimate_model_baum_welch_defined(CHMM *train)CHMM
estimate_model_baum_welch_old(CHMM *train)CHMM
estimate_model_baum_welch_trans(CHMM *train)CHMM
estimate_model_viterbi(CHMM *train)CHMM
estimate_model_viterbi_defined(CHMM *train)CHMM
featuresCDistributionprotected
forward(int32_t time, int32_t state, int32_t dimension)CHMMprotected
forward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
forward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
free_state_dependend_arrays()CHMM
get_A(T_STATES line_, T_STATES column) const CHMM
get_a(T_STATES line_, T_STATES column) const CHMM
get_B(T_STATES line_, uint16_t column) const CHMM
get_b(T_STATES line_, uint16_t column) const CHMM
get_best_path_state(int32_t dim, int32_t t)CHMM
get_derivative(int32_t num_param, int32_t num_example)CDistributionvirtual
get_epsilon()CHMM
get_features()CDistributionvirtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_iterations()CHMM
get_likelihood_example(int32_t num_example)CDistributionvirtual
get_log_derivative(int32_t num_param, int32_t num_example)CHMMvirtual
get_log_likelihood()CDistributionvirtual
get_log_likelihood_example(int32_t num_example)CHMMvirtual
get_log_likelihood_sample()CDistributionvirtual
get_log_model_parameter(int32_t num_param)CHMMvirtual
get_M() const CHMM
get_model_parameter(int32_t num_param)CDistributionvirtual
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_N() const CHMM
get_name() const CHMMvirtual
get_num_model_parameters()CHMMvirtual
get_num_relevant_model_parameters()CDistributionvirtual
get_numbuffer(FILE *file, char *buffer, int32_t length)CHMMprotected
get_observations()CHMM
get_p(T_STATES offset) const CHMM
get_path(int32_t dim, float64_t &prob)CHMM
get_pseudo() const CHMM
get_pseudo_count()CDistributionvirtual
get_psi(int32_t time, T_STATES state, int32_t dimension) const CHMM
get_q(T_STATES offset) const CHMM
get_status() const CHMM
GOTaCHMMprotectedstatic
GOTbCHMMprotectedstatic
GOTconst_aCHMMprotectedstatic
GOTconst_bCHMMprotectedstatic
GOTconst_pCHMMprotectedstatic
GOTconst_qCHMMprotectedstatic
GOTlearn_aCHMMprotectedstatic
GOTlearn_bCHMMprotectedstatic
GOTlearn_pCHMMprotectedstatic
GOTlearn_qCHMMprotectedstatic
GOTMCHMMprotectedstatic
GOTNCHMMprotectedstatic
GOTOCHMMprotectedstatic
GOTpCHMMprotectedstatic
GOTqCHMMprotectedstatic
init_model_defined()CHMM
init_model_random()CHMM
initial_state_distribution_pCHMMprotected
initialize(Model *model, float64_t PSEUDO, FILE *model_file=NULL)CHMM
invalidate_model()CHMM
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
iteration_countCHMMprotected
iterationsCHMMprotected
lineCHMMprotected
linear_model_derivative(T_STATES i, uint16_t j, int32_t dimension)CHMM
linear_model_probability(int32_t dimension)CHMM
linear_train(bool right_align=false)CHMM
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_definitions(FILE *file, bool verbose, bool initialize=true)CHMM
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_model(FILE *file)CHMM
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER)CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
loglikelihoodCHMMprotected
MCHMMprotected
m_hashCSGObject
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
mod_probCHMMprotected
mod_prob_updatedCHMMprotected
modelCHMMprotected
model_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
model_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
model_derivative_p(T_STATES i, int32_t dimension)CHMM
model_derivative_q(T_STATES i, int32_t dimension)CHMM
model_probability(int32_t dimension=-1)CHMM
model_probability_comp()CHMM
NCHMMprotected
normalize(bool keep_dead_states=false)CHMM
observation_matrix_bCHMMprotected
observation_matrix_BCHMMprotected
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
open_bracket(FILE *file)CHMMprotected
output_model(bool verbose=false)CHMM
output_model_defined(bool verbose=false)CHMM
p_observationsCHMMprotected
parallelCSGObject
pat_probCHMMprotected
pathCHMMprotected
path_deriv_dimensionCHMMprotected
path_deriv_updatedCHMMprotected
path_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
path_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
path_derivative_p(T_STATES i, int32_t dimension)CHMM
path_derivative_q(T_STATES i, int32_t dimension)CHMM
path_prob_dimensionCHMMprotected
path_prob_updatedCHMMprotected
permutation_entropy(int32_t window_width, int32_t sequence_number)CHMM
prepare_path_derivative(int32_t dim)CHMMprotected
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
PSEUDOCHMMprotected
pseudo_countCDistributionprotected
reused_cachesCHMMprotected
save_likelihood(FILE *file)CHMM
save_likelihood_bin(FILE *file)CHMM
save_model(FILE *file)CHMM
save_model_bin(FILE *file)CHMM
save_model_derivatives(FILE *file)CHMM
save_model_derivatives_bin(FILE *file)CHMM
save_path(FILE *file)CHMM
save_path_derivatives(FILE *file)CHMM
save_path_derivatives_bin(FILE *file)CHMM
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER)CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_A(T_STATES line_, T_STATES column, float64_t value)CHMM
set_a(T_STATES line_, T_STATES column, float64_t value)CHMM
set_B(T_STATES line_, uint16_t column, float64_t value)CHMM
set_b(T_STATES line_, uint16_t column, float64_t value)CHMM
set_epsilon(float64_t eps)CHMM
set_features(CFeatures *f)CDistributionvirtual
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_iterations(int32_t num)CHMM
set_observation_nocache(CStringFeatures< uint16_t > *obs)CHMM
set_observations(CStringFeatures< uint16_t > *obs, CHMM *hmm=NULL)CHMM
set_p(T_STATES offset, float64_t value)CHMM
set_pseudo(float64_t pseudo)CHMM
set_pseudo_count(float64_t pseudo)CDistributionvirtual
set_psi(int32_t time, T_STATES state, T_STATES value, int32_t dimension)CHMM
set_q(T_STATES offset, float64_t value)CHMM
shallow_copy() const CSGObjectvirtual
state_probability(int32_t time, int32_t state, int32_t dimension)CHMM
states_per_observation_psiCHMMprotected
statusCHMMprotected
train(CFeatures *data=NULL)CHMMvirtual
transition_matrix_ACHMMprotected
transition_matrix_aCHMMprotected
transition_probability(int32_t time, int32_t state_i, int32_t state_j, int32_t dimension)CHMM
unset_generic()CSGObject
update_parameter_hash()CSGObjectprotectedvirtual
versionCSGObject
~CDistribution()CDistributionvirtual
~CHMM()CHMMvirtual
~CSGObject()CSGObjectvirtual

SHOGUN Machine Learning Toolbox - Documentation