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CIntronList Member List

This is the complete list of members for CIntronList, including all inherited members.

build_parameter_dictionary(CMap< TParameter *, CSGObject * > &dict)CSGObject
CIntronList()CIntronList
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() const CSGObjectvirtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_intron_support(int32_t *values, int32_t from_pos, int32_t to_pos)CIntronList
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CIntronListvirtual
init_list(int32_t *all_pos, int32_t len)CIntronList
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER)CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_all_posCIntronListprotected
m_hashCSGObject
m_intron_listCIntronListprotected
m_lengthCIntronListprotected
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
m_quality_listCIntronListprotected
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
parallelCSGObject
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
read_introns(int32_t *start_pos, int32_t *end_pos, int32_t *quality, int32_t len)CIntronList
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER)CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
shallow_copy() const CSGObjectvirtual
unset_generic()CSGObject
update_parameter_hash()CSGObjectprotectedvirtual
versionCSGObject
~CIntronList()CIntronListvirtual
~CSGObject()CSGObjectvirtual

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