CrossValidationMulticlassStorage.h

Go to the documentation of this file.
00001 /*
00002  * This program is free software; you can redistribute it and/or modify
00003  * it under the terms of the GNU General Public License as published by
00004  * the Free Software Foundation; either version 3 of the License, or
00005  * (at your option) any later version.
00006  *
00007  * Written (W) 2012 Heiko Strathmann, Sergey Lisitsyn
00008  *
00009  */
00010 
00011 #ifndef CROSSVALIDATIONMULTICLASSSTORAGE_H_
00012 #define CROSSVALIDATIONMULTICLASSSTORAGE_H_
00013 
00014 #include <shogun/evaluation/CrossValidationOutput.h>
00015 #include <shogun/evaluation/BinaryClassEvaluation.h>
00016 #include <shogun/labels/MulticlassLabels.h>
00017 #include <shogun/lib/SGMatrix.h>
00018 #include <shogun/lib/DynamicObjectArray.h>
00019 
00020 namespace shogun
00021 {
00022 
00023 class CMachine;
00024 class CLabels;
00025 class CEvaluation;
00026 
00031 class CCrossValidationMulticlassStorage: public CCrossValidationOutput
00032 {
00033 public:
00034 
00040     CCrossValidationMulticlassStorage(bool compute_ROC=true, bool compute_PRC=false, bool compute_conf_matrices=false);
00041 
00043     virtual ~CCrossValidationMulticlassStorage();
00044 
00052     SGMatrix<float64_t> get_fold_ROC(int32_t run, int32_t fold, int32_t c)
00053     {
00054         ASSERT(0<=run);
00055         ASSERT(run<m_num_runs);
00056         ASSERT(0<=fold);
00057         ASSERT(fold<m_num_folds);
00058         ASSERT(0<=c);
00059         ASSERT(c<m_num_classes);
00060         REQUIRE(m_compute_ROC, "ROC computation was not enabled\n");
00061         return m_fold_ROC_graphs[run*m_num_folds*m_num_classes+fold*m_num_classes+c];
00062     }
00063     
00071     SGMatrix<float64_t> get_fold_PRC(int32_t run, int32_t fold, int32_t c)
00072     {
00073         ASSERT(0<=run);
00074         ASSERT(run<m_num_runs);
00075         ASSERT(0<=fold);
00076         ASSERT(fold<m_num_folds);
00077         ASSERT(0<=c);
00078         ASSERT(c<m_num_classes);
00079         REQUIRE(m_compute_PRC, "PRC computation was not enabled\n");
00080         return m_fold_PRC_graphs[run*m_num_folds*m_num_classes+fold*m_num_classes+c];
00081     }
00082 
00087     void append_binary_evaluation(CBinaryClassEvaluation* evaluation)
00088     {
00089         m_binary_evaluations->push_back(evaluation);
00090     }
00091 
00096     CBinaryClassEvaluation* get_binary_evaluation(int32_t idx)
00097     {
00098         return (CBinaryClassEvaluation*)m_binary_evaluations->get_element_safe(idx);
00099     }
00100 
00108     float64_t get_fold_evaluation_result(int32_t run, int32_t fold, int32_t c, int32_t e)
00109     {
00110         ASSERT(0<=run);
00111         ASSERT(run<m_num_runs);
00112         ASSERT(0<=fold);
00113         ASSERT(fold<m_num_folds);
00114         ASSERT(0<=c);
00115         ASSERT(c<m_num_classes);
00116         ASSERT(0<=e);
00117         int32_t n_evals = m_binary_evaluations->get_num_elements();
00118         ASSERT(e<n_evals);
00119         return m_evaluations_results[run*m_num_folds*m_num_classes*n_evals+fold*m_num_classes*n_evals+c*n_evals+e];
00120     }
00121 
00126     float64_t get_fold_accuracy(int32_t run, int32_t fold)
00127     {
00128         ASSERT(0<=run);
00129         ASSERT(run<m_num_runs);
00130         ASSERT(0<=fold);
00131         ASSERT(fold<m_num_folds);
00132         return m_accuracies[run*m_num_folds+fold];
00133     }
00134 
00139     SGMatrix<int32_t> get_fold_conf_matrix(int32_t run, int32_t fold)
00140     {
00141         ASSERT(0<=run);
00142         ASSERT(run<m_num_runs);
00143         ASSERT(0<=fold);
00144         ASSERT(fold<m_num_folds);
00145         REQUIRE(m_compute_conf_matrices, "Confusion matrices computation was not enabled\n");
00146         return m_conf_matrices[run*m_num_folds+fold];
00147     }
00148 
00150     virtual void post_init();
00151 
00153     virtual void post_update_results();
00154 
00158     virtual void init_expose_labels(CLabels* labels);
00159 
00165     virtual void update_test_result(CLabels* results,
00166             const char* prefix="");
00167 
00173     virtual void update_test_true_result(CLabels* results,
00174             const char* prefix="");
00175 
00177     virtual const char* get_name() const { return "CrossValidationMulticlassStorage"; }
00178 
00179 protected:
00180 
00182     bool m_initialized;
00183 
00185     CDynamicObjectArray* m_binary_evaluations;
00186 
00188     SGVector<float64_t> m_evaluations_results;
00189 
00191     SGVector<float64_t> m_accuracies;
00192 
00194     bool m_compute_ROC;
00195 
00197     SGMatrix<float64_t>* m_fold_ROC_graphs; 
00198 
00200     bool m_compute_PRC;
00201 
00203     SGMatrix<float64_t>* m_fold_PRC_graphs; 
00204 
00206     bool m_compute_conf_matrices;
00207 
00209     SGMatrix<int32_t>* m_conf_matrices;
00210 
00212     CMulticlassLabels* m_pred_labels;
00213 
00215     CMulticlassLabels* m_true_labels;
00216 
00218     int32_t m_num_classes;
00219 
00220 };
00221 
00222 }
00223 
00224 #endif /* CROSSVALIDATIONMULTICLASSSTORAGE_H_ */
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines

SHOGUN Machine Learning Toolbox - Documentation