SVRLight.cpp

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00001 /*
00002  * This program is free software; you can redistribute it and/or modify
00003  * it under the terms of the GNU General Public License as published by
00004  * the Free Software Foundation; either version 3 of the License, or
00005  * (at your option) any later version.
00006  *
00007  * Written (W) 1999-2009 Soeren Sonnenburg
00008  * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
00009  */
00010 
00011 #include <shogun/lib/config.h>
00012 
00013 #ifdef USE_SVMLIGHT
00014 
00015 #include <shogun/io/SGIO.h>
00016 #include <shogun/mathematics/lapack.h>
00017 #include <shogun/lib/Signal.h>
00018 #include <shogun/mathematics/Math.h>
00019 #include <shogun/regression/svr/SVRLight.h>
00020 #include <shogun/machine/KernelMachine.h>
00021 #include <shogun/kernel/CombinedKernel.h>
00022 #include <shogun/labels/RegressionLabels.h>
00023 
00024 #include <unistd.h>
00025 
00026 #ifdef USE_CPLEX
00027 extern "C" {
00028 #include <ilcplex/cplex.h>
00029 }
00030 #endif
00031 
00032 #include <shogun/base/Parallel.h>
00033 
00034 #ifdef HAVE_PTHREAD
00035 #include <pthread.h>
00036 #endif
00037 
00038 using namespace shogun;
00039 
00040 #ifndef DOXYGEN_SHOULD_SKIP_THIS
00041 struct S_THREAD_PARAM
00042 {
00043     float64_t* lin;
00044     int32_t start, end;
00045     int32_t* active2dnum;
00046     int32_t* docs;
00047     CKernel* kernel;
00048     int32_t num_vectors;
00049 };
00050 #endif // DOXYGEN_SHOULD_SKIP_THIS
00051 
00052 CSVRLight::CSVRLight(float64_t C, float64_t eps, CKernel* k, CLabels* lab)
00053 : CSVMLight(C, k, lab)
00054 {
00055     set_tube_epsilon(eps);
00056 }
00057 
00058 CSVRLight::CSVRLight()
00059 : CSVMLight()
00060 {
00061 }
00062 
00064 CSVRLight::~CSVRLight()
00065 {
00066 }
00067 
00068 EMachineType CSVRLight::get_classifier_type()
00069 {
00070     return CT_SVRLIGHT;
00071 }
00072 
00073 bool CSVRLight::train_machine(CFeatures* data)
00074 {
00075     //certain setup params
00076     verbosity=1;
00077     init_margin=0.15;
00078     init_iter=500;
00079     precision_violations=0;
00080     opt_precision=DEF_PRECISION;
00081 
00082     strcpy (learn_parm->predfile, "");
00083     learn_parm->biased_hyperplane=1;
00084     learn_parm->sharedslack=0;
00085     learn_parm->remove_inconsistent=0;
00086     learn_parm->skip_final_opt_check=1;
00087     learn_parm->svm_maxqpsize=get_qpsize();
00088     learn_parm->svm_newvarsinqp=learn_parm->svm_maxqpsize-1;
00089     learn_parm->maxiter=100000;
00090     learn_parm->svm_iter_to_shrink=100;
00091     learn_parm->svm_c=get_C1();
00092     learn_parm->transduction_posratio=0.33;
00093     learn_parm->svm_costratio=get_C2()/get_C1();
00094     learn_parm->svm_costratio_unlab=1.0;
00095     learn_parm->svm_unlabbound=1E-5;
00096     learn_parm->epsilon_crit=epsilon; // GU: better decrease it ... ??
00097     learn_parm->epsilon_a=1E-15;
00098     learn_parm->compute_loo=0;
00099     learn_parm->rho=1.0;
00100     learn_parm->xa_depth=0;
00101 
00102     if (!kernel)
00103     {
00104         SG_ERROR( "SVR_light can not proceed without kernel!\n");
00105         return false ;
00106     }
00107 
00108     if (!m_labels)
00109     {
00110         SG_ERROR( "SVR_light can not proceed without labels!\n");
00111         return false;
00112     }
00113 
00114     if (data)
00115     {
00116         if (m_labels->get_num_labels() != data->get_num_vectors())
00117             SG_ERROR("Number of training vectors does not match number of labels\n");
00118         kernel->init(data, data);
00119     }
00120 
00121     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00122         kernel->clear_normal();
00123 
00124     // output some info
00125     SG_DEBUG( "qpsize = %i\n", learn_parm->svm_maxqpsize) ;
00126     SG_DEBUG( "epsilon = %1.1e\n", learn_parm->epsilon_crit) ;
00127     SG_DEBUG( "kernel->has_property(KP_LINADD) = %i\n", kernel->has_property(KP_LINADD)) ;
00128     SG_DEBUG( "kernel->has_property(KP_KERNCOMBINATION) = %i\n", kernel->has_property(KP_KERNCOMBINATION)) ;
00129     SG_DEBUG( "get_linadd_enabled() = %i\n", get_linadd_enabled()) ;
00130     SG_DEBUG( "kernel->get_num_subkernels() = %i\n", kernel->get_num_subkernels()) ;
00131 
00132     use_kernel_cache = !((kernel->get_kernel_type() == K_CUSTOM) ||
00133                          (get_linadd_enabled() && kernel->has_property(KP_LINADD)));
00134 
00135     SG_DEBUG( "use_kernel_cache = %i\n", use_kernel_cache) ;
00136 
00137     // train the svm
00138     svr_learn();
00139 
00140     // brain damaged svm light work around
00141     create_new_model(model->sv_num-1);
00142     set_bias(-model->b);
00143     for (int32_t i=0; i<model->sv_num-1; i++)
00144     {
00145         set_alpha(i, model->alpha[i+1]);
00146         set_support_vector(i, model->supvec[i+1]);
00147     }
00148 
00149     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00150         kernel->clear_normal() ;
00151 
00152     return true ;
00153 }
00154 
00155 void CSVRLight::svr_learn()
00156 {
00157     int32_t *inconsistent, i, j;
00158     int32_t upsupvecnum;
00159     float64_t maxdiff, *lin, *c, *a;
00160     int32_t iterations;
00161     float64_t *xi_fullset; /* buffer for storing xi on full sample in loo */
00162     float64_t *a_fullset;  /* buffer for storing alpha on full sample in loo */
00163     TIMING timing_profile;
00164     SHRINK_STATE shrink_state;
00165     int32_t* label;
00166     int32_t* docs;
00167 
00168     ASSERT(m_labels);
00169     int32_t totdoc=m_labels->get_num_labels();
00170     num_vectors=totdoc;
00171 
00172     // set up regression problem in standard form
00173     docs=SG_MALLOC(int32_t, 2*totdoc);
00174     label=SG_MALLOC(int32_t, 2*totdoc);
00175     c = SG_MALLOC(float64_t, 2*totdoc);
00176 
00177   for(i=0;i<totdoc;i++) {
00178       docs[i]=i;
00179       j=2*totdoc-1-i;
00180       label[i]=+1;
00181       c[i]=((CRegressionLabels*) m_labels)->get_label(i);
00182       docs[j]=j;
00183       label[j]=-1;
00184       c[j]=((CRegressionLabels*) m_labels)->get_label(i);
00185   }
00186   totdoc*=2;
00187 
00188   //prepare kernel cache for regression (i.e. cachelines are twice of current size)
00189   kernel->resize_kernel_cache( kernel->get_cache_size(), true);
00190 
00191   if (kernel->get_kernel_type() == K_COMBINED)
00192   {
00193       CCombinedKernel* k      = (CCombinedKernel*) kernel;
00194       CKernel* kn = k->get_first_kernel();
00195 
00196       while (kn)
00197       {
00198           kn->resize_kernel_cache( kernel->get_cache_size(), true);
00199           SG_UNREF(kn);
00200           kn = k->get_next_kernel();
00201       }
00202   }
00203 
00204   timing_profile.time_kernel=0;
00205   timing_profile.time_opti=0;
00206   timing_profile.time_shrink=0;
00207   timing_profile.time_update=0;
00208   timing_profile.time_model=0;
00209   timing_profile.time_check=0;
00210   timing_profile.time_select=0;
00211 
00212     SG_FREE(W);
00213     W=NULL;
00214 
00215     if (kernel->has_property(KP_KERNCOMBINATION) && callback)
00216     {
00217         W = SG_MALLOC(float64_t, totdoc*kernel->get_num_subkernels());
00218         for (i=0; i<totdoc*kernel->get_num_subkernels(); i++)
00219             W[i]=0;
00220     }
00221 
00222     /* make sure -n value is reasonable */
00223     if((learn_parm->svm_newvarsinqp < 2)
00224             || (learn_parm->svm_newvarsinqp > learn_parm->svm_maxqpsize)) {
00225         learn_parm->svm_newvarsinqp=learn_parm->svm_maxqpsize;
00226     }
00227 
00228     init_shrink_state(&shrink_state,totdoc,(int32_t)MAXSHRINK);
00229 
00230     inconsistent = SG_MALLOC(int32_t, totdoc);
00231     a = SG_MALLOC(float64_t, totdoc);
00232     a_fullset = SG_MALLOC(float64_t, totdoc);
00233     xi_fullset = SG_MALLOC(float64_t, totdoc);
00234     lin = SG_MALLOC(float64_t, totdoc);
00235     learn_parm->svm_cost = SG_MALLOC(float64_t, totdoc);
00236     if (m_linear_term.vlen>0)
00237         learn_parm->eps=get_linear_term_array();
00238     else
00239     {
00240         learn_parm->eps=SG_MALLOC(float64_t, totdoc);      /* equivalent regression epsilon for classification */
00241         SGVector<float64_t>::fill_vector(learn_parm->eps, totdoc, tube_epsilon);
00242     }
00243 
00244     SG_FREE(model->supvec);
00245     SG_FREE(model->alpha);
00246     SG_FREE(model->index);
00247     model->supvec = SG_MALLOC(int32_t, totdoc+2);
00248     model->alpha = SG_MALLOC(float64_t, totdoc+2);
00249     model->index = SG_MALLOC(int32_t, totdoc+2);
00250 
00251     model->at_upper_bound=0;
00252     model->b=0;
00253     model->supvec[0]=0;  /* element 0 reserved and empty for now */
00254     model->alpha[0]=0;
00255     model->totdoc=totdoc;
00256 
00257     model->kernel=kernel;
00258 
00259     model->sv_num=1;
00260     model->loo_error=-1;
00261     model->loo_recall=-1;
00262     model->loo_precision=-1;
00263     model->xa_error=-1;
00264     model->xa_recall=-1;
00265     model->xa_precision=-1;
00266 
00267   for(i=0;i<totdoc;i++) {    /* various inits */
00268     inconsistent[i]=0;
00269     a[i]=0;
00270     lin[i]=0;
00271 
00272         if(label[i] > 0) {
00273             learn_parm->svm_cost[i]=learn_parm->svm_c*learn_parm->svm_costratio*
00274                 fabs((float64_t)label[i]);
00275         }
00276         else if(label[i] < 0) {
00277             learn_parm->svm_cost[i]=learn_parm->svm_c*fabs((float64_t)label[i]);
00278         }
00279         else
00280             ASSERT(false);
00281     }
00282 
00283     if(verbosity==1) {
00284         SG_DEBUG( "Optimizing...\n");
00285     }
00286 
00287     /* train the svm */
00288         SG_DEBUG( "num_train: %d\n", totdoc);
00289   iterations=optimize_to_convergence(docs,label,totdoc,
00290                      &shrink_state,inconsistent,a,lin,
00291                      c,&timing_profile,
00292                      &maxdiff,(int32_t)-1,
00293                      (int32_t)1);
00294 
00295 
00296     if(verbosity>=1) {
00297         SG_DONE();
00298         SG_INFO("(%ld iterations)\n",iterations);
00299         SG_INFO( "Optimization finished (maxdiff=%.8f).\n",maxdiff);
00300         SG_INFO( "obj = %.16f, rho = %.16f\n",get_objective(),model->b);
00301 
00302         upsupvecnum=0;
00303 
00304         SG_DEBUG( "num sv: %d\n", model->sv_num);
00305         for(i=1;i<model->sv_num;i++)
00306         {
00307             if(fabs(model->alpha[i]) >=
00308                     (learn_parm->svm_cost[model->supvec[i]]-
00309                      learn_parm->epsilon_a))
00310                 upsupvecnum++;
00311         }
00312         SG_INFO( "Number of SV: %ld (including %ld at upper bound)\n",
00313                 model->sv_num-1,upsupvecnum);
00314     }
00315 
00316   /* this makes sure the model we return does not contain pointers to the
00317      temporary documents */
00318   for(i=1;i<model->sv_num;i++) {
00319     j=model->supvec[i];
00320     if(j >= (totdoc/2)) {
00321       j=totdoc-j-1;
00322     }
00323     model->supvec[i]=j;
00324   }
00325 
00326   shrink_state_cleanup(&shrink_state);
00327     SG_FREE(label);
00328     SG_FREE(inconsistent);
00329     SG_FREE(c);
00330     SG_FREE(a);
00331     SG_FREE(a_fullset);
00332     SG_FREE(xi_fullset);
00333     SG_FREE(lin);
00334     SG_FREE(learn_parm->svm_cost);
00335     SG_FREE(docs);
00336 }
00337 
00338 float64_t CSVRLight::compute_objective_function(
00339     float64_t *a, float64_t *lin, float64_t *c, float64_t* eps, int32_t *label,
00340     int32_t totdoc)
00341 {
00342   /* calculate value of objective function */
00343   float64_t criterion=0;
00344 
00345   for(int32_t i=0;i<totdoc;i++)
00346       criterion+=(eps[i]-(float64_t)label[i]*c[i])*a[i]+0.5*a[i]*label[i]*lin[i];
00347 
00348   /* float64_t check=0;
00349   for(int32_t i=0;i<totdoc;i++)
00350   {
00351       check+=a[i]*eps-a[i]*label[i]*c[i];
00352       for(int32_t j=0;j<totdoc;j++)
00353           check+= 0.5*a[i]*label[i]*a[j]*label[j]*compute_kernel(i,j);
00354 
00355   }
00356 
00357   SG_INFO("REGRESSION OBJECTIVE %f vs. CHECK %f (diff %f)\n", criterion, check, criterion-check); */
00358 
00359   return(criterion);
00360 }
00361 
00362 void* CSVRLight::update_linear_component_linadd_helper(void *params_)
00363 {
00364     S_THREAD_PARAM * params = (S_THREAD_PARAM*) params_ ;
00365 
00366     int32_t jj=0, j=0 ;
00367 
00368     for(jj=params->start;(jj<params->end) && (j=params->active2dnum[jj])>=0;jj++)
00369         params->lin[j]+=params->kernel->compute_optimized(CSVRLight::regression_fix_index2(params->docs[j], params->num_vectors));
00370 
00371     return NULL ;
00372 }
00373 
00374 int32_t CSVRLight::regression_fix_index(int32_t i)
00375 {
00376     if (i>=num_vectors)
00377         i=2*num_vectors-1-i;
00378 
00379     return i;
00380 }
00381 
00382 int32_t CSVRLight::regression_fix_index2(
00383         int32_t i, int32_t num_vectors)
00384 {
00385     if (i>=num_vectors)
00386         i=2*num_vectors-1-i;
00387 
00388     return i;
00389 }
00390 
00391 float64_t CSVRLight::compute_kernel(int32_t i, int32_t j)
00392 {
00393     i=regression_fix_index(i);
00394     j=regression_fix_index(j);
00395     return kernel->kernel(i, j);
00396 }
00397 
00398 void CSVRLight::update_linear_component(
00399     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00400     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00401     float64_t *aicache, float64_t* c)
00402      /* keep track of the linear component */
00403      /* lin of the gradient etc. by updating */
00404      /* based on the change of the variables */
00405      /* in the current working set */
00406 {
00407     register int32_t i=0,ii=0,j=0,jj=0;
00408 
00409     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00410     {
00411         if (callback)
00412         {
00413             update_linear_component_mkl_linadd(docs, label, active2dnum, a, a_old, working2dnum,
00414                                                totdoc,  lin, aicache, c) ;
00415         }
00416         else
00417         {
00418             kernel->clear_normal();
00419 
00420             int32_t num_working=0;
00421             for(ii=0;(i=working2dnum[ii])>=0;ii++) {
00422                 if(a[i] != a_old[i]) {
00423                     kernel->add_to_normal(regression_fix_index(docs[i]), (a[i]-a_old[i])*(float64_t)label[i]);
00424                     num_working++;
00425                 }
00426             }
00427 
00428             if (num_working>0)
00429             {
00430                 if (parallel->get_num_threads() < 2)
00431                 {
00432                     for(jj=0;(j=active2dnum[jj])>=0;jj++) {
00433                         lin[j]+=kernel->compute_optimized(regression_fix_index(docs[j]));
00434                     }
00435                 }
00436 #ifdef HAVE_PTHREAD
00437                 else
00438                 {
00439                     int32_t num_elem = 0 ;
00440                     for(jj=0;(j=active2dnum[jj])>=0;jj++) num_elem++ ;
00441 
00442                     pthread_t* threads = SG_MALLOC(pthread_t, parallel->get_num_threads()-1);
00443                     S_THREAD_PARAM* params = SG_MALLOC(S_THREAD_PARAM, parallel->get_num_threads()-1);
00444                     int32_t start = 0 ;
00445                     int32_t step = num_elem/parallel->get_num_threads() ;
00446                     int32_t end = step ;
00447 
00448                     for (int32_t t=0; t<parallel->get_num_threads()-1; t++)
00449                     {
00450                         params[t].kernel = kernel ;
00451                         params[t].lin = lin ;
00452                         params[t].docs = docs ;
00453                         params[t].active2dnum=active2dnum ;
00454                         params[t].start = start ;
00455                         params[t].end = end ;
00456                         params[t].num_vectors=num_vectors ;
00457 
00458                         start=end ;
00459                         end+=step ;
00460                         pthread_create(&threads[t], NULL, update_linear_component_linadd_helper, (void*)&params[t]) ;
00461                     }
00462 
00463                     for(jj=params[parallel->get_num_threads()-2].end;(j=active2dnum[jj])>=0;jj++) {
00464                         lin[j]+=kernel->compute_optimized(regression_fix_index(docs[j]));
00465                     }
00466                     void* ret;
00467                     for (int32_t t=0; t<parallel->get_num_threads()-1; t++)
00468                         pthread_join(threads[t], &ret) ;
00469 
00470                     SG_FREE(params);
00471                     SG_FREE(threads);
00472                 }
00473 #endif
00474             }
00475         }
00476     }
00477     else
00478     {
00479         if (callback)
00480         {
00481             update_linear_component_mkl(docs, label, active2dnum,
00482                     a, a_old, working2dnum, totdoc, lin, aicache, c) ;
00483         }
00484         else {
00485             for(jj=0;(i=working2dnum[jj])>=0;jj++) {
00486                 if(a[i] != a_old[i]) {
00487                     kernel->get_kernel_row(i,active2dnum,aicache);
00488                     for(ii=0;(j=active2dnum[ii])>=0;ii++)
00489                         lin[j]+=(a[i]-a_old[i])*aicache[j]*(float64_t)label[i];
00490                 }
00491             }
00492         }
00493     }
00494 }
00495 
00496 void CSVRLight::update_linear_component_mkl(
00497     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00498     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00499     float64_t *aicache, float64_t* c)
00500 {
00501     int32_t num         = totdoc;
00502     int32_t num_weights = -1;
00503     int32_t num_kernels = kernel->get_num_subkernels() ;
00504     const float64_t* old_beta  = kernel->get_subkernel_weights(num_weights);
00505 
00506     ASSERT(num_weights==num_kernels);
00507 
00508     if ((kernel->get_kernel_type()==K_COMBINED) &&
00509              (!((CCombinedKernel*)kernel)->get_append_subkernel_weights()))// for combined kernel
00510     {
00511         CCombinedKernel* k      = (CCombinedKernel*) kernel;
00512         CKernel* kn = k->get_first_kernel() ;
00513         int32_t n = 0, i, j ;
00514 
00515         while (kn!=NULL)
00516         {
00517             for(i=0;i<num;i++)
00518             {
00519                 if(a[i] != a_old[i])
00520                 {
00521                     kn->get_kernel_row(i,NULL,aicache, true);
00522                     for(j=0;j<num;j++)
00523                         W[j*num_kernels+n]+=(a[i]-a_old[i])*aicache[regression_fix_index(j)]*(float64_t)label[i];
00524                 }
00525             }
00526             SG_UNREF(kn);
00527             kn = k->get_next_kernel();
00528             n++ ;
00529         }
00530     }
00531     else // hope the kernel is fast ...
00532     {
00533         float64_t* w_backup = SG_MALLOC(float64_t, num_kernels);
00534         float64_t* w1 = SG_MALLOC(float64_t, num_kernels);
00535 
00536         // backup and set to zero
00537         for (int32_t i=0; i<num_kernels; i++)
00538         {
00539             w_backup[i] = old_beta[i] ;
00540             w1[i]=0.0 ;
00541         }
00542         for (int32_t n=0; n<num_kernels; n++)
00543         {
00544             w1[n]=1.0 ;
00545             kernel->set_subkernel_weights(SGVector<float64_t>(w1, num_weights)) ;
00546 
00547             for(int32_t i=0;i<num;i++)
00548             {
00549                 if(a[i] != a_old[i])
00550                 {
00551                     for(int32_t j=0;j<num;j++)
00552                         W[j*num_kernels+n]+=(a[i]-a_old[i])*compute_kernel(i,j)*(float64_t)label[i];
00553                 }
00554             }
00555             w1[n]=0.0 ;
00556         }
00557 
00558         // restore old weights
00559         kernel->set_subkernel_weights(SGVector<float64_t>(w_backup,num_weights));
00560 
00561         SG_FREE(w_backup);
00562         SG_FREE(w1);
00563     }
00564 
00565     call_mkl_callback(a, label, lin, c, totdoc);
00566 }
00567 
00568 
00569 void CSVRLight::update_linear_component_mkl_linadd(
00570     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00571     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00572     float64_t *aicache, float64_t* c)
00573 {
00574     // kernel with LP_LINADD property is assumed to have
00575     // compute_by_subkernel functions
00576     int32_t num_weights = -1;
00577     int32_t num_kernels = kernel->get_num_subkernels() ;
00578     const float64_t* old_beta   = kernel->get_subkernel_weights(num_weights);
00579 
00580     ASSERT(num_weights==num_kernels);
00581 
00582     float64_t* w_backup=SG_MALLOC(float64_t, num_kernels);
00583     float64_t* w1=SG_MALLOC(float64_t, num_kernels);
00584 
00585     // backup and set to one
00586     for (int32_t i=0; i<num_kernels; i++)
00587     {
00588         w_backup[i] = old_beta[i] ;
00589         w1[i]=1.0 ;
00590     }
00591     // set the kernel weights
00592     kernel->set_subkernel_weights(SGVector<float64_t>(w1, num_weights));
00593 
00594     // create normal update (with changed alphas only)
00595     kernel->clear_normal();
00596     for(int32_t ii=0, i=0;(i=working2dnum[ii])>=0;ii++) {
00597         if(a[i] != a_old[i]) {
00598             kernel->add_to_normal(regression_fix_index(docs[i]), (a[i]-a_old[i])*(float64_t)label[i]);
00599         }
00600     }
00601 
00602     // determine contributions of different kernels
00603     for (int32_t i=0; i<num_vectors; i++)
00604         kernel->compute_by_subkernel(i,&W[i*num_kernels]) ;
00605 
00606     // restore old weights
00607     kernel->set_subkernel_weights(SGVector<float64_t>(w_backup,num_weights));
00608 
00609     call_mkl_callback(a, label, lin, c, totdoc);
00610 }
00611 
00612 void CSVRLight::call_mkl_callback(float64_t* a, int32_t* label, float64_t* lin, float64_t* c, int32_t totdoc)
00613 {
00614     int32_t num = totdoc;
00615     int32_t num_kernels = kernel->get_num_subkernels() ;
00616     float64_t sumalpha = 0;
00617     float64_t* sumw=SG_MALLOC(float64_t, num_kernels);
00618 
00619     for (int32_t i=0; i<num; i++)
00620         sumalpha-=a[i]*(learn_parm->eps[i]-label[i]*c[i]);
00621 
00622 #ifdef HAVE_LAPACK
00623     int nk = (int) num_kernels; // calling external lib
00624     double* alphay  = SG_MALLOC(double, num);
00625     for (int32_t i=0; i<num; i++)
00626         alphay[i]=a[i]*label[i];
00627 
00628     for (int32_t i=0; i<num_kernels; i++)
00629         sumw[i]=0;
00630 
00631     cblas_dgemv(CblasColMajor, CblasNoTrans, nk, (int) num, 0.5, (double*) W,
00632         nk, (double*) alphay, 1, 1.0, (double*) sumw, 1);
00633 
00634     SG_FREE(alphay);
00635 #else
00636     for (int32_t d=0; d<num_kernels; d++)
00637     {
00638         sumw[d]=0;
00639         for(int32_t i=0; i<num; i++)
00640             sumw[d] += 0.5*a[i]*label[i]*W[i*num_kernels+d];
00641     }
00642 #endif
00643 
00644     if (callback)
00645         mkl_converged=callback(mkl, sumw, sumalpha);
00646 
00647     const float64_t* new_beta   = kernel->get_subkernel_weights(num_kernels);
00648 
00649     // update lin
00650 #ifdef HAVE_LAPACK
00651     cblas_dgemv(CblasColMajor, CblasTrans, nk, (int) num, 1.0, (double*) W,
00652         nk, (double*) new_beta, 1, 0.0, (double*) lin, 1);
00653 #else
00654     for(int32_t i=0; i<num; i++)
00655         lin[i]=0 ;
00656     for (int32_t d=0; d<num_kernels; d++)
00657         if (new_beta[d]!=0)
00658             for(int32_t i=0; i<num; i++)
00659                 lin[i] += new_beta[d]*W[i*num_kernels+d] ;
00660 #endif
00661 
00662 
00663     SG_FREE(sumw);
00664 }
00665 
00666 
00667 void CSVRLight::reactivate_inactive_examples(
00668     int32_t* label, float64_t *a, SHRINK_STATE *shrink_state, float64_t *lin,
00669     float64_t *c, int32_t totdoc, int32_t iteration, int32_t *inconsistent,
00670     int32_t* docs, float64_t *aicache, float64_t *maxdiff)
00671      /* Make all variables active again which had been removed by
00672         shrinking. */
00673      /* Computes lin for those variables from scratch. */
00674 {
00675   register int32_t i=0,j,ii=0,jj,t,*changed2dnum,*inactive2dnum;
00676   int32_t *changed,*inactive;
00677   register float64_t *a_old,dist;
00678   float64_t ex_c,target;
00679 
00680   if (kernel->has_property(KP_LINADD) && get_linadd_enabled()) { /* special linear case */
00681       a_old=shrink_state->last_a;
00682 
00683       kernel->clear_normal();
00684       int32_t num_modified=0;
00685       for(i=0;i<totdoc;i++) {
00686           if(a[i] != a_old[i]) {
00687               kernel->add_to_normal(regression_fix_index(docs[i]), ((a[i]-a_old[i])*(float64_t)label[i]));
00688               a_old[i]=a[i];
00689               num_modified++;
00690           }
00691       }
00692 
00693       if (num_modified>0)
00694       {
00695           for(i=0;i<totdoc;i++) {
00696               if(!shrink_state->active[i]) {
00697                   lin[i]=shrink_state->last_lin[i]+kernel->compute_optimized(regression_fix_index(docs[i]));
00698               }
00699               shrink_state->last_lin[i]=lin[i];
00700           }
00701       }
00702   }
00703   else
00704   {
00705       changed=SG_MALLOC(int32_t, totdoc);
00706       changed2dnum=SG_MALLOC(int32_t, totdoc+11);
00707       inactive=SG_MALLOC(int32_t, totdoc);
00708       inactive2dnum=SG_MALLOC(int32_t, totdoc+11);
00709       for(t=shrink_state->deactnum-1;(t>=0) && shrink_state->a_history[t];t--) {
00710           if(verbosity>=2) {
00711               SG_INFO( "%ld..",t);
00712           }
00713           a_old=shrink_state->a_history[t];
00714           for(i=0;i<totdoc;i++) {
00715               inactive[i]=((!shrink_state->active[i])
00716                       && (shrink_state->inactive_since[i] == t));
00717               changed[i]= (a[i] != a_old[i]);
00718           }
00719           compute_index(inactive,totdoc,inactive2dnum);
00720           compute_index(changed,totdoc,changed2dnum);
00721 
00722           for(ii=0;(i=changed2dnum[ii])>=0;ii++) {
00723               CKernelMachine::kernel->get_kernel_row(i,inactive2dnum,aicache);
00724               for(jj=0;(j=inactive2dnum[jj])>=0;jj++)
00725                   lin[j]+=(a[i]-a_old[i])*aicache[j]*(float64_t)label[i];
00726           }
00727       }
00728       SG_FREE(changed);
00729       SG_FREE(changed2dnum);
00730       SG_FREE(inactive);
00731       SG_FREE(inactive2dnum);
00732   }
00733 
00734   (*maxdiff)=0;
00735   for(i=0;i<totdoc;i++) {
00736     shrink_state->inactive_since[i]=shrink_state->deactnum-1;
00737     if(!inconsistent[i]) {
00738       dist=(lin[i]-model->b)*(float64_t)label[i];
00739       target=-(learn_parm->eps[i]-(float64_t)label[i]*c[i]);
00740       ex_c=learn_parm->svm_cost[i]-learn_parm->epsilon_a;
00741       if((a[i]>learn_parm->epsilon_a) && (dist > target)) {
00742     if((dist-target)>(*maxdiff))  /* largest violation */
00743       (*maxdiff)=dist-target;
00744       }
00745       else if((a[i]<ex_c) && (dist < target)) {
00746     if((target-dist)>(*maxdiff))  /* largest violation */
00747       (*maxdiff)=target-dist;
00748       }
00749       if((a[i]>(0+learn_parm->epsilon_a))
00750      && (a[i]<ex_c)) {
00751     shrink_state->active[i]=1;                         /* not at bound */
00752       }
00753       else if((a[i]<=(0+learn_parm->epsilon_a)) && (dist < (target+learn_parm->epsilon_shrink))) {
00754     shrink_state->active[i]=1;
00755       }
00756       else if((a[i]>=ex_c)
00757           && (dist > (target-learn_parm->epsilon_shrink))) {
00758     shrink_state->active[i]=1;
00759       }
00760       else if(learn_parm->sharedslack) { /* make all active when sharedslack */
00761     shrink_state->active[i]=1;
00762       }
00763     }
00764   }
00765   if (use_kernel_cache) { /* update history for non-linear */
00766       for(i=0;i<totdoc;i++) {
00767           (shrink_state->a_history[shrink_state->deactnum-1])[i]=a[i];
00768       }
00769       for(t=shrink_state->deactnum-2;(t>=0) && shrink_state->a_history[t];t--) {
00770           SG_FREE(shrink_state->a_history[t]);
00771           shrink_state->a_history[t]=0;
00772       }
00773   }
00774 }
00775 #endif //USE_SVMLIGHT
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