, including all inherited members.
| build_parameter_dictionary(CMap< TParameter *, CSGObject * > &dict) | CSGObject | |
| CIntronList() | CIntronList | |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| deep_copy() const | CSGObject | [virtual] |
| get_global_io() | CSGObject | |
| get_global_parallel() | CSGObject | |
| get_global_version() | CSGObject | |
| get_intron_support(int32_t *values, int32_t from_pos, int32_t to_pos) | CIntronList | |
| get_modelsel_names() | CSGObject | |
| get_modsel_param_descr(const char *param_name) | CSGObject | |
| get_modsel_param_index(const char *param_name) | CSGObject | |
| get_name() const | CIntronList | [virtual] |
| init_list(int32_t *all_pos, int32_t len) | CIntronList | |
| io | CSGObject | |
| is_generic(EPrimitiveType *generic) const | CSGObject | [virtual] |
| load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="") | CSGObject | |
| load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="") | CSGObject | |
| load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER) | CSGObject | [virtual] |
| load_serializable_post() | CSGObject | [protected, virtual] |
| load_serializable_pre() | CSGObject | [protected, virtual] |
| m_all_pos | CIntronList | [protected] |
| m_hash | CSGObject | |
| m_intron_list | CIntronList | [protected] |
| m_length | CIntronList | [protected] |
| m_model_selection_parameters | CSGObject | |
| m_parameter_map | CSGObject | |
| m_parameters | CSGObject | |
| m_quality_list | CIntronList | [protected] |
| map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos) | CSGObject | |
| migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target) | CSGObject | [protected, virtual] |
| one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL) | CSGObject | [protected, virtual] |
| parallel | CSGObject | |
| print_modsel_params() | CSGObject | |
| print_serializable(const char *prefix="") | CSGObject | [virtual] |
| read_introns(int32_t *start_pos, int32_t *end_pos, int32_t *quality, int32_t len) | CIntronList | |
| save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER) | CSGObject | [virtual] |
| save_serializable_post() | CSGObject | [protected, virtual] |
| save_serializable_pre() | CSGObject | [protected, virtual] |
| set_generic() | CSGObject | |
| set_global_io(SGIO *io) | CSGObject | |
| set_global_parallel(Parallel *parallel) | CSGObject | |
| set_global_version(Version *version) | CSGObject | |
| shallow_copy() const | CSGObject | [virtual] |
| unset_generic() | CSGObject | |
| update_parameter_hash() | CSGObject | [protected, virtual] |
| version | CSGObject | |
| ~CIntronList() | CIntronList | [virtual] |
| ~CSGObject() | CSGObject | [virtual] |
