PolyMatchWordStringKernel.cpp

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/*
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * Written (W) 1999-2009 Soeren Sonnenburg
 * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
 */

#include <shogun/lib/common.h>
#include <shogun/io/SGIO.h>
#include <shogun/kernel/string/PolyMatchWordStringKernel.h>
#include <shogun/kernel/normalizer/SqrtDiagKernelNormalizer.h>
#include <shogun/features/Features.h>
#include <shogun/features/StringFeatures.h>

using namespace shogun;

CPolyMatchWordStringKernel::CPolyMatchWordStringKernel()
: CStringKernel<uint16_t>()
{
    init();
}

CPolyMatchWordStringKernel::CPolyMatchWordStringKernel(int32_t size, int32_t d, bool i)
: CStringKernel<uint16_t>(size)
{
    init();

    degree=d;
    inhomogene=i;
}

CPolyMatchWordStringKernel::CPolyMatchWordStringKernel(
    CStringFeatures<uint16_t>* l, CStringFeatures<uint16_t>* r, int32_t d, bool i)
: CStringKernel<uint16_t>()
{
    init();

    degree=d;
    inhomogene=i;

    init(l, r);
}

CPolyMatchWordStringKernel::~CPolyMatchWordStringKernel()
{
    cleanup();
}

bool CPolyMatchWordStringKernel::init(CFeatures* l, CFeatures* r)
{
    CStringKernel<uint16_t>::init(l,r);
    return init_normalizer();
}

void CPolyMatchWordStringKernel::cleanup()
{
    CKernel::cleanup();
}

float64_t CPolyMatchWordStringKernel::compute(int32_t idx_a, int32_t idx_b)
{
    int32_t alen, blen;
    bool free_avec, free_bvec;

    uint16_t* avec=((CStringFeatures<uint16_t>*) lhs)->get_feature_vector(idx_a, alen, free_avec);
    uint16_t* bvec=((CStringFeatures<uint16_t>*) rhs)->get_feature_vector(idx_b, blen, free_bvec);

    ASSERT(alen==blen)

    int32_t sum=0;

    for (int32_t i=0; i<alen; i++)
        sum+= (avec[i]==bvec[i]) ? 1 : 0;

    if (inhomogene)
        sum+=1;

    float64_t result=sum;

    for (int32_t j=1; j<degree; j++)
        result*=sum;

    ((CStringFeatures<uint16_t>*) lhs)->free_feature_vector(avec, idx_a, free_avec);
    ((CStringFeatures<uint16_t>*) rhs)->free_feature_vector(bvec, idx_b, free_bvec);
    return result;
}

void CPolyMatchWordStringKernel::init()
{
    degree=0;
    inhomogene=false;
    set_normalizer(new CSqrtDiagKernelNormalizer());

    SG_ADD(&degree, "degree", "Degree of poly-kernel.", MS_AVAILABLE);
    SG_ADD(&inhomogene, "inhomogene", "True for inhomogene poly-kernel.",
        MS_NOT_AVAILABLE);
}