config.h

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#define MACHINE "x86_64"
#define CONFIGURE_OPTIONS "TODO"
#define COMPFLAGS_CPP "-std=c++11 -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated -g   -march=native -fopenmp -O3 -fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse"
#define LINKFLAGS "-lpthread;/usr/lib/atlas-base/liblapack_atlas.so.3;/usr/lib/atlas-base/libcblas.so.3;/usr/lib/atlas-base/libf77blas.so.3;/usr/lib/atlas-base/libatlas.so.3;/usr/lib/liblapack.so.3;/usr/lib/libglpk.so;/usr/lib/libarpack.so;/usr/lib/x86_64-linux-gnu/libnlopt.so;/home/buildslave/nightly_default/build/third_party/libs/json/libjson-c.a;/usr/lib/x86_64-linux-gnu/libxml2.so;/usr/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libbz2.so;/usr/lib/x86_64-linux-gnu/liblzma.so;/usr/lib/libsnappy.so;/usr/lib/x86_64-linux-gnu/liblzo2.so"

#define SFMT_MEXP 19937
#define DSFMT_MEXP 19937

#define HAVE_HDF5 1
/* #undef HAVE_CURL */
#define HAVE_JSON 1
#define HAVE_XML 1
#define HAVE_LARGEFILE 1
#define HAVE_DOXYGEN 1
#define HAVE_LAPACK 1
/* #undef HAVE_MVEC */
/* #undef HAVE_PROTOBUF */

#define HAVE_ARPACK 1
#define HAVE_EIGEN3 1
/* #undef HAVE_CATLAS */
#define HAVE_ATLAS 1
#define HAVE_NLOPT 1
/* #undef USE_LPSOLVE */
#define HAVE_PTHREAD 1
/* #undef USE_CPLEX */
/* #undef HAVE_COLPACK */
/* #undef HAVE_ARPREC */

#define HAVE_POWL 1
#define HAVE_LGAMMAL 1
#define HAVE_SQRTL 1
#define HAVE_LOG2 1
/* #undef USE_LOGCACHE */
/* #undef USE_LOGSUMARRAY */

#define USE_SPINLOCKS 1
#define USE_SHORTREAL_KERNELCACHE 1
#define USE_BIGSTATES 1

/* #undef USE_HMMDEBUG */
#define USE_HMMCACHE 1
/* #undef USE_HMMPARALLEL */
/* #undef USE_HMMPARALLELSTRUCTURES */

/* #undef USE_PATHDEBUG */

#define USE_SVMLIGHT 1
/* #undef USE_MOSEK */

#define USE_GLPK 1
#define USE_LZO 1
#define USE_GZIP 1
#define USE_BZIP2 1
#define USE_LZMA 1
#define USE_REFERENCE_COUNTING 1
#define USE_SNAPPY 1

#define HAVE_SSE2 1
#define HAVE_BUILTIN_VECTOR 1
/* #undef OCTAVE_APIVERSION */

/* #undef DARWIN */
/* #undef FREEBSD */
#define LINUX 1

/* #undef USE_SWIG_DIRECTORS */
/* #undef TRACE_MEMORY_ALLOCS */
/* #undef USE_JEMALLOC */

/* #undef NARRAY_LIB */

/* #undef HAVE_CXX0X */
#define HAVE_CXX11 1
#define HAVE_CXX11_ATOMIC 1

/* #undef HAVE_JBLAS */