ExamplesModularJava.mainpage

Go to the documentation of this file.

/*! \page java_modular_examples Examples for Java Modular Interface

This page lists ready to run shogun examples for the Java Modular interface.

\li \subpage java_modular_classifier_examples 
\li \subpage java_modular_clustering_examples 
\li \subpage java_modular_converter_examples 
\li \subpage java_modular_distance_examples 
\li \subpage java_modular_distribution_examples 
\li \subpage java_modular_evaluation_examples 
\li \subpage java_modular_features_examples 
\li \subpage java_modular_kernel_examples 
\li \subpage java_modular_mkl_examples 
\li \subpage java_modular_preprocessor_examples 
\li \subpage java_modular_regression_examples 
\li \subpage java_modular_serialization_examples 
\li \subpage java_modular_tests_examples 

To run the examples issue
\verbatim
javac -jar path/to/modshogun.jar name_of_example.java
java -jar path/to/modshogun.jar name_of_example
\endverbatim

\section java_modular_classifier_examples Classifier


\li <b>examples/documented/java_modular/classifier_averaged_perceptron_modular.java</b>
\verbinclude classifier_averaged_perceptron_modular.java

\li <b>examples/documented/java_modular/classifier_domainadaptationsvm_modular.java</b>
\verbinclude classifier_domainadaptationsvm_modular.java

\li <b>examples/documented/java_modular/classifier_gaussiannaivebayes_modular.java</b>
\verbinclude classifier_gaussiannaivebayes_modular.java

\li <b>examples/documented/java_modular/classifier_gmnpsvm_modular.java</b>
\verbinclude classifier_gmnpsvm_modular.java

\li <b>examples/documented/java_modular/classifier_gpbtsvm_modular.java</b>
\verbinclude classifier_gpbtsvm_modular.java

\li <b>examples/documented/java_modular/classifier_knn_modular.java</b>
\verbinclude classifier_knn_modular.java

\li <b>examples/documented/java_modular/classifier_larank_modular.java</b>
\verbinclude classifier_larank_modular.java

\li <b>examples/documented/java_modular/classifier_lda_modular.java</b>
\verbinclude classifier_lda_modular.java

\li <b>examples/documented/java_modular/classifier_liblinear_modular.java</b>
\verbinclude classifier_liblinear_modular.java

\li <b>examples/documented/java_modular/classifier_libsvm_minimal_modular.java</b>
\verbinclude classifier_libsvm_minimal_modular.java

\li <b>examples/documented/java_modular/classifier_libsvm_modular.java</b>
\verbinclude classifier_libsvm_modular.java

\li <b>examples/documented/java_modular/classifier_libsvmoneclass_modular.java</b>
\verbinclude classifier_libsvmoneclass_modular.java

\li <b>examples/documented/java_modular/classifier_mpdsvm_modular.java</b>
\verbinclude classifier_mpdsvm_modular.java

\li <b>examples/documented/java_modular/classifier_multiclasslibsvm_modular.java</b>
\verbinclude classifier_multiclasslibsvm_modular.java

\li <b>examples/documented/java_modular/classifier_perceptron_modular.java</b>
\verbinclude classifier_perceptron_modular.java

\li <b>examples/documented/java_modular/classifier_svmlight_linear_term_modular.java</b>
\verbinclude classifier_svmlight_linear_term_modular.java

\li <b>examples/documented/java_modular/classifier_svmlight_modular.java</b>
\verbinclude classifier_svmlight_modular.java

\section java_modular_clustering_examples Clustering


\li <b>examples/documented/java_modular/clustering_hierarchical_modular.java</b>
\verbinclude clustering_hierarchical_modular.java

\li <b>examples/documented/java_modular/clustering_kmeans_modular.java</b>
\verbinclude clustering_kmeans_modular.java

\section java_modular_converter_examples Converter


\li <b>examples/documented/java_modular/converter_isomap_modular.java</b>
\verbinclude converter_isomap_modular.java

\li <b>examples/documented/java_modular/converter_locallylinearembedding_modular.java</b>
\verbinclude converter_locallylinearembedding_modular.java

\li <b>examples/documented/java_modular/converter_multidimensionalscaling_modular.java</b>
\verbinclude converter_multidimensionalscaling_modular.java

\section java_modular_distance_examples Distance


\li <b>examples/documented/java_modular/distance_braycurtis_modular.java</b>
\verbinclude distance_braycurtis_modular.java

\li <b>examples/documented/java_modular/distance_canberra_modular.java</b>
\verbinclude distance_canberra_modular.java

\li <b>examples/documented/java_modular/distance_canberraword_modular.java</b>
\verbinclude distance_canberraword_modular.java

\li <b>examples/documented/java_modular/distance_chebyshew_modular.java</b>
\verbinclude distance_chebyshew_modular.java

\li <b>examples/documented/java_modular/distance_chisquare_modular.java</b>
\verbinclude distance_chisquare_modular.java

\li <b>examples/documented/java_modular/distance_cosine_modular.java</b>
\verbinclude distance_cosine_modular.java

\li <b>examples/documented/java_modular/distance_euclidean_modular.java</b>
\verbinclude distance_euclidean_modular.java

\li <b>examples/documented/java_modular/distance_geodesic_modular.java</b>
\verbinclude distance_geodesic_modular.java

\li <b>examples/documented/java_modular/distance_hammingword_modular.java</b>
\verbinclude distance_hammingword_modular.java

\li <b>examples/documented/java_modular/distance_jensen_modular.java</b>
\verbinclude distance_jensen_modular.java

\li <b>examples/documented/java_modular/distance_manhatten_modular.java</b>
\verbinclude distance_manhatten_modular.java

\li <b>examples/documented/java_modular/distance_manhattenword_modular.java</b>
\verbinclude distance_manhattenword_modular.java

\li <b>examples/documented/java_modular/distance_minkowski_modular.java</b>
\verbinclude distance_minkowski_modular.java

\li <b>examples/documented/java_modular/distance_normsquared_modular.java</b>
\verbinclude distance_normsquared_modular.java

\li <b>examples/documented/java_modular/distance_tanimoto_modular.java</b>
\verbinclude distance_tanimoto_modular.java

\section java_modular_distribution_examples Distribution


\li <b>examples/documented/java_modular/distribution_histogram_modular.java</b>
\verbinclude distribution_histogram_modular.java

\li <b>examples/documented/java_modular/distribution_hmm_modular.java</b>
\verbinclude distribution_hmm_modular.java

\li <b>examples/documented/java_modular/distribution_linearhmm_modular.java</b>
\verbinclude distribution_linearhmm_modular.java

\li <b>examples/documented/java_modular/distribution_ppwm_modular.java</b>
\verbinclude distribution_ppwm_modular.java

\section java_modular_evaluation_examples Evaluation


\li <b>examples/documented/java_modular/evaluation_contingencytableevaluation_modular.java</b>
\verbinclude evaluation_contingencytableevaluation_modular.java

\li <b>examples/documented/java_modular/evaluation_meansquarederror_modular.java</b>
\verbinclude evaluation_meansquarederror_modular.java

\li <b>examples/documented/java_modular/evaluation_multiclassaccuracy_modular.java</b>
\verbinclude evaluation_multiclassaccuracy_modular.java

\li <b>examples/documented/java_modular/evaluation_prcevaluation_modular.java</b>
\verbinclude evaluation_prcevaluation_modular.java

\li <b>examples/documented/java_modular/evaluation_rocevaluation_modular.java</b>
\verbinclude evaluation_rocevaluation_modular.java

\section java_modular_features_examples Features


\li <b>examples/documented/java_modular/features_dense_modular.java</b>
\verbinclude features_dense_modular.java

\li <b>examples/documented/java_modular/features_snp_modular.java</b>
\verbinclude features_snp_modular.java

\li <b>examples/documented/java_modular/features_string_char_compressed_modular.java</b>
\verbinclude features_string_char_compressed_modular.java

\li <b>examples/documented/java_modular/features_string_char_modular.java</b>
\verbinclude features_string_char_modular.java

\li <b>examples/documented/java_modular/features_string_file_char_modular.java</b>
\verbinclude features_string_file_char_modular.java

\li <b>examples/documented/java_modular/features_string_file_modular.java</b>
\verbinclude features_string_file_modular.java

\li <b>examples/documented/java_modular/features_string_hashed_wd_modular.java</b>
\verbinclude features_string_hashed_wd_modular.java

\li <b>examples/documented/java_modular/features_string_sliding_window_modular.java</b>
\verbinclude features_string_sliding_window_modular.java

\li <b>examples/documented/java_modular/features_string_ulong_modular.java</b>
\verbinclude features_string_ulong_modular.java

\li <b>examples/documented/java_modular/features_string_word_modular.java</b>
\verbinclude features_string_word_modular.java

\section java_modular_kernel_examples Kernel


\li <b>examples/documented/java_modular/kernel_anova_modular.java</b>
\verbinclude kernel_anova_modular.java

\li <b>examples/documented/java_modular/kernel_auc_modular.java</b>
\verbinclude kernel_auc_modular.java

\li <b>examples/documented/java_modular/kernel_cauchy_modular.java</b>
\verbinclude kernel_cauchy_modular.java

\li <b>examples/documented/java_modular/kernel_chi2_modular.java</b>
\verbinclude kernel_chi2_modular.java

\li <b>examples/documented/java_modular/kernel_circular_modular.java</b>
\verbinclude kernel_circular_modular.java

\li <b>examples/documented/java_modular/kernel_combined_custom_poly_modular.java</b>
\verbinclude kernel_combined_custom_poly_modular.java

\li <b>examples/documented/java_modular/kernel_combined_modular.java</b>
\verbinclude kernel_combined_modular.java

\li <b>examples/documented/java_modular/kernel_comm_ulong_string_modular.java</b>
\verbinclude kernel_comm_ulong_string_modular.java

\li <b>examples/documented/java_modular/kernel_comm_word_string_modular.java</b>
\verbinclude kernel_comm_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_const_modular.java</b>
\verbinclude kernel_const_modular.java

\li <b>examples/documented/java_modular/kernel_custom_modular.java</b>
\verbinclude kernel_custom_modular.java

\li <b>examples/documented/java_modular/kernel_diag_modular.java</b>
\verbinclude kernel_diag_modular.java

\li <b>examples/documented/java_modular/kernel_distance_modular.java</b>
\verbinclude kernel_distance_modular.java

\li <b>examples/documented/java_modular/kernel_distantsegments_modular.java</b>
\verbinclude kernel_distantsegments_modular.java

\li <b>examples/documented/java_modular/kernel_exponential_modular.java</b>
\verbinclude kernel_exponential_modular.java

\li <b>examples/documented/java_modular/kernel_fisher_modular.java</b>
\verbinclude kernel_fisher_modular.java

\li <b>examples/documented/java_modular/kernel_fixed_degree_string_modular.java</b>
\verbinclude kernel_fixed_degree_string_modular.java

\li <b>examples/documented/java_modular/kernel_gaussian_modular.java</b>
\verbinclude kernel_gaussian_modular.java

\li <b>examples/documented/java_modular/kernel_gaussian_shift_modular.java</b>
\verbinclude kernel_gaussian_shift_modular.java

\li <b>examples/documented/java_modular/kernel_histogram_word_string_modular.java</b>
\verbinclude kernel_histogram_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_inversemultiquadric_modular.java</b>
\verbinclude kernel_inversemultiquadric_modular.java

\li <b>examples/documented/java_modular/kernel_io_modular.java</b>
\verbinclude kernel_io_modular.java

\li <b>examples/documented/java_modular/kernel_linear_byte_modular.java</b>
\verbinclude kernel_linear_byte_modular.java

\li <b>examples/documented/java_modular/kernel_linear_modular.java</b>
\verbinclude kernel_linear_modular.java

\li <b>examples/documented/java_modular/kernel_linear_string_modular.java</b>
\verbinclude kernel_linear_string_modular.java

\li <b>examples/documented/java_modular/kernel_linear_word_modular.java</b>
\verbinclude kernel_linear_word_modular.java

\li <b>examples/documented/java_modular/kernel_local_alignment_string_modular.java</b>
\verbinclude kernel_local_alignment_string_modular.java

\li <b>examples/documented/java_modular/kernel_locality_improved_string_modular.java</b>
\verbinclude kernel_locality_improved_string_modular.java

\li <b>examples/documented/java_modular/kernel_log_modular.java</b>
\verbinclude kernel_log_modular.java

\li <b>examples/documented/java_modular/kernel_match_word_string_modular.java</b>
\verbinclude kernel_match_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_multiquadric_modular.java</b>
\verbinclude kernel_multiquadric_modular.java

\li <b>examples/documented/java_modular/kernel_oligo_string_modular.java</b>
\verbinclude kernel_oligo_string_modular.java

\li <b>examples/documented/java_modular/kernel_poly_match_string_modular.java</b>
\verbinclude kernel_poly_match_string_modular.java

\li <b>examples/documented/java_modular/kernel_poly_match_word_string_modular.java</b>
\verbinclude kernel_poly_match_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_poly_modular.java</b>
\verbinclude kernel_poly_modular.java

\li <b>examples/documented/java_modular/kernel_power_modular.java</b>
\verbinclude kernel_power_modular.java

\li <b>examples/documented/java_modular/kernel_rationalquadratic_modular.java</b>
\verbinclude kernel_rationalquadratic_modular.java

\li <b>examples/documented/java_modular/kernel_salzberg_word_string_modular.java</b>
\verbinclude kernel_salzberg_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_sigmoid_modular.java</b>
\verbinclude kernel_sigmoid_modular.java

\li <b>examples/documented/java_modular/kernel_simple_locality_improved_string_modular.java</b>
\verbinclude kernel_simple_locality_improved_string_modular.java

\li <b>examples/documented/java_modular/kernel_spherical_modular.java</b>
\verbinclude kernel_spherical_modular.java

\li <b>examples/documented/java_modular/kernel_spline_modular.java</b>
\verbinclude kernel_spline_modular.java

\li <b>examples/documented/java_modular/kernel_top_modular.java</b>
\verbinclude kernel_top_modular.java

\li <b>examples/documented/java_modular/kernel_tstudent_modular.java</b>
\verbinclude kernel_tstudent_modular.java

\li <b>examples/documented/java_modular/kernel_wave_modular.java</b>
\verbinclude kernel_wave_modular.java

\li <b>examples/documented/java_modular/kernel_wavelet_modular.java</b>
\verbinclude kernel_wavelet_modular.java

\li <b>examples/documented/java_modular/kernel_weighted_comm_word_string_modular.java</b>
\verbinclude kernel_weighted_comm_word_string_modular.java

\li <b>examples/documented/java_modular/kernel_weighted_degree_position_string_modular.java</b>
\verbinclude kernel_weighted_degree_position_string_modular.java

\li <b>examples/documented/java_modular/kernel_weighted_degree_string_modular.java</b>
\verbinclude kernel_weighted_degree_string_modular.java

\section java_modular_mkl_examples Mkl


\li <b>examples/documented/java_modular/mkl_binclass_modular.java</b>
\verbinclude mkl_binclass_modular.java

\li <b>examples/documented/java_modular/mkl_multiclass_modular.java</b>
\verbinclude mkl_multiclass_modular.java

\section java_modular_preprocessor_examples Preprocessor


\li <b>examples/documented/java_modular/preprocessor_kernelpca_modular.java</b>
\verbinclude preprocessor_kernelpca_modular.java

\li <b>examples/documented/java_modular/preprocessor_logplusone_modular.java</b>
\verbinclude preprocessor_logplusone_modular.java

\li <b>examples/documented/java_modular/preprocessor_normone_modular.java</b>
\verbinclude preprocessor_normone_modular.java

\li <b>examples/documented/java_modular/preprocessor_pca_modular.java</b>
\verbinclude preprocessor_pca_modular.java

\li <b>examples/documented/java_modular/preprocessor_prunevarsubmean_modular.java</b>
\verbinclude preprocessor_prunevarsubmean_modular.java

\li <b>examples/documented/java_modular/preprocessor_randomfouriergausspreproc_modular.java</b>
\verbinclude preprocessor_randomfouriergausspreproc_modular.java

\li <b>examples/documented/java_modular/preprocessor_sortulongstring_modular.java</b>
\verbinclude preprocessor_sortulongstring_modular.java

\li <b>examples/documented/java_modular/preprocessor_sortwordstring_modular.java</b>
\verbinclude preprocessor_sortwordstring_modular.java

\section java_modular_regression_examples Regression


\li <b>examples/documented/java_modular/regression_krr_modular.java</b>
\verbinclude regression_krr_modular.java

\li <b>examples/documented/java_modular/regression_libsvr_modular.java</b>
\verbinclude regression_libsvr_modular.java

\li <b>examples/documented/java_modular/regression_svrlight_modular.java</b>
\verbinclude regression_svrlight_modular.java

\section java_modular_serialization_examples Serialization


\li <b>examples/documented/java_modular/serialization_complex_example.java</b>
\verbinclude serialization_complex_example.java

\li <b>examples/documented/java_modular/serialization_svmlight_modular.java</b>
\verbinclude serialization_svmlight_modular.java

\section java_modular_tests_examples Tests


\li <b>examples/documented/java_modular/tests_check_commwordkernel_memleak_modular.java</b>
\verbinclude tests_check_commwordkernel_memleak_modular.java
*/