1 /*! \page r_modular_examples Examples for R Modular Interface
3 This page lists ready to run shogun examples for the R Modular interface.
5 \li \subpage r_modular_classifier_examples
6 \li \subpage r_modular_distribution_examples
7 \li \subpage r_modular_kernel_examples
8 \li \subpage r_modular_mkl_examples
9 \li \subpage r_modular_preprocessor_examples
11 To run the examples issue
13 R -f name_of_example.R
16 or start R and then type
18 source('name_of_example.R')
21 \section r_modular_classifier_examples Classifier
24 \li <b>examples/documented/r_modular/classifier_gmnpsvm_modular.R</b>
25 \verbinclude classifier_gmnpsvm_modular.R
27 \li <b>examples/documented/r_modular/classifier_gpbtsvm_modular.R</b>
28 \verbinclude classifier_gpbtsvm_modular.R
30 \li <b>examples/documented/r_modular/classifier_knn_modular.R</b>
31 \verbinclude classifier_knn_modular.R
33 \li <b>examples/documented/r_modular/classifier_lda_modular.R</b>
34 \verbinclude classifier_lda_modular.R
36 \li <b>examples/documented/r_modular/classifier_liblinear_modular.R</b>
37 \verbinclude classifier_liblinear_modular.R
39 \li <b>examples/documented/r_modular/classifier_libsvm_modular.R</b>
40 \verbinclude classifier_libsvm_modular.R
42 \li <b>examples/documented/r_modular/classifier_libsvmoneclass_modular.R</b>
43 \verbinclude classifier_libsvmoneclass_modular.R
45 \li <b>examples/documented/r_modular/classifier_mpdsvm_modular.R</b>
46 \verbinclude classifier_mpdsvm_modular.R
48 \li <b>examples/documented/r_modular/classifier_multiclasslibsvm_modular.R</b>
49 \verbinclude classifier_multiclasslibsvm_modular.R
51 \li <b>examples/documented/r_modular/classifier_perceptron_modular.R</b>
52 \verbinclude classifier_perceptron_modular.R
54 \li <b>examples/documented/r_modular/classifier_svmlight_modular.R</b>
55 \verbinclude classifier_svmlight_modular.R
57 \li <b>examples/documented/r_modular/classifier_svmlin_modular.R</b>
58 \verbinclude classifier_svmlin_modular.R
60 \li <b>examples/documented/r_modular/classifier_svmocas_modular.R</b>
61 \verbinclude classifier_svmocas_modular.R
63 \li <b>examples/documented/r_modular/classifier_svmsgd_modular.R</b>
64 \verbinclude classifier_svmsgd_modular.R
66 \section r_modular_distribution_examples Distribution
69 \li <b>examples/documented/r_modular/distribution_histogram_modular.R</b>
70 \verbinclude distribution_histogram_modular.R
72 \li <b>examples/documented/r_modular/distribution_hmm_modular.R</b>
73 \verbinclude distribution_hmm_modular.R
75 \li <b>examples/documented/r_modular/distribution_linearhmm_modular.R</b>
76 \verbinclude distribution_linearhmm_modular.R
78 \section r_modular_kernel_examples Kernel
81 \li <b>examples/documented/r_modular/kernel_auc_modular.R</b>
82 \verbinclude kernel_auc_modular.R
84 \li <b>examples/documented/r_modular/kernel_chi2_modular.R</b>
85 \verbinclude kernel_chi2_modular.R
87 \li <b>examples/documented/r_modular/kernel_combined_modular.R</b>
88 \verbinclude kernel_combined_modular.R
90 \li <b>examples/documented/r_modular/kernel_comm_ulong_string_modular.R</b>
91 \verbinclude kernel_comm_ulong_string_modular.R
93 \li <b>examples/documented/r_modular/kernel_comm_word_string_modular.R</b>
94 \verbinclude kernel_comm_word_string_modular.R
96 \li <b>examples/documented/r_modular/kernel_const_modular.R</b>
97 \verbinclude kernel_const_modular.R
99 \li <b>examples/documented/r_modular/kernel_custom_modular.R</b>
100 \verbinclude kernel_custom_modular.R
102 \li <b>examples/documented/r_modular/kernel_diag_modular.R</b>
103 \verbinclude kernel_diag_modular.R
105 \li <b>examples/documented/r_modular/kernel_distance_modular.R</b>
106 \verbinclude kernel_distance_modular.R
108 \li <b>examples/documented/r_modular/kernel_fixed_degree_string_modular.R</b>
109 \verbinclude kernel_fixed_degree_string_modular.R
111 \li <b>examples/documented/r_modular/kernel_gaussian_modular.R</b>
112 \verbinclude kernel_gaussian_modular.R
114 \li <b>examples/documented/r_modular/kernel_gaussian_shift_modular.R</b>
115 \verbinclude kernel_gaussian_shift_modular.R
117 \li <b>examples/documented/r_modular/kernel_histogramword_modular.R</b>
118 \verbinclude kernel_histogramword_modular.R
120 \li <b>examples/documented/r_modular/kernel_linear_byte_modular.R</b>
121 \verbinclude kernel_linear_byte_modular.R
123 \li <b>examples/documented/r_modular/kernel_linear_modular.R</b>
124 \verbinclude kernel_linear_modular.R
126 \li <b>examples/documented/r_modular/kernel_linear_string_modular.R</b>
127 \verbinclude kernel_linear_string_modular.R
129 \li <b>examples/documented/r_modular/kernel_linear_word_modular.R</b>
130 \verbinclude kernel_linear_word_modular.R
132 \li <b>examples/documented/r_modular/kernel_local_alignment_string_modular.R</b>
133 \verbinclude kernel_local_alignment_string_modular.R
135 \li <b>examples/documented/r_modular/kernel_localityimprovedstring_modular.R</b>
136 \verbinclude kernel_localityimprovedstring_modular.R
138 \li <b>examples/documented/r_modular/kernel_oligo_string_modular.R</b>
139 \verbinclude kernel_oligo_string_modular.R
141 \li <b>examples/documented/r_modular/kernel_poly_modular.R</b>
142 \verbinclude kernel_poly_modular.R
144 \li <b>examples/documented/r_modular/kernel_polymatchstring_modular.R</b>
145 \verbinclude kernel_polymatchstring_modular.R
147 \li <b>examples/documented/r_modular/kernel_polymatchword_modular.R</b>
148 \verbinclude kernel_polymatchword_modular.R
150 \li <b>examples/documented/r_modular/kernel_sigmoid_modular.R</b>
151 \verbinclude kernel_sigmoid_modular.R
153 \li <b>examples/documented/r_modular/kernel_simple_locality_improved_string_modular.R</b>
154 \verbinclude kernel_simple_locality_improved_string_modular.R
156 \li <b>examples/documented/r_modular/kernel_sparsegaussian_modular.R</b>
157 \verbinclude kernel_sparsegaussian_modular.R
159 \li <b>examples/documented/r_modular/kernel_sparselinear_modular.R</b>
160 \verbinclude kernel_sparselinear_modular.R
162 \li <b>examples/documented/r_modular/kernel_sparsepoly_modular.R</b>
163 \verbinclude kernel_sparsepoly_modular.R
165 \li <b>examples/documented/r_modular/kernel_top_modular.R</b>
166 \verbinclude kernel_top_modular.R
168 \li <b>examples/documented/r_modular/kernel_weighted_comm_word_string_modular.R</b>
169 \verbinclude kernel_weighted_comm_word_string_modular.R
171 \li <b>examples/documented/r_modular/kernel_weighted_degree_position_string_modular.R</b>
172 \verbinclude kernel_weighted_degree_position_string_modular.R
174 \li <b>examples/documented/r_modular/kernel_weighteddegreestring_modular.R</b>
175 \verbinclude kernel_weighteddegreestring_modular.R
177 \li <b>examples/documented/r_modular/kernel_wordmatch_modular.R</b>
178 \verbinclude kernel_wordmatch_modular.R
180 \section r_modular_mkl_examples Mkl
183 \li <b>examples/documented/r_modular/mkl_multiclass_modular.R</b>
184 \verbinclude mkl_multiclass_modular.R
186 \section r_modular_preprocessor_examples Preprocessor
189 \li <b>examples/documented/r_modular/preprocessor_logplusone_modular.R</b>
190 \verbinclude preprocessor_logplusone_modular.R
192 \li <b>examples/documented/r_modular/preprocessor_normone_modular.R</b>
193 \verbinclude preprocessor_normone_modular.R
195 \li <b>examples/documented/r_modular/preprocessor_prunevarsubmean_modular.R</b>
196 \verbinclude preprocessor_prunevarsubmean_modular.R