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CAlphabet Member List

This is the complete list of members for CAlphabet, including all inherited members.

add_byte_to_histogram(uint8_t p)CAlphabet
add_string_to_histogram(T *p, int64_t len)CAlphabet
alphabetCAlphabetprotected
alphabet_namesCAlphabetstatic
B_0CAlphabetstatic
B_ACAlphabetstatic
B_CCAlphabetstatic
B_GCAlphabetstatic
B_TCAlphabetstatic
build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict)CSGObject
CAlphabet()CAlphabet
CAlphabet(char *alpha, int32_t len)CAlphabet
CAlphabet(EAlphabet alpha)CAlphabet
CAlphabet(CAlphabet *alpha)CAlphabet
check_alphabet(bool print_error=true)CAlphabet
check_alphabet_size(bool print_error=true)CAlphabet
clear_histogram()CAlphabet
clone()CSGObjectvirtual
copy_histogram(CAlphabet *src)CAlphabetprotected
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() const CSGObjectvirtual
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
get_alphabet() const CAlphabet
get_alphabet_name(EAlphabet alphabet)CAlphabetstatic
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_histogram()CAlphabet
get_max_value_in_histogram()CAlphabet
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CAlphabetvirtual
get_num_bits() const CAlphabet
get_num_bits_in_histogram()CAlphabet
get_num_symbols() const CAlphabet
get_num_symbols_in_histogram()CAlphabet
histogramCAlphabetprotected
init_map_table()CAlphabetprotected
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
is_valid(uint8_t c)CAlphabet
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
load_serializable_post()CAlphabetprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_gradient_parametersCSGObject
m_hashCSGObject
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
maptable_to_binCAlphabetprotected
maptable_to_charCAlphabetprotected
MAPTABLE_UNDEFCAlphabetstatic
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
num_bitsCAlphabetprotected
num_symbolsCAlphabetprotected
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
print_histogram()CAlphabet
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
remap_to_bin(uint8_t c)CAlphabet
remap_to_char(uint8_t c)CAlphabet
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_alphabet(EAlphabet alpha)CAlphabet
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
SGRefObject()SGRefObject
SGRefObject(const SGRefObject &orig)SGRefObject
shallow_copy() const CSGObjectvirtual
translate_from_single_order(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val)CAlphabetstatic
translate_from_single_order(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabetstatic
translate_from_single_order(float32_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
translate_from_single_order(float64_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
translate_from_single_order(floatmax_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
translate_from_single_order_reversed(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val)CAlphabetstatic
translate_from_single_order_reversed(ST *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabetstatic
translate_from_single_order_reversed(float32_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
translate_from_single_order_reversed(float64_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
translate_from_single_order_reversed(floatmax_t *obs, int32_t sequence_length, int32_t start, int32_t p_order, int32_t max_val, int32_t gap)CAlphabet
unset_generic()CSGObject
update_parameter_hash()CSGObjectvirtual
valid_charsCAlphabetprotected
versionCSGObject
~CAlphabet()CAlphabetvirtual
~CSGObject()CSGObjectvirtual
~SGRefObject()SGRefObjectvirtual

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