| apply(CFeatures *data=NULL) | CMachine | virtual | 
  | apply_binary(CFeatures *data) | CNeuralNetwork | virtual | 
  | apply_latent(CFeatures *data=NULL) | CMachine | virtual | 
  | apply_locked(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_locked_binary(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_locked_latent(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_locked_multiclass(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_locked_regression(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_locked_structured(SGVector< index_t > indices) | CMachine | virtual | 
  | apply_multiclass(CFeatures *data) | CNeuralNetwork | virtual | 
  | apply_one(int32_t i) | CMachine | virtual | 
  | apply_regression(CFeatures *data) | CNeuralNetwork | virtual | 
  | apply_structured(CFeatures *data=NULL) | CMachine | virtual | 
  | build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict) | CSGObject |  | 
  | CAutoencoder() | CAutoencoder |  | 
  | CAutoencoder(int32_t num_inputs, CNeuralLayer *hidden_layer, CNeuralLayer *decoding_layer=NULL, float64_t sigma=0.01) | CAutoencoder |  | 
  | CAutoencoder(int32_t input_width, int32_t input_height, int32_t input_num_channels, CNeuralConvolutionalLayer *hidden_layer, CNeuralConvolutionalLayer *decoding_layer, float64_t sigma=0.01) | CAutoencoder |  | 
  | check_gradients(float64_t approx_epsilon=1.0e-3, float64_t s=1.0e-9) | CNeuralNetwork | virtual | 
  | clone() | CSGObject | virtual | 
  | CMachine() | CMachine |  | 
  | CNeuralNetwork() | CNeuralNetwork |  | 
  | CNeuralNetwork(CDynamicObjectArray *layers) | CNeuralNetwork |  | 
  | compute_error(SGMatrix< float64_t > targets) | CAutoencoder | protectedvirtual | 
  | shogun::CNeuralNetwork::compute_error(SGMatrix< float64_t > inputs, SGMatrix< float64_t > targets) | CNeuralNetwork | protectedvirtual | 
  | compute_gradients(SGMatrix< float64_t > inputs, SGMatrix< float64_t > targets, SGVector< float64_t > gradients) | CNeuralNetwork | protectedvirtual | 
  | connect(int32_t i, int32_t j) | CNeuralNetwork | virtual | 
  | CSGObject() | CSGObject |  | 
  | CSGObject(const CSGObject &orig) | CSGObject |  | 
  | data_lock(CLabels *labs, CFeatures *features) | CMachine | virtual | 
  | data_unlock() | CMachine | virtual | 
  | deep_copy() const  | CSGObject | virtual | 
  | disconnect(int32_t i, int32_t j) | CNeuralNetwork | virtual | 
  | disconnect_all() | CNeuralNetwork | virtual | 
  | equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false) | CSGObject | virtual | 
  | features_to_matrix(CFeatures *features) | CNeuralNetwork | protected | 
  | forward_propagate(CFeatures *data, int32_t j=-1) | CNeuralNetwork | protectedvirtual | 
  | forward_propagate(SGMatrix< float64_t > inputs, int32_t j=-1) | CNeuralNetwork | protectedvirtual | 
  | get(const Tag< T > &_tag) const  | CSGObject |  | 
  | get(const std::string &name) const  | CSGObject |  | 
  | get_classifier_type() | CNeuralNetwork | virtual | 
  | get_dropout_hidden() const  | CNeuralNetwork |  | 
  | get_dropout_input() const  | CNeuralNetwork |  | 
  | get_epsilon() const  | CNeuralNetwork |  | 
  | get_gd_error_damping_coeff() const  | CNeuralNetwork |  | 
  | get_gd_learning_rate() const  | CNeuralNetwork |  | 
  | get_gd_learning_rate_decay() const  | CNeuralNetwork |  | 
  | get_gd_mini_batch_size() const  | CNeuralNetwork |  | 
  | get_gd_momentum() const  | CNeuralNetwork |  | 
  | get_global_io() | CSGObject |  | 
  | get_global_parallel() | CSGObject |  | 
  | get_global_version() | CSGObject |  | 
  | get_l1_coefficient() const  | CNeuralNetwork |  | 
  | get_l2_coefficient() const  | CNeuralNetwork |  | 
  | get_labels() | CMachine | virtual | 
  | get_layer(int32_t i) | CNeuralNetwork | protected | 
  | get_layer_parameters(int32_t i) | CNeuralNetwork |  | 
  | get_layers() | CNeuralNetwork |  | 
  | get_machine_problem_type() const  | CNeuralNetwork | virtual | 
  | get_max_norm() const  | CNeuralNetwork |  | 
  | get_max_num_epochs() const  | CNeuralNetwork |  | 
  | get_max_train_time() | CMachine |  | 
  | get_modelsel_names() | CSGObject |  | 
  | get_modsel_param_descr(const char *param_name) | CSGObject |  | 
  | get_modsel_param_index(const char *param_name) | CSGObject |  | 
  | get_name() const  | CAutoencoder | virtual | 
  | get_noise_parameter() | CAutoencoder |  | 
  | get_noise_type() | CAutoencoder |  | 
  | get_num_inputs() | CNeuralNetwork |  | 
  | get_num_outputs() | CNeuralNetwork |  | 
  | get_num_parameters() | CNeuralNetwork |  | 
  | get_optimization_method() const  | CNeuralNetwork |  | 
  | get_parameters() | CNeuralNetwork |  | 
  | get_solver_type() | CMachine |  | 
  | has(const std::string &name) const  | CSGObject |  | 
  | has(const Tag< T > &tag) const  | CSGObject |  | 
  | has(const std::string &name) const  | CSGObject |  | 
  | initialize_neural_network(float64_t sigma=0.01f) | CNeuralNetwork | virtual | 
  | io | CSGObject |  | 
  | is_data_locked() const  | CMachine |  | 
  | is_generic(EPrimitiveType *generic) const  | CSGObject | virtual | 
  | is_label_valid(CLabels *lab) const  | CNeuralNetwork | protectedvirtual | 
  | labels_to_matrix(CLabels *labs) | CNeuralNetwork | protected | 
  | load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual | 
  | load_serializable_post() | CSGObject | protectedvirtual | 
  | load_serializable_pre() | CSGObject | protectedvirtual | 
  | m_adj_matrix | CNeuralNetwork | protected | 
  | m_batch_size | CNeuralNetwork | protected | 
  | m_contraction_coefficient | CAutoencoder | protected | 
  | m_data_locked | CMachine | protected | 
  | m_dropout_hidden | CNeuralNetwork | protected | 
  | m_dropout_input | CNeuralNetwork | protected | 
  | m_epsilon | CNeuralNetwork | protected | 
  | m_gd_error_damping_coeff | CNeuralNetwork | protected | 
  | m_gd_learning_rate | CNeuralNetwork | protected | 
  | m_gd_learning_rate_decay | CNeuralNetwork | protected | 
  | m_gd_mini_batch_size | CNeuralNetwork | protected | 
  | m_gd_momentum | CNeuralNetwork | protected | 
  | m_gradient_parameters | CSGObject |  | 
  | m_hash | CSGObject |  | 
  | m_index_offsets | CNeuralNetwork | protected | 
  | m_is_training | CNeuralNetwork | protected | 
  | m_l1_coefficient | CNeuralNetwork | protected | 
  | m_l2_coefficient | CNeuralNetwork | protected | 
  | m_labels | CMachine | protected | 
  | m_layers | CNeuralNetwork | protected | 
  | m_max_norm | CNeuralNetwork | protected | 
  | m_max_num_epochs | CNeuralNetwork | protected | 
  | m_max_train_time | CMachine | protected | 
  | m_model_selection_parameters | CSGObject |  | 
  | m_noise_parameter | CAutoencoder | protected | 
  | m_noise_type | CAutoencoder | protected | 
  | m_num_inputs | CNeuralNetwork | protected | 
  | m_num_layers | CNeuralNetwork | protected | 
  | m_optimization_method | CNeuralNetwork | protected | 
  | m_param_regularizable | CNeuralNetwork | protected | 
  | m_parameters | CSGObject |  | 
  | m_params | CNeuralNetwork | protected | 
  | m_solver_type | CMachine | protected | 
  | m_store_model_features | CMachine | protected | 
  | m_total_num_parameters | CNeuralNetwork | protected | 
  | parallel | CSGObject |  | 
  | parameter_hash_changed() | CSGObject | virtual | 
  | post_lock(CLabels *labs, CFeatures *features) | CMachine | virtual | 
  | print_modsel_params() | CSGObject |  | 
  | print_serializable(const char *prefix="") | CSGObject | virtual | 
  | quick_connect() | CNeuralNetwork | virtual | 
  | reconstruct(CDenseFeatures< float64_t > *data) | CAutoencoder | virtual | 
  | register_param(Tag< T > &_tag, const T &value) | CSGObject | protected | 
  | register_param(const std::string &name, const T &value) | CSGObject | protected | 
  | save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual | 
  | save_serializable_post() | CSGObject | protectedvirtual | 
  | save_serializable_pre() | CSGObject | protectedvirtual | 
  | set(const Tag< T > &_tag, const T &value) | CSGObject |  | 
  | set(const std::string &name, const T &value) | CSGObject |  | 
  | set_batch_size(int32_t batch_size) | CNeuralNetwork | protectedvirtual | 
  | set_contraction_coefficient(float64_t coeff) | CAutoencoder | virtual | 
  | set_dropout_hidden(float64_t dropout_hidden) | CNeuralNetwork |  | 
  | set_dropout_input(float64_t dropout_input) | CNeuralNetwork |  | 
  | set_epsilon(float64_t epsilon) | CNeuralNetwork |  | 
  | set_gd_error_damping_coeff(float64_t gd_error_damping_coeff) | CNeuralNetwork |  | 
  | set_gd_learning_rate(float64_t gd_learning_rate) | CNeuralNetwork |  | 
  | set_gd_learning_rate_decay(float64_t gd_learning_rate_decay) | CNeuralNetwork |  | 
  | set_gd_mini_batch_size(int32_t gd_mini_batch_size) | CNeuralNetwork |  | 
  | set_gd_momentum(float64_t gd_momentum) | CNeuralNetwork |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_generic() | CSGObject |  | 
  | set_global_io(SGIO *io) | CSGObject |  | 
  | set_global_parallel(Parallel *parallel) | CSGObject |  | 
  | set_global_version(Version *version) | CSGObject |  | 
  | set_l1_coefficient(float64_t l1_coefficient) | CNeuralNetwork |  | 
  | set_l2_coefficient(float64_t l2_coefficient) | CNeuralNetwork |  | 
  | set_labels(CLabels *lab) | CNeuralNetwork | virtual | 
  | set_layers(CDynamicObjectArray *layers) | CNeuralNetwork | virtual | 
  | set_max_norm(float64_t max_norm) | CNeuralNetwork |  | 
  | set_max_num_epochs(int32_t max_num_epochs) | CNeuralNetwork |  | 
  | set_max_train_time(float64_t t) | CMachine |  | 
  | set_noise_parameter(float64_t noise_parameter) | CAutoencoder |  | 
  | set_noise_type(EAENoiseType noise_type) | CAutoencoder |  | 
  | set_optimization_method(ENNOptimizationMethod optimization_method) | CNeuralNetwork |  | 
  | set_solver_type(ESolverType st) | CMachine |  | 
  | set_store_model_features(bool store_model) | CMachine | virtual | 
  | shallow_copy() const  | CSGObject | virtual | 
  | store_model_features() | CMachine | protectedvirtual | 
  | supports_locking() const  | CMachine | virtual | 
  | train(CFeatures *data) | CAutoencoder | virtual | 
  | train_gradient_descent(SGMatrix< float64_t > inputs, SGMatrix< float64_t > targets) | CNeuralNetwork | protectedvirtual | 
  | train_lbfgs(SGMatrix< float64_t > inputs, SGMatrix< float64_t > targets) | CNeuralNetwork | protectedvirtual | 
  | train_locked(SGVector< index_t > indices) | CMachine | virtual | 
  | train_machine(CFeatures *data=NULL) | CNeuralNetwork | protectedvirtual | 
  | train_require_labels() const  | CMachine | protectedvirtual | 
  | transform(CDenseFeatures< float64_t > *data) | CAutoencoder | virtual | 
  | unset_generic() | CSGObject |  | 
  | update_parameter_hash() | CSGObject | virtual | 
  | version | CSGObject |  | 
  | ~CAutoencoder() | CAutoencoder | virtual | 
  | ~CMachine() | CMachine | virtual | 
  | ~CNeuralNetwork() | CNeuralNetwork | virtual | 
  | ~CSGObject() | CSGObject | virtual |