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CHMM Member List

This is the complete list of members for CHMM, including all inherited members.

add_states(int32_t num_states, float64_t default_val=0)CHMM
all_pat_probCHMMprotected
all_path_prob_updatedCHMMprotected
alloc_state_dependend_arrays()CHMM
alpha_cacheCHMMprotected
append_model(CHMM *append_model, float64_t *cur_out, float64_t *app_out)CHMM
append_model(CHMM *append_model)CHMM
arrayN1CHMMprotected
arrayN2CHMMprotected
backward(int32_t time, int32_t state, int32_t dimension)CHMMprotected
backward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
backward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
baum_welch_viterbi_train(BaumWelchViterbiType type)CHMM
best_path(int32_t dimension)CHMM
beta_cacheCHMMprotected
build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict)CSGObject
CDistribution()CDistribution
check_model_derivatives()CHMM
check_model_derivatives_combined()CHMM
CHMM()CHMM
CHMM(int32_t N, int32_t M, Model *model, float64_t PSEUDO)CHMM
CHMM(CStringFeatures< uint16_t > *obs, int32_t N, int32_t M, float64_t PSEUDO)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, float64_t *a)CHMM
CHMM(int32_t N, float64_t *p, float64_t *q, int32_t num_trans, float64_t *a_trans)CHMM
CHMM(FILE *model_file, float64_t PSEUDO)CHMM
CHMM(CHMM *h)CHMM
chop(float64_t value)CHMM
clear_model()CHMM
clear_model_defined()CHMM
clone()CSGObjectvirtual
close_bracket(FILE *file)CHMMprotected
comma_or_space(FILE *file)CHMMprotected
conv_itCHMMprotected
convert_to_log()CHMM
copy_model(CHMM *l)CHMM
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() const CSGObjectvirtual
end_state_distribution_qCHMMprotected
epsilonCHMMprotected
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
error(int32_t p_line, const char *str)CHMMprotected
estimate_model_baum_welch(CHMM *train)CHMM
estimate_model_baum_welch_defined(CHMM *train)CHMM
estimate_model_baum_welch_old(CHMM *train)CHMM
estimate_model_baum_welch_trans(CHMM *train)CHMM
estimate_model_viterbi(CHMM *train)CHMM
estimate_model_viterbi_defined(CHMM *train)CHMM
featuresCDistributionprotected
forward(int32_t time, int32_t state, int32_t dimension)CHMMprotected
forward_comp(int32_t time, int32_t state, int32_t dimension)CHMM
forward_comp_old(int32_t time, int32_t state, int32_t dimension)CHMM
free_state_dependend_arrays()CHMM
get_A(T_STATES line_, T_STATES column) const CHMM
get_a(T_STATES line_, T_STATES column) const CHMM
get_B(T_STATES line_, uint16_t column) const CHMM
get_b(T_STATES line_, uint16_t column) const CHMM
get_best_path_state(int32_t dim, int32_t t)CHMM
get_derivative(int32_t num_param, int32_t num_example)CDistributionvirtual
get_epsilon()CHMM
get_features()CDistributionvirtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_iterations()CHMM
get_likelihood_example(int32_t num_example)CDistributionvirtual
get_likelihood_for_all_examples()CDistributionvirtual
get_log_derivative(int32_t num_param, int32_t num_example)CHMMvirtual
get_log_likelihood()CDistributionvirtual
get_log_likelihood_example(int32_t num_example)CHMMvirtual
get_log_likelihood_sample()CDistributionvirtual
get_log_model_parameter(int32_t num_param)CHMMvirtual
get_M() const CHMM
get_model_parameter(int32_t num_param)CDistributionvirtual
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_N() const CHMM
get_name() const CHMMvirtual
get_num_model_parameters()CHMMvirtual
get_num_relevant_model_parameters()CDistributionvirtual
get_numbuffer(FILE *file, char *buffer, int32_t length)CHMMprotected
get_observations()CHMM
get_p(T_STATES offset) const CHMM
get_path(int32_t dim, float64_t &prob)CHMM
get_pseudo() const CHMM
get_pseudo_count()CDistributionvirtual
get_psi(int32_t time, T_STATES state, int32_t dimension) const CHMM
get_q(T_STATES offset) const CHMM
get_status() const CHMM
GOTaCHMMprotectedstatic
GOTbCHMMprotectedstatic
GOTconst_aCHMMprotectedstatic
GOTconst_bCHMMprotectedstatic
GOTconst_pCHMMprotectedstatic
GOTconst_qCHMMprotectedstatic
GOTlearn_aCHMMprotectedstatic
GOTlearn_bCHMMprotectedstatic
GOTlearn_pCHMMprotectedstatic
GOTlearn_qCHMMprotectedstatic
GOTMCHMMprotectedstatic
GOTNCHMMprotectedstatic
GOTOCHMMprotectedstatic
GOTpCHMMprotectedstatic
GOTqCHMMprotectedstatic
init_model_defined()CHMM
init_model_random()CHMM
initial_state_distribution_pCHMMprotected
initialize(Model *model, float64_t PSEUDO, FILE *model_file=NULL)CHMM
invalidate_model()CHMM
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
iteration_countCHMMprotected
iterationsCHMMprotected
lineCHMMprotected
linear_model_derivative(T_STATES i, uint16_t j, int32_t dimension)CHMM
linear_model_probability(int32_t dimension)CHMM
linear_train(bool right_align=false)CHMM
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_definitions(FILE *file, bool verbose, bool initialize=true)CHMM
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_model(FILE *file)CHMM
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
loglikelihoodCHMMprotected
MCHMMprotected
m_gradient_parametersCSGObject
m_hashCSGObject
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
mod_probCHMMprotected
mod_prob_updatedCHMMprotected
modelCHMMprotected
model_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
model_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
model_derivative_p(T_STATES i, int32_t dimension)CHMM
model_derivative_q(T_STATES i, int32_t dimension)CHMM
model_probability(int32_t dimension=-1)CHMM
model_probability_comp()CHMM
NCHMMprotected
normalize(bool keep_dead_states=false)CHMM
observation_matrix_bCHMMprotected
observation_matrix_BCHMMprotected
obtain_from_generic(CSGObject *object)CDistributionstatic
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
open_bracket(FILE *file)CHMMprotected
output_model(bool verbose=false)CHMM
output_model_defined(bool verbose=false)CHMM
p_observationsCHMMprotected
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
pat_probCHMMprotected
pathCHMMprotected
path_deriv_dimensionCHMMprotected
path_deriv_updatedCHMMprotected
path_derivative_a(T_STATES i, T_STATES j, int32_t dimension)CHMM
path_derivative_b(T_STATES i, uint16_t j, int32_t dimension)CHMM
path_derivative_p(T_STATES i, int32_t dimension)CHMM
path_derivative_q(T_STATES i, int32_t dimension)CHMM
path_prob_dimensionCHMMprotected
path_prob_updatedCHMMprotected
permutation_entropy(int32_t window_width, int32_t sequence_number)CHMM
prepare_path_derivative(int32_t dim)CHMMprotected
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
PSEUDOCHMMprotected
pseudo_countCDistributionprotected
reused_cachesCHMMprotected
save_likelihood(FILE *file)CHMM
save_likelihood_bin(FILE *file)CHMM
save_model(FILE *file)CHMM
save_model_bin(FILE *file)CHMM
save_model_derivatives(FILE *file)CHMM
save_model_derivatives_bin(FILE *file)CHMM
save_path(FILE *file)CHMM
save_path_derivatives(FILE *file)CHMM
save_path_derivatives_bin(FILE *file)CHMM
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_A(T_STATES line_, T_STATES column, float64_t value)CHMM
set_a(T_STATES line_, T_STATES column, float64_t value)CHMM
set_b(T_STATES line_, uint16_t column, float64_t value)CHMM
set_B(T_STATES line_, uint16_t column, float64_t value)CHMM
set_epsilon(float64_t eps)CHMM
set_features(CFeatures *f)CDistributionvirtual
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_iterations(int32_t num)CHMM
set_observation_nocache(CStringFeatures< uint16_t > *obs)CHMM
set_observations(CStringFeatures< uint16_t > *obs, CHMM *hmm=NULL)CHMM
set_p(T_STATES offset, float64_t value)CHMM
set_pseudo(float64_t pseudo)CHMM
set_pseudo_count(float64_t pseudo)CDistributionvirtual
set_psi(int32_t time, T_STATES state, T_STATES value, int32_t dimension)CHMM
set_q(T_STATES offset, float64_t value)CHMM
SGRefObject()SGRefObject
SGRefObject(const SGRefObject &orig)SGRefObject
shallow_copy() const CSGObjectvirtual
state_probability(int32_t time, int32_t state, int32_t dimension)CHMM
states_per_observation_psiCHMMprotected
statusCHMMprotected
train(CFeatures *data=NULL)CHMMvirtual
transition_matrix_aCHMMprotected
transition_matrix_ACHMMprotected
transition_probability(int32_t time, int32_t state_i, int32_t state_j, int32_t dimension)CHMM
unset_generic()CSGObject
update_parameter_hash()CSGObjectvirtual
update_params_em(float64_t *alpha_k, int32_t len)CDistributionvirtual
versionCSGObject
~CDistribution()CDistributionvirtual
~CHMM()CHMMvirtual
~CSGObject()CSGObjectvirtual
~SGRefObject()SGRefObjectvirtual

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