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CPositionalPWM Member List

This is the complete list of members for CPositionalPWM, including all inherited members.

build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict)CSGObject
CDistribution()CDistribution
clone()CSGObjectvirtual
compute_scoring(int32_t max_degree)CPositionalPWM
compute_w(int32_t num_pos)CPositionalPWM
CPositionalPWM()CPositionalPWM
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() const CSGObjectvirtual
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
featuresCDistributionprotected
get_derivative(int32_t num_param, int32_t num_example)CDistributionvirtual
get_features()CDistributionvirtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_likelihood_example(int32_t num_example)CDistributionvirtual
get_likelihood_for_all_examples()CDistributionvirtual
get_log_derivative(int32_t num_param, int32_t num_example)CPositionalPWMvirtual
get_log_likelihood()CDistributionvirtual
get_log_likelihood_example(int32_t num_example)CPositionalPWMvirtual
get_log_likelihood_sample()CDistributionvirtual
get_log_likelihood_window(uint8_t *window, int32_t len, float64_t pos)CPositionalPWM
get_log_model_parameter(int32_t num_param)CPositionalPWMvirtual
get_mean()CPositionalPWMvirtual
get_model_parameter(int32_t num_param)CDistributionvirtual
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CPositionalPWMvirtual
get_num_model_parameters()CPositionalPWMvirtual
get_num_relevant_model_parameters()CDistributionvirtual
get_pseudo_count()CDistributionvirtual
get_pwm() const CPositionalPWMvirtual
get_scoring(int32_t d)CPositionalPWMvirtual
get_sigma()CPositionalPWMvirtual
get_w() const CPositionalPWMvirtual
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_gradient_parametersCSGObject
m_hashCSGObject
m_meanCPositionalPWMprotected
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
m_poimCPositionalPWMprotected
m_pwmCPositionalPWMprotected
m_sigmaCPositionalPWMprotected
m_wCPositionalPWMprotected
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
pseudo_countCDistributionprotected
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_features(CFeatures *f)CDistributionvirtual
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_mean(float64_t mean)CPositionalPWMvirtual
set_pseudo_count(float64_t pseudo)CDistributionvirtual
set_pwm(SGMatrix< float64_t > pwm)CPositionalPWMvirtual
set_sigma(float64_t sigma)CPositionalPWMvirtual
SGRefObject()SGRefObject
SGRefObject(const SGRefObject &orig)SGRefObject
shallow_copy() const CSGObjectvirtual
train(CFeatures *data=NULL)CPositionalPWMvirtual
unset_generic()CSGObject
update_parameter_hash()CSGObjectvirtual
versionCSGObject
~CDistribution()CDistributionvirtual
~CPositionalPWM()CPositionalPWMvirtual
~CSGObject()CSGObjectvirtual
~SGRefObject()SGRefObjectvirtual

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