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CTrie< Trie > Member List

This is the complete list of members for CTrie< Trie >, including all inherited members.

add_example_to_tree_mismatch_recursion(int32_t tree, int32_t i, float64_t alpha, int32_t *vec, int32_t len_rem, int32_t degree_rec, int32_t mismatch_rec, int32_t max_mismatch, float64_t *weights)CTrie< Trie >
add_to_trie(int32_t i, int32_t seq_offset, int32_t *vec, float32_t alpha, float64_t *weights, bool degree_times_position_weights)CTrie< Trie >
build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict)CSGObject
check_treemem()CTrie< Trie >
clone()CSGObjectvirtual
compact_nodes(int32_t start_node, int32_t depth, float64_t *weights)CTrie< Trie >
compare(const CTrie &other)CTrie< Trie >
compare_traverse(int32_t node, const CTrie &other, int32_t other_node)CTrie< Trie >
compute_abs_weights(int32_t &len)CTrie< Trie >
compute_abs_weights_tree(int32_t tree, int32_t depth)CTrie< Trie >
compute_by_tree_helper(int32_t *vec, int32_t len, int32_t seq_pos, int32_t tree_pos, int32_t weight_pos, float64_t *weights, bool degree_times_position_weights)CTrie< Trie >
compute_by_tree_helper(int32_t *vec, int32_t len, int32_t seq_pos, int32_t tree_pos, int32_t weight_pos, float64_t *LevelContrib, float64_t factor, int32_t mkl_stepsize, float64_t *weights, bool degree_times_position_weights)CTrie< Trie >
compute_scoring_helper(int32_t tree, int32_t i, int32_t j, float64_t weight, int32_t d, int32_t max_degree, int32_t num_feat, int32_t num_sym, int32_t sym_offset, int32_t offs, float64_t *result)CTrie< Trie >
count(const float64_t w, const int32_t depth, const struct TreeParseInfo info, const int32_t p, int32_t *x, const int32_t k)CTrie< Trie >
create(int32_t len, bool p_use_compact_terminal_nodes=true)CTrie< Trie >
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
CTrie()CTrie< Trie >
CTrie(int32_t d, bool p_use_compact_terminal_nodes=true)CTrie< Trie >
CTrie(const CTrie &to_copy)CTrie< Trie >
deep_copy() const CSGObjectvirtual
degreeCTrie< Trie >protected
delete_trees(bool p_use_compact_terminal_nodes=true)CTrie< Trie >
destroy()CTrie< Trie >
display_node(int32_t node) const CTrie< Trie >
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
fill_backtracking_table(int32_t pos, DynArray< ConsensusEntry > *prev, DynArray< ConsensusEntry > *cur, bool cumulative, float64_t *weights)CTrie< Trie >
fill_backtracking_table_recursion(Trie *tree, int32_t depth, uint64_t seq, float64_t value, DynArray< ConsensusEntry > *table, float64_t *weights)CTrie< Trie >
find_deepest_node(int32_t start_node, int32_t &deepest_node) const CTrie< Trie >
find_node(int32_t node, int32_t *trace, int32_t &trace_len) const CTrie< Trie >
get_cumulative_score(int32_t pos, uint64_t seq, int32_t deg, float64_t *weights)CTrie< Trie >
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CTrie< Trie >virtual
get_node(bool last_node=false)CTrie< Trie >
get_num_used_nodes()CTrie< Trie >
get_use_compact_terminal_nodes()CTrie< Trie >
get_weights_in_tree()CTrie< Trie >
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
lengthCTrie< Trie >protected
load_all_file_parameters(int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="")CSGObject
load_file_parameters(const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="")CSGObject
load_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_gradient_parametersCSGObject
m_hashCSGObject
m_model_selection_parametersCSGObject
m_parameter_mapCSGObject
m_parametersCSGObject
map_parameters(DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos)CSGObject
migrate(DynArray< TParameter * > *param_base, const SGParamInfo *target)CSGObjectprotectedvirtual
nofsKmersCTrie< Trie >protected
NUM_SYMSCTrie< Trie >
one_to_one_migration_prepare(DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL)CSGObjectprotectedvirtual
operator=(const CTrie &to_copy)CTrie< Trie >
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
POIMs_add_SLR(float64_t *const *const poims, const int32_t K, const int32_t debug)CTrie< Trie >
POIMs_add_SLR(float64_t *const *const poims, const int32_t K, const int32_t debug)CTrie< Trie >
POIMs_add_SLR_helper1(const int32_t nodeIdx, const int32_t depth, const int32_t i, const int32_t y0, float64_t *const *const poims, const int32_t K, const int32_t debug)CTrie< Trie >
POIMs_add_SLR_helper1(const int32_t nodeIdx, const int32_t depth, const int32_t i, const int32_t y0, float64_t *const *const poims, const int32_t K, const int32_t debug)CTrie< Trie >
POIMs_add_SLR_helper2(float64_t *const *const poims, const int32_t K, const int32_t k, const int32_t i, const int32_t y, const float64_t valW, const float64_t valS, const float64_t valL, const float64_t valR, const int32_t debug)CTrie< Trie >
POIMs_add_SLR_helper2(float64_t *const *const poims, const int32_t K, const int32_t k, const int32_t i, const int32_t y, const float64_t valW, const float64_t valS, const float64_t valL, const float64_t valR, const int32_t debug)CTrie< Trie >
POIMs_calc_SLR_helper1(const float64_t *const distrib, const int32_t i, const int32_t nodeIdx, int32_t left_tries_idx[4], const int32_t depth, int32_t const lastSym, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_calc_SLR_helper1(const float64_t *const distrib, const int32_t i, const int32_t nodeIdx, int32_t left_tries_idx[4], const int32_t depth, int32_t const lastSym, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_calc_SLR_helper2(const float64_t *const distrib, const int32_t i, const int32_t nodeIdx, int32_t left_tries_idx[4], const int32_t depth, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_calc_SLR_helper2(const float64_t *const distrib, const int32_t i, const int32_t nodeIdx, int32_t left_tries_idx[4], const int32_t depth, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_extract_W(float64_t *const *const W, const int32_t K)CTrie< Trie >
POIMs_extract_W(float64_t *const *const W, const int32_t K)CTrie< Trie >
POIMs_extract_W_helper(const int32_t nodeIdx, const int32_t depth, const int32_t offset, const int32_t y0, float64_t *const *const W, const int32_t K)CTrie< Trie >
POIMs_extract_W_helper(const int32_t nodeIdx, const int32_t depth, const int32_t offset, const int32_t y0, float64_t *const *const W, const int32_t K)CTrie< Trie >
POIMs_get_SLR(const int32_t parentIdx, const int32_t sym, const int32_t depth, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_get_SLR(const int32_t parentIdx, const int32_t sym, const int32_t depth, float64_t *S, float64_t *L, float64_t *R)CTrie< Trie >
POIMs_precalc_SLR(const float64_t *const distrib)CTrie< Trie >
POIMs_precalc_SLR(const float64_t *const distrib)CTrie< Trie >
position_weightsCTrie< Trie >protected
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
save_serializable(CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter())CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set_degree(int32_t d)CTrie< Trie >
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_position_weights(float64_t *p_position_weights)CTrie< Trie >
set_use_compact_terminal_nodes(bool p_use_compact_terminal_nodes)CTrie< Trie >
set_weights_in_tree(bool weights_in_tree_)CTrie< Trie >
shallow_copy() const CSGObjectvirtual
traverse(int32_t tree, const int32_t p, struct TreeParseInfo info, const int32_t depth, int32_t *const x, const int32_t k)CTrie< Trie >
TreeMemCTrie< Trie >protected
TreeMemPtrCTrie< Trie >protected
TreeMemPtrMaxCTrie< Trie >protected
treesCTrie< Trie >protected
unset_generic()CSGObject
update_parameter_hash()CSGObjectvirtual
use_compact_terminal_nodesCTrie< Trie >protected
versionCSGObject
weights_in_treeCTrie< Trie >protected
~CSGObject()CSGObjectvirtual
~CTrie()CTrie< Trie >virtual

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