add_example_to_single_tree(int32_t idx, float64_t weight, int32_t tree_num) | CWeightedDegreePositionStringKernel | protected |
add_example_to_tree(int32_t idx, float64_t weight) | CWeightedDegreePositionStringKernel | protectedvirtual |
add_to_normal(int32_t idx, float64_t weight) | CWeightedDegreePositionStringKernel | virtual |
alphabet | CWeightedDegreePositionStringKernel | protected |
block_computation | CWeightedDegreePositionStringKernel | protected |
block_weights | CWeightedDegreePositionStringKernel | protected |
build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict) | CSGObject | |
cache_kernel_row(int32_t x) | CKernel | |
cache_multiple_kernel_rows(int32_t *key, int32_t varnum) | CKernel | |
cache_reset() | CKernel | |
cache_size | CKernel | protected |
CKernel() | CKernel | |
CKernel(int32_t size) | CKernel | |
CKernel(CFeatures *l, CFeatures *r, int32_t size) | CKernel | |
cleanup() | CWeightedDegreePositionStringKernel | virtual |
cleanup_POIM2() | CWeightedDegreePositionStringKernel | |
clear_normal() | CWeightedDegreePositionStringKernel | virtual |
clone() | CSGObject | virtual |
combined_kernel_weight | CKernel | protected |
compute(int32_t idx_a, int32_t idx_b) | CWeightedDegreePositionStringKernel | protectedvirtual |
compute_abs_weights(int32_t &len) | CWeightedDegreePositionStringKernel | |
compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0) | CWeightedDegreePositionStringKernel | virtual |
compute_batch_helper(void *p) | CWeightedDegreePositionStringKernel | static |
compute_by_subkernel(int32_t idx, float64_t *subkernel_contrib) | CWeightedDegreePositionStringKernel | virtual |
compute_by_tree(int32_t idx) | CWeightedDegreePositionStringKernel | virtual |
compute_by_tree(int32_t idx, float64_t *LevelContrib) | CWeightedDegreePositionStringKernel | virtual |
compute_consensus(int32_t &num_feat, int32_t num_suppvec, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | |
compute_optimized(int32_t idx) | CWeightedDegreePositionStringKernel | virtual |
compute_POIM(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *poim_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t *distrib) | CWeightedDegreePositionStringKernel | |
compute_POIM2(int32_t max_degree, CSVM *svm) | CWeightedDegreePositionStringKernel | |
compute_row_start(int64_t offs, int32_t n, bool symmetric) | CKernel | protected |
compute_scoring(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *weights) | CWeightedDegreePositionStringKernel | |
compute_with_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
compute_without_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
compute_without_mismatch_matrix(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
compute_without_mismatch_position_weights(char *avec, float64_t *posweights_lhs, int32_t alen, char *bvec, float64_t *posweights_rhs, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
create_empty_tries() | CWeightedDegreePositionStringKernel | protected |
CSGObject() | CSGObject | |
CSGObject(const CSGObject &orig) | CSGObject | |
CStringKernel(int32_t cachesize=0) | CStringKernel< char > | |
CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< char > | |
CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | |
CWeightedDegreePositionStringKernel(int32_t size, int32_t degree, int32_t max_mismatch=0, int32_t mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
CWeightedDegreePositionStringKernel(int32_t size, SGVector< float64_t > weights, int32_t degree, int32_t max_mismatch, SGVector< int32_t > shifts, int32_t mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
CWeightedDegreePositionStringKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t degree) | CWeightedDegreePositionStringKernel | |
deep_copy() const | CSGObject | virtual |
degree | CWeightedDegreePositionStringKernel | protected |
delete_optimization() | CWeightedDegreePositionStringKernel | virtual |
delete_position_weights() | CWeightedDegreePositionStringKernel | |
delete_position_weights_lhs() | CWeightedDegreePositionStringKernel | |
delete_position_weights_rhs() | CWeightedDegreePositionStringKernel | |
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false) | CSGObject | virtual |
extract_w(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *w_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | |
get(const Tag< T > &_tag) const | CSGObject | |
get(const std::string &name) const | CSGObject | |
get_activenum_cache() | CKernel | |
get_cache_size() | CKernel | |
get_combined_kernel_weight() | CKernel | |
get_degree() | CWeightedDegreePositionStringKernel | |
get_degree_weights(int32_t &d, int32_t &len) | CWeightedDegreePositionStringKernel | |
get_feature_class() | CStringKernel< char > | virtual |
get_feature_type() | CStringKernel< char > | virtual |
get_global_io() | CSGObject | |
get_global_parallel() | CSGObject | |
get_global_version() | CSGObject | |
get_is_initialized() | CKernel | |
get_kernel_col(int32_t j) | CKernel | virtual |
get_kernel_diagonal(SGVector< float64_t > preallocated=SGVector< float64_t >()) | CKernel | |
get_kernel_matrix() | CKernel | |
get_kernel_matrix() | CKernel | |
get_kernel_matrix_helper(void *p) | CKernel | protectedstatic |
get_kernel_row(int32_t i) | CKernel | virtual |
get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false) | CKernel | |
get_kernel_type() | CWeightedDegreePositionStringKernel | virtual |
get_lhs() | CKernel | |
get_lhs_equals_rhs() | CKernel | |
get_max_elems_cache() | CKernel | |
get_max_mismatch() | CWeightedDegreePositionStringKernel | |
get_modelsel_names() | CSGObject | |
get_modsel_param_descr(const char *param_name) | CSGObject | |
get_modsel_param_index(const char *param_name) | CSGObject | |
get_name() const | CWeightedDegreePositionStringKernel | virtual |
get_normalizer() | CKernel | virtual |
get_num_subkernels() | CWeightedDegreePositionStringKernel | virtual |
get_num_vec_lhs() | CKernel | virtual |
get_num_vec_rhs() | CKernel | virtual |
get_optimization_type() | CKernel | |
get_parameter_gradient(const TParameter *param, index_t index=-1) | CKernel | virtual |
get_parameter_gradient_diagonal(const TParameter *param, index_t index=-1) | CKernel | virtual |
get_POIM2() | CWeightedDegreePositionStringKernel | |
get_position_weights(int32_t &len) | CWeightedDegreePositionStringKernel | |
get_rhs() | CKernel | |
get_subkernel_weights(int32_t &num_weights) | CWeightedDegreePositionStringKernel | virtual |
CStringKernel< char >::get_subkernel_weights() | CKernel | virtual |
get_weights(int32_t &num_weights) | CWeightedDegreePositionStringKernel | |
has(const std::string &name) const | CSGObject | |
has(const Tag< T > &tag) const | CSGObject | |
has(const std::string &name) const | CSGObject | |
has_features() | CKernel | virtual |
has_property(EKernelProperty p) | CKernel | |
init(CFeatures *l, CFeatures *r) | CWeightedDegreePositionStringKernel | virtual |
init_block_weights() | CWeightedDegreePositionStringKernel | |
init_block_weights_const() | CWeightedDegreePositionStringKernel | |
init_block_weights_cubicpoly() | CWeightedDegreePositionStringKernel | |
init_block_weights_exp() | CWeightedDegreePositionStringKernel | |
init_block_weights_from_wd() | CWeightedDegreePositionStringKernel | |
init_block_weights_from_wd_external() | CWeightedDegreePositionStringKernel | |
init_block_weights_linear() | CWeightedDegreePositionStringKernel | |
init_block_weights_log() | CWeightedDegreePositionStringKernel | |
init_block_weights_sqpoly() | CWeightedDegreePositionStringKernel | |
init_normalizer() | CKernel | virtual |
init_optimization(int32_t p_count, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | virtual |
init_optimization(int32_t count, int32_t *IDX, float64_t *alphas, int32_t tree_num, int32_t upto_tree=-1) | CWeightedDegreePositionStringKernel | virtual |
init_optimization_svm(CSVM *svm) | CKernel | |
io | CSGObject | |
is_generic(EPrimitiveType *generic) const | CSGObject | virtual |
is_tree_initialized() | CWeightedDegreePositionStringKernel | |
kernel(int32_t idx_a, int32_t idx_b) | CKernel | |
kernel_cache | CKernel | protected |
kernel_cache_check(int32_t cacheidx) | CKernel | |
kernel_cache_cleanup() | CKernel | |
kernel_cache_init(int32_t size, bool regression_hack=false) | CKernel | |
kernel_cache_reset_lru() | CKernel | |
kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after) | CKernel | |
kernel_cache_space_available() | CKernel | |
kernel_cache_touch(int32_t cacheidx) | CKernel | |
kernel_matrix | CKernel | protected |
length | CWeightedDegreePositionStringKernel | protected |
lhs | CKernel | protected |
lhs_equals_rhs | CKernel | protected |
list_kernel() | CKernel | |
load(CFile *loader) | CKernel | |
load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
load_serializable_post() | CWeightedDegreePositionStringKernel | protectedvirtual |
load_serializable_pre() | CSGObject | protectedvirtual |
m_gradient_parameters | CSGObject | |
m_hash | CSGObject | |
m_model_selection_parameters | CSGObject | |
m_parameters | CSGObject | |
m_poim | CWeightedDegreePositionStringKernel | protected |
m_poim_distrib | CWeightedDegreePositionStringKernel | protected |
m_poim_num_feat | CWeightedDegreePositionStringKernel | protected |
m_poim_num_sym | CWeightedDegreePositionStringKernel | protected |
m_poim_result_len | CWeightedDegreePositionStringKernel | protected |
max_mismatch | CWeightedDegreePositionStringKernel | protected |
max_shift | CWeightedDegreePositionStringKernel | protected |
mkl_stepsize | CWeightedDegreePositionStringKernel | protected |
normalizer | CKernel | protected |
num_lhs | CKernel | protected |
num_rhs | CKernel | protected |
obtain_from_generic(CSGObject *kernel) | CKernel | static |
opt_type | CKernel | protected |
optimization_initialized | CKernel | protected |
parallel | CSGObject | |
parameter_hash_changed() | CSGObject | virtual |
poim_tries | CWeightedDegreePositionStringKernel | protected |
position_mask | CWeightedDegreePositionStringKernel | protected |
position_weights | CWeightedDegreePositionStringKernel | protected |
position_weights_len | CWeightedDegreePositionStringKernel | protected |
position_weights_lhs | CWeightedDegreePositionStringKernel | protected |
position_weights_lhs_len | CWeightedDegreePositionStringKernel | protected |
position_weights_rhs | CWeightedDegreePositionStringKernel | protected |
position_weights_rhs_len | CWeightedDegreePositionStringKernel | protected |
prepare_POIM2(SGMatrix< float64_t > distrib) | CWeightedDegreePositionStringKernel | |
print_modsel_params() | CSGObject | |
print_serializable(const char *prefix="") | CSGObject | virtual |
properties | CKernel | protected |
register_param(Tag< T > &_tag, const T &value) | CSGObject | protected |
register_param(const std::string &name, const T &value) | CSGObject | protected |
register_params() | CKernel | protectedvirtual |
remove_lhs() | CWeightedDegreePositionStringKernel | protectedvirtual |
remove_lhs_and_rhs() | CKernel | virtual |
remove_rhs() | CKernel | virtual |
resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false) | CKernel | |
rhs | CKernel | protected |
row_col_wise_sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false) | CKernel | virtual |
row_wise_sum_squared_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
row_wise_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
save(CFile *writer) | CKernel | |
save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
save_serializable_post() | CKernel | protectedvirtual |
save_serializable_pre() | CKernel | protectedvirtual |
seq_length | CWeightedDegreePositionStringKernel | protected |
set(const Tag< T > &_tag, const T &value) | CSGObject | |
set(const std::string &name, const T &value) | CSGObject | |
set_cache_size(int32_t size) | CKernel | |
set_combined_kernel_weight(float64_t nw) | CKernel | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_generic() | CSGObject | |
set_global_io(SGIO *io) | CSGObject | |
set_global_parallel(Parallel *parallel) | CSGObject | |
set_global_version(Version *version) | CSGObject | |
set_is_initialized(bool p_init) | CKernel | protected |
set_normalizer(CKernelNormalizer *normalizer) | CKernel | virtual |
set_optimization_type(EOptimizationType t) | CKernel | virtual |
set_position_weights(SGVector< float64_t > pws) | CWeightedDegreePositionStringKernel | virtual |
set_position_weights_lhs(float64_t *pws, int32_t len, int32_t num) | CWeightedDegreePositionStringKernel | |
set_position_weights_rhs(float64_t *pws, int32_t len, int32_t num) | CWeightedDegreePositionStringKernel | |
set_property(EKernelProperty p) | CKernel | protected |
set_shifts(SGVector< int32_t > shifts) | CWeightedDegreePositionStringKernel | |
set_subkernel_weights(SGVector< float64_t > w) | CWeightedDegreePositionStringKernel | virtual |
set_time(int32_t t) | CKernel | |
set_wd_weights() | CWeightedDegreePositionStringKernel | virtual |
set_weights(SGMatrix< float64_t > new_weights) | CWeightedDegreePositionStringKernel | |
shallow_copy() const | CSGObject | virtual |
shift | CWeightedDegreePositionStringKernel | protected |
shift_len | CWeightedDegreePositionStringKernel | protected |
sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false) | CKernel | virtual |
sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
tree_initialized | CWeightedDegreePositionStringKernel | protected |
tries | CWeightedDegreePositionStringKernel | protected |
type | CWeightedDegreePositionStringKernel | protected |
unset_generic() | CSGObject | |
unset_property(EKernelProperty p) | CKernel | protected |
update_parameter_hash() | CSGObject | virtual |
use_poim_tries | CWeightedDegreePositionStringKernel | protected |
version | CSGObject | |
weights | CWeightedDegreePositionStringKernel | protected |
weights_buffer | CWeightedDegreePositionStringKernel | protected |
weights_degree | CWeightedDegreePositionStringKernel | protected |
weights_length | CWeightedDegreePositionStringKernel | protected |
which_degree | CWeightedDegreePositionStringKernel | protected |
~CKernel() | CKernel | virtual |
~CSGObject() | CSGObject | virtual |
~CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | virtual |