config.h

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#ifndef __SHOGUN_LIB_CONFIG_H__
#define __SHOGUN_LIB_CONFIG_H__

#define MACHINE "x86_64"
#define CONFIGURE_OPTIONS "TODO"
#define COMPFLAGS_CPP "-std=c++11 -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated   -fopenmp  -O3 -fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse"
#define LINKFLAGS "-lpthread;/usr/lib/liblapack.so;/usr/lib/libf77blas.so.3gf;/usr/lib/libatlas.so.3gf;/usr/lib/libcblas.so.3;/usr/lib/x86_64-linux-gnu/libglpk.so;/usr/lib/libparpack.so;/usr/lib/x86_64-linux-gnu/libnlopt.so;/usr/lib/liblpsolve55.a;/usr/local/lib/libColPack.so;-ljson-c;/usr/lib/x86_64-linux-gnu/libxml2.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libbz2.so;/usr/lib/x86_64-linux-gnu/liblzma.so;/usr/lib/libsnappy.so;/usr/lib/x86_64-linux-gnu/liblzo2.so"

#define SFMT_MEXP 19937
#define DSFMT_MEXP 19937

#define HAVE_HDF5 1
#define HAVE_CURL 1
#define HAVE_JSON 1
#define HAVE_XML 1
#define HAVE_LARGEFILE 1
#define HAVE_DOXYGEN 1
#define HAVE_LAPACK 1
/* #undef HAVE_MVEC */
/* #undef HAVE_PROTOBUF */

#define HAVE_ARPACK 1
/* #undef HAVE_VIENNACL */
/* #undef VIENNACL_VERSION */
/* #undef HAVE_OPENCV */
/* #undef HAVE_CATLAS */
/* #undef HAVE_ATLAS */
/* #undef HAVE_MKL */
#define HAVE_NLOPT 1
#define USE_LPSOLVE 1
#define HAVE_PTHREAD 1
#define HAVE_OPENMP 1
/* #undef USE_CPLEX */
#define HAVE_COLPACK 1
/* #undef HAVE_ARPREC */

#define HAVE_POWL 1
#define HAVE_LGAMMAL 1
#define HAVE_SQRTL 1
#define HAVE_LOG2 1
/* #undef USE_LOGCACHE */
/* #undef USE_LOGSUMARRAY */

/* Tells ViennaCL to use OpenCL as computation backend */
#define VIENNACL_WITH_OPENCL 1

/* for linear algebra global backend setups */
#define HAVE_LINALG_LIB 1

#define USE_EIGEN3 1
/* #undef USE_VIENNACL */

#define USE_EIGEN3_CORE 1
/* #undef USE_VIENNACL_CORE */

#define USE_EIGEN3_REDUX 1
/* #undef USE_VIENNACL_REDUX */

/* #undef USE_EIGEN3_LINSLV */
/* #undef USE_VIENNACL_LINSLV */

#define USE_EIGEN3_EIGSLV 1
/* #undef USE_VIENNACL_EIGSLV */

/* Define to 1 if you have the declaration of `isfinite', and to 0 if you
   don't. */
/* #undef HAVE_DECL_ISFINITE */

/* Define to 1 if you have the declaration of `isinf', and to 0 if you don't. */
#define HAVE_DECL_ISINF 1

/* Define to 1 if you have the declaration of `isnan', and to 0 if you don't. */
#define HAVE_DECL_ISNAN 1

/* Define to 1 if you have the `finite' function. */
/* #undef HAVE_FINITE */

/* Define to 1 if you have the `fpclass' function. */
#define HAVE_FPCLASS 1

/* Define to 1 if you have the `isfinite' function. */
/* #undef HAVE_ISFINITE */

/* Define to 1 if you have the `isinf' function. */
#define HAVE_ISINF 1

/* Define to 1 if you have the `isnan' function. */
#define HAVE_ISNAN 1

/* Define to 1 if you have the `std::isfinite' function. */
#define HAVE_STD_ISFINITE 1

/* Define to 1 if you have the `std::isinf' function. */
#define HAVE_STD_ISINF 1

/* Define to 1 if you have the `std::isnan' function. */
#define HAVE_STD_ISNAN 1

#define HAVE_DECL_SIGNGAM 1

#define HAVE_FDOPEN 1

#define USE_SPINLOCKS 1
#define USE_SHORTREAL_KERNELCACHE 1
#define USE_BIGSTATES 1

/* #undef USE_HMMDEBUG */
#define USE_HMMCACHE 1
/* #undef USE_HMMPARALLEL */
/* #undef USE_HMMPARALLEL_STRUCTURES */

/* #undef USE_PATHDEBUG */

#define USE_SVMLIGHT 1
/* #undef USE_MOSEK */
#define USE_GPL_SHOGUN 1

#define USE_GLPK 1
#define USE_LZO 1
#define USE_GZIP 1
#define USE_BZIP2 1
#define USE_LZMA 1
#define USE_REFERENCE_COUNTING 1
#define USE_SNAPPY 1

#define HAVE_SSE2 1
#define HAVE_BUILTIN_VECTOR 1
/* #undef OCTAVE_APIVERSION */

/* #undef DARWIN */
/* #undef FREEBSD */
#define LINUX 1

/* #undef USE_SWIG_DIRECTORS */
/* #undef TRACE_MEMORY_ALLOCS */
/* #undef USE_JEMALLOC */

/* #undef NARRAY_LIB */

/* #undef HAVE_CXX0X */
#define HAVE_CXX11 1
#define HAVE_CXX11_ATOMIC 1
#define HAVE_STD_UNORDERED_MAP 1

/* random related defines */
/* #undef HAVE_ARC4RANDOM */
#define DEV_RANDOM "/dev/urandom"

#endif /* __SHOGUN_LIB_CONFIG_H__ */