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config.h
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1 #ifndef __SHOGUN_LIB_CONFIG_H__
2 #define __SHOGUN_LIB_CONFIG_H__
3 
4 #define MACHINE "x86_64"
5 #define CONFIGURE_OPTIONS "TODO"
6 #define COMPFLAGS_CPP "-std=c++11 -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated -fopenmp -O3 -fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse"
7 #define LINKFLAGS "-lpthread;/usr/lib/liblapack.so;/usr/lib/libf77blas.so.3gf;/usr/lib/libatlas.so.3gf;/usr/lib/libcblas.so.3;/usr/lib/x86_64-linux-gnu/libglpk.so;/usr/lib/libparpack.so;/usr/lib/x86_64-linux-gnu/libnlopt.so;/usr/lib/liblpsolve55.a;/usr/local/lib/libColPack.so;-ljson-c;/usr/lib/x86_64-linux-gnu/libxml2.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libbz2.so;/usr/lib/x86_64-linux-gnu/liblzma.so;/usr/lib/libsnappy.so;/usr/lib/x86_64-linux-gnu/liblzo2.so"
8 
9 #define SFMT_MEXP 19937
10 #define DSFMT_MEXP 19937
11 
12 #define HAVE_HDF5 1
13 #define HAVE_CURL 1
14 #define HAVE_JSON 1
15 #define HAVE_XML 1
16 #define HAVE_LARGEFILE 1
17 #define HAVE_DOXYGEN 1
18 #define HAVE_LAPACK 1
19 /* #undef HAVE_MVEC */
20 /* #undef HAVE_PROTOBUF */
21 
22 #define HAVE_ARPACK 1
23 /* #undef HAVE_VIENNACL */
24 /* #undef VIENNACL_VERSION */
25 /* #undef HAVE_OPENCV */
26 /* #undef HAVE_CATLAS */
27 /* #undef HAVE_ATLAS */
28 /* #undef HAVE_MKL */
29 #define HAVE_NLOPT 1
30 #define USE_LPSOLVE 1
31 #define HAVE_PTHREAD 1
32 /* #undef USE_CPLEX */
33 #define HAVE_COLPACK 1
34 /* #undef HAVE_ARPREC */
35 
36 #define HAVE_POWL 1
37 #define HAVE_LGAMMAL 1
38 #define HAVE_SQRTL 1
39 #define HAVE_LOG2 1
40 /* #undef USE_LOGCACHE */
41 /* #undef USE_LOGSUMARRAY */
42 
43 /* Tells ViennaCL to use OpenCL as computation backend */
44 #define VIENNACL_WITH_OPENCL 1
45 
46 /* for linear algebra global backend setups */
47 #define HAVE_LINALG_LIB 1
48 
49 #define USE_EIGEN3 1
50 /* #undef USE_VIENNACL */
51 
52 #define USE_EIGEN3_CORE 1
53 /* #undef USE_VIENNACL_CORE */
54 
55 #define USE_EIGEN3_REDUX 1
56 /* #undef USE_VIENNACL_REDUX */
57 
58 /* #undef USE_EIGEN3_LINSLV */
59 /* #undef USE_VIENNACL_LINSLV */
60 
61 #define USE_EIGEN3_EIGSLV 1
62 /* #undef USE_VIENNACL_EIGSLV */
63 
64 /* Define to 1 if you have the declaration of `isfinite', and to 0 if you
65  don't. */
66 /* #undef HAVE_DECL_ISFINITE */
67 
68 /* Define to 1 if you have the declaration of `isinf', and to 0 if you don't. */
69 #define HAVE_DECL_ISINF 1
70 
71 /* Define to 1 if you have the declaration of `isnan', and to 0 if you don't. */
72 #define HAVE_DECL_ISNAN 1
73 
74 /* Define to 1 if you have the `finite' function. */
75 /* #undef HAVE_FINITE */
76 
77 /* Define to 1 if you have the `fpclass' function. */
78 #define HAVE_FPCLASS 1
79 
80 /* Define to 1 if you have the `isfinite' function. */
81 /* #undef HAVE_ISFINITE */
82 
83 /* Define to 1 if you have the `isinf' function. */
84 #define HAVE_ISINF 1
85 
86 /* Define to 1 if you have the `isnan' function. */
87 #define HAVE_ISNAN 1
88 
89 /* Define to 1 if you have the `std::isfinite' function. */
90 #define HAVE_STD_ISFINITE 1
91 
92 /* Define to 1 if you have the `std::isinf' function. */
93 #define HAVE_STD_ISINF 1
94 
95 /* Define to 1 if you have the `std::isnan' function. */
96 #define HAVE_STD_ISNAN 1
97 
98 #define HAVE_DECL_SIGNGAM 1
99 
100 #define HAVE_FDOPEN 1
101 
102 #define USE_SPINLOCKS 1
103 #define USE_SHORTREAL_KERNELCACHE 1
104 #define USE_BIGSTATES 1
105 
106 /* #undef USE_HMMDEBUG */
107 #define USE_HMMCACHE 1
108 /* #undef USE_HMMPARALLEL */
109 /* #undef USE_HMMPARALLEL_STRUCTURES */
110 
111 /* #undef USE_PATHDEBUG */
112 
113 #define USE_SVMLIGHT 1
114 /* #undef USE_MOSEK */
115 #define USE_GPL_SHOGUN 1
116 
117 #define USE_GLPK 1
118 #define USE_LZO 1
119 #define USE_GZIP 1
120 #define USE_BZIP2 1
121 #define USE_LZMA 1
122 #define USE_REFERENCE_COUNTING 1
123 #define USE_SNAPPY 1
124 
125 #define HAVE_SSE2 1
126 #define HAVE_BUILTIN_VECTOR 1
127 /* #undef OCTAVE_APIVERSION */
128 
129 /* #undef DARWIN */
130 /* #undef FREEBSD */
131 #define LINUX 1
132 
133 /* #undef USE_SWIG_DIRECTORS */
134 /* #undef TRACE_MEMORY_ALLOCS */
135 /* #undef USE_JEMALLOC */
136 
137 /* #undef NARRAY_LIB */
138 
139 /* #undef HAVE_CXX0X */
140 #define HAVE_CXX11 1
141 #define HAVE_CXX11_ATOMIC 1
142 #define HAVE_STD_UNORDERED_MAP 1
143 
144 /* random related defines */
145 /* #undef HAVE_ARC4RANDOM */
146 #define DEV_RANDOM "/dev/urandom"
147 
148 #endif /* __SHOGUN_LIB_CONFIG_H__ */

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