| --- Log opened Fri Mar 25 00:00:36 2011 | ||
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| * fredt Hello World | 02:15 | |
| * fredt Great and bye =) | 02:25 | |
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| seviyor | #topic | 11:32 |
|---|---|---|
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| sonney2k | yoh, around? | 17:18 |
| yoh | now - yes | 17:20 |
| yoh | sonney2k: above ;) | 17:20 |
| yoh | but my screen with IRC is burried deep - so do not get surprised if I do not respond immediately | 17:21 |
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| sonney2k | yoh, *sigh* my machine froze - in case you answered please pong again | 17:33 |
| yoh | sonney2k: answered to what? that I am here? yes I am ;) | 18:58 |
| sonney2k | yes | 18:59 |
| sonney2k | I am trying to do the git conversion https://github.com/shogun-toolbox | 19:00 |
| sonney2k | I've split out data and source code to actually not waste to much hard disk space /bandwith | 19:00 |
| sonney2k | yoh, would be great if you could check it out and give comments | 19:01 |
| sonney2k | (I will now have to fix all the many scripts / makefile etc to work with git) | 19:01 |
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| yoh | ok -- will check it in 30mins, ok? | 19:43 |
| yoh | for some reason github became slow on my in the last few days | 20:24 |
| yoh | I saw their recent blog only on 'improved' performance. | 20:25 |
| yoh | initial throughput is high but then it drops considerably :-/ | 20:27 |
| -!- Tanmoy [75d35896@gateway/web/freenode/ip.117.211.88.150] has joined #shogun | 20:37 | |
| yoh | btw -- not sure if that would matter if pushed back to github: if I repack local clone -- size of .git goes from 200MB to 118MB | 20:41 |
| yoh | have you repacked it before pushing to github? | 20:41 |
| -!- sonney2k [~sonney2k@89.204.137.99] has joined #shogun | 20:44 | |
| yoh | what is that really dangling tag for genefinder_0_1_0? | 20:45 |
| sonney2k | yoh, the mighty roots of shogun | 20:45 |
| sonney2k | we started out to write yet another genefinder | 20:46 |
| yoh | but it seems to be without a tree ;) (no files etc) -- why to keep it? | 20:46 |
| sonney2k | but for some reason we are taking looong shortcuts :) | 20:46 |
| sonney2k | yoh, it has files here!? | 20:48 |
| yoh | 1 sec | 20:50 |
| sonney2k | however I don't really know how to access the tag... | 20:50 |
| yoh | ah sorry -- yes | 20:51 |
| yoh | files are there | 20:51 |
| yoh | the same way -- you can check it out | 20:51 |
| sonney2k | beyond my git skills | 20:51 |
| yoh | I just got confused in gitk a bit ;) | 20:51 |
| sonney2k | well git checkout <tag> makes me git tell me that I am in detached head state | 20:51 |
| yoh | you might have rewritten that commit though with some useful message ;) | 20:51 |
| yoh | yes- - because tag is not a branch | 20:52 |
| yoh | if you like to get it into branch, just do "git checkout -b branch-for-tagX tagX" | 20:52 |
| sonney2k | then it is a local branch right? | 20:52 |
| sonney2k | yoh, ahh how do I get rid of untracked files? | 20:55 |
| * sonney2k *sigh* once again /me is a newbie | 20:56 | |
| sonney2k | cool stuff https://github.com/shogun-toolbox/shogun/graphs/impact | 20:56 |
| yoh | sonney2k: you mean in the local checkout? | 20:56 |
| sonney2k | yoh, yes | 20:56 |
| yoh | most oopportunistic 'git clean -dfx' | 20:56 |
| yoh | and I would recommend to have data not as a symlink but as a git submodule | 20:57 |
| sonney2k | yoh, did you find anything suspicious otherwise? | 20:57 |
| sonney2k | how to do that? | 20:57 |
| yoh | it does take a bit to get used to but it is the correct way to bind tw o repositories together e.g. so you could assure specific revision of data for specific release of shogun | 20:57 |
| yoh | git rm data | 20:58 |
| yoh | mkdir data | 20:58 |
| yoh | actually let me just do it and then give you a list of commands ;) | 20:58 |
| sonney2k | k | 20:58 |
| yoh | damn... need to leave atm (help doing MRI scanning)... will do later today | 20:59 |
| sonney2k | yoh, enjoy | 20:59 |
| sonney2k | l8r | 20:59 |
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| yoh | btw -- wanna see big tree of your git: *** "mod:pickle/cPickle modules" doesn't render nicely ;) | 21:11 |
| yoh | oops -- wrong paste | 21:11 |
| yoh | http://www.onerussian.com/tmp/big.pdf | 21:11 |
| yoh | sonney2k: eh -- you are offline again so no reason for me to type on instructions with gitsubmodules -- will send you an email with the log | 21:14 |
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| sonney2k | yoh, I was riding the train back home again and had to switch to a bike... | 21:26 |
| sonney2k | (it is still hard for me to stay online while biking ;) | 21:26 |
| yoh | I would recommend running some console base IRC client (e.g. irssi) in a screen on some always-online box, so you could always be omnipresent and get all the messages pepople write to you while you are physically offline | 21:38 |
| sonney2k | yoh, that is what shogun-toolbox is... | 21:39 |
| sonney2k | yoh, I did the submodule thing | 21:39 |
| sonney2k | not sure if I like it that much though | 21:39 |
| sonney2k | it forces people to get the data submodule | 21:40 |
| sonney2k | whcih is pretty big compared to the src | 21:40 |
| yoh | no -- if they just clone shogun repo -- nobody forces them to do submodule update ;) | 21:41 |
| yoh | src is as big atm | 21:41 |
| yoh | wanted to test either pushing repacked repository to github would reduce the size on github .... but will need to go offline soon, so will check later | 21:42 |
| sonney2k | yoh, you mean git gc? | 21:42 |
| yoh | no | 21:43 |
| yoh | git repack | 21:43 |
| yoh | in particular I usually do git repack -a -d -f --window=100 | 21:43 |
| sonney2k | OK running | 21:44 |
| yoh | git gc should not hurt either ;) especially if you removed any unneeded branches | 21:44 |
| sonney2k | however I did that already after svn2git | 21:44 |
| yoh | ah | 21:44 |
| sonney2k | I didn't | 21:44 |
| sonney2k | but hey I am happy that the tags are there just fine | 21:44 |
| sonney2k | and the branches too | 21:44 |
| yoh | ;-) | 21:44 |
| sonney2k | your git repack brings it down 80MB | 21:45 |
| yoh | ok -- need to go now -- TTYL ... play with submodule idea -- you might like it at the end ;) | 21:45 |
| yoh | ;) | 21:45 |
| sonney2k | now 480MB in checkout | 21:45 |
| sonney2k | yoh, it is already commited like this | 21:46 |
| yoh | told ya ... well -- it should not impact checkout. but only size of .git | 21:46 |
| sonney2k | yeah but how do I upload the repacked thing to github? | 21:46 |
| yoh | ;) that is the question... I asked on github irc but no asnwer yet if it would be of effect: remove old one, init it, push a new one | 21:47 |
| yoh | since shasums are the same -- no one should mention anything if they already cloned it ;) | 21:47 |
| yoh | now I am gone | 21:47 |
| sonney2k | l8r | 21:47 |
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| sploving | hello | 23:05 |
| sonney2k | hi... | 23:05 |
| * sonney2k gets sleepy | 23:06 | |
| sploving | where is the svn trunk? I cound not find it. | 23:06 |
| sploving | sorry to boter you | 23:06 |
| sploving | bother | 23:06 |
| sonney2k | sploving, check www.shogun-toolbox.org | 23:06 |
| sonney2k | description is all there | 23:06 |
| sonney2k | alternatively I am in the process of moving things to git https://github.com/shogun-toolbox/shogun | 23:07 |
| sonney2k | so you could use that as well | 23:07 |
| sploving | ok i know. thx | 23:07 |
| Tanmoy | moving to github is pretty cool | 23:08 |
| sonney2k | yeah... much easier for gsoc | 23:09 |
| sonney2k | but it is quite some effort ... | 23:09 |
| sonney2k | anyways, I am too sleepy now... | 23:09 |
| sonney2k | l8r | 23:10 |
| sploving | bye | 23:10 |
| Tanmoy | :) | 23:10 |
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| Tanmoy | off to sleep | 23:55 |
| yoh | sonney2k: btw -- have you considered pruning data files from the history of the repository entirely? | 23:56 |
| yoh | sonney2k: btw -- tested upload of the repacked repository -- cloning became faster and size remained at 118MB -- coolio | 23:58 |
| --- Log closed Sat Mar 26 00:00:25 2011 | ||
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