| --- Log opened Tue Jul 05 00:00:46 2011 | ||
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| CIA-32 | shogun: Shashwat Lal Das master * r8eec45c / (6 files): Implemented overloading in streaming sparse and string files. Removed the get_vector template declaration in them. - http://bit.ly/l2rRpy | 08:38 |
|---|---|---|
| CIA-32 | shogun: Soeren Sonnenburg master * ra5bffe3 / (18 files in 3 dirs): | 08:38 |
| CIA-32 | shogun: Merge pull request #169 from frx/streamingfile | 08:38 |
| CIA-32 | shogun: StreamingFile structure changes, updated for String and SparseFeatures - http://bit.ly/m5yodX | 08:38 |
| CIA-32 | shogun: Soeren Sonnenburg master * r93ea9dd / src/libshogun/preprocessor/ClassicMDS.cpp : Fix compilation error in classic mds. - http://bit.ly/liWWeI | 08:44 |
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| heiko | hi there | 11:19 |
| heiko | anybody here? | 11:19 |
| heiko | I got a lot of linker errors | 11:19 |
| heiko | CStreamingFile | 11:20 |
| @sonney2k | yes here | 11:37 |
| @sonney2k | heiko, did you do a git clean -dfx / make distclean? | 11:39 |
| @sonney2k | I compiled for *all* interfaces w/o trouble... | 11:40 |
| heiko | currently rebuilding :) | 11:40 |
| bettyboo | smart | 11:40 |
| @sonney2k | indeed :) | 11:42 |
| heiko | hehe :) | 11:43 |
| heiko | sonney2k, | 11:43 |
| @sonney2k | yes? | 11:43 |
| heiko | which feature type is most important next to simple/string and sparese | 11:43 |
| heiko | sparse | 11:43 |
| @sonney2k | that's all | 11:43 |
| @sonney2k | we have no more than that | 11:43 |
| heiko | huh but all these that inherit from dotFeatures? | 11:44 |
| @sonney2k | heiko, don't get confused by the streaming/online features - I don't see a way to do model selection with these | 11:44 |
| heiko | What about for example PolyFeatures? | 11:45 |
| @sonney2k | heiko, then I would rather modify dotfeatures directly | 11:45 |
| heiko | but it is abstract | 11:45 |
| heiko | and for example the get_num_vectors method is not implemented in there | 11:45 |
| heiko | I may also just move that method to DotFeatures (if its possible) | 11:46 |
| @sonney2k | heiko, I would say - postpone for now. if things get too complex I would rather modify the subset selection (i.e. one should then manually specify feature objects for training / validation / test) | 11:48 |
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| blackburn | sonney2k: thanks for fixing it, strange - was working | 12:17 |
| @sonney2k | blackburn, weird it is a &int vs int - shouldn't work - anyways | 12:30 |
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| blackburn | okay | 12:30 |
| @sonney2k | heiko? | 12:30 |
| @sonney2k | argh | 12:30 |
| @sonney2k | just wanted to say sth | 12:30 |
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| blackburn | sonney2k: heiko | 13:55 |
| blackburn | :) | 13:55 |
| bettyboo | :Q | 13:56 |
| heiko | hey | 13:57 |
| heiko | what? | 13:57 |
| heiko | Could anyone of you help me a little with setting up python_modular for my new classes - i.e. the modelselection folder? | 13:58 |
| blackburn | heiko: soeren wanted to say sth to you | 13:58 |
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| heiko | ok | 13:58 |
| blackburn | heiko: how can I help you? | 13:59 |
| heiko | did not read anything here | 13:59 |
| heiko | blackburn: I want to create some python examples for my modsel stuff | 13:59 |
| blackburn | yes | 13:59 |
| heiko | and I am not sure how this is done | 13:59 |
| heiko | I need a new Modelselection.i file right? | 13:59 |
| blackburn | yeap | 13:59 |
| blackburn | and Modelselection_includes.i | 14:00 |
| blackburn | in modelselection_includes.i just write | 14:01 |
| blackburn | %{ | 14:01 |
| blackburn | #include <shogun/modelselection/blablabla.h> | 14:01 |
| blackburn | ... | 14:01 |
| blackburn | %} | 14:01 |
| blackburn | in modelselection.i just do as it done in e.g. preprocessor.i | 14:01 |
| heiko | ok | 14:01 |
| heiko | will try | 14:01 |
| heiko | and then? | 14:01 |
| heiko | everything ready? | 14:01 |
| blackburn | then just compile it with python_modular | 14:01 |
| blackburn | yes | 14:01 |
| heiko | ok | 14:02 |
| heiko | cool | 14:02 |
| heiko | thanks | 14:02 |
| blackburn | yes pretty cool thing | 14:02 |
| blackburn | just make a short test | 14:02 |
| blackburn | from shogun.Modelselection import [something] | 14:02 |
| blackburn | if it will pass - you could improve it a little :) | 14:02 |
| heiko | yes ok :) | 14:03 |
| * blackburn should stop using if + future tense | 14:03 | |
| heiko | ehm :D | 14:03 |
| heiko | yes, but I understood anyways | 14:03 |
| blackburn | it is because you are non-native too :D | 14:03 |
| blackburn | heiko: btw is it the same in german? (I don't know any german grammar except the name of Partizip Zwei) | 14:08 |
| blackburn | I mean is it 'future' in conditionals? | 14:08 |
| heiko | I think not | 14:09 |
| heiko | but I am not the language specialist .) | 14:09 |
| heiko | not sure, but I think its not possible | 14:10 |
| blackburn | I see | 14:16 |
| blackburn | in russian, it is a typical construction: sth like "if I will blablabla" | 14:17 |
| blackburn | so I make mistakes automatically hehe | 14:17 |
| bettyboo | :) blackburn | 14:17 |
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| heiko | blackburn, how is the _wrap.cxx file created? | 14:35 |
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| sploving1 | hi sonney2k | 14:56 |
| sploving1 | coud not apply org.shogun.BaseKernel save(org.shogun.SWIGTYPE_p_shogun__CFile) to (org.shogun.AsciiFile) | 14:57 |
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| @sonney2k | heiko, I was thinking about the DotFeatures stuff | 15:45 |
| @sonney2k | you actually can call get_num_vectors() | 15:45 |
| @sonney2k | so you could do the subsetting if you want | 15:46 |
| @sonney2k | and then you 'only' need to change the various add_to_dense_vec etc functions | 15:46 |
| heiko | yes | 15:46 |
| @sonney2k | this would add support for all kinds of features like simple/sparse immediately | 15:46 |
| @sonney2k | however, simple/sparse have some overloaded get_vector functions IIRC | 15:47 |
| @sonney2k | so these still need to be changed | 15:47 |
| @sonney2k | so much about this | 15:47 |
| @sonney2k | btw, dynarray is sth I wrote... I think gunnar confuses this with CArray - but could very well be that he did the copy constructor or D.L. did :) | 15:48 |
| heiko | so just implement rhis method in DotFeatures | 15:48 |
| heiko | ok :) | 15:48 |
| @sonney2k | blackburn, thanks for explaining the swig things to heiko | 15:48 |
| @sonney2k | heiko, but continue the swig thing while you are on it :) | 15:49 |
| heiko | sonney2k, did you read my mail about the DynArray<ParameterCombination> from python? | 15:49 |
| heiko | ok, will do :) | 15:49 |
| heiko | Ah sorry, I have to go now, give a math lesson. will be back in an hour | 15:51 |
| heiko | see you | 15:51 |
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| @sonney2k | blackburn, do you have any idea what sploving wanted to say above? | 16:03 |
| @sonney2k | seems he is gone already... | 16:03 |
| CIA-32 | shogun: Baozeng Ding master * rfe784a5 / (8 files): add some kernel exmaples for java_modular - http://bit.ly/jYjov5 | 16:04 |
| CIA-32 | shogun: Soeren Sonnenburg master * r41a8c99 / (8 files): | 16:04 |
| CIA-32 | shogun: Merge pull request #170 from sploving/master | 16:04 |
| CIA-32 | shogun: add some kernel example for java_modular - http://bit.ly/kIADfX | 16:04 |
| blackburn | sonney2k: sorry fell asleep :D | 16:12 |
| @sonney2k | blackburn, office sleep - nice :) | 16:15 |
| blackburn | sonney2k: what about sploving? can't see any msgs from him | 16:15 |
| @sonney2k | <sploving1> hi sonney2k | 16:15 |
| @sonney2k | <sploving1> coud not apply org.shogun.BaseKernel save(org.shogun.SWIGTYPE_p_shogun__CFile) to (org.shogun.AsciiFile) | 16:15 |
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| blackburn | ah | 16:16 |
| @sonney2k | sploving1, ahh | 16:16 |
| sploving1 | hi | 16:16 |
| @sonney2k | you left without explaining | 16:16 |
| @sonney2k | <sploving1> hi sonney2k | 16:16 |
| @sonney2k | <sploving1> coud not apply org.shogun.BaseKernel save(org.shogun.SWIGTYPE_p_shogun__CFile) to (org.shogun.AsciiFile) | 16:16 |
| @sonney2k | ? | 16:16 |
| @sonney2k | what does this mean? | 16:16 |
| sploving1 | a compile error | 16:16 |
| sploving1 | the example is : | 16:16 |
| @sonney2k | sploving1, occurring when? | 16:16 |
| @sonney2k | (it compiles here) | 16:17 |
| @sonney2k | shogun compile or java example? | 16:17 |
| @sonney2k | details man details please! | 16:17 |
| sploving1 | java exmaple | 16:17 |
| sploving1 | kernel_io_modular | 16:18 |
| sploving1 | System.loadLibrary("Library"); | 16:18 |
| @sonney2k | I see | 16:18 |
| @sonney2k | I guess the same issue like always | 16:18 |
| @sonney2k | let me check | 16:18 |
| sploving1 | it happens at "kernel.save(f);" OKay | 16:18 |
| * sonney2k recompiles | 16:19 | |
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| @sonney2k | sploving1, fixed | 16:20 |
| CIA-32 | shogun: Soeren Sonnenburg master * rb4af03b / src/modular/Kernel.i : add missing %import to fix compilation issue of kernel_io_modular - http://bit.ly/lZ5yBB | 16:20 |
| sploving1 | okay. | 16:20 |
| sploving1 | thx. | 16:20 |
| @sonney2k | sploving1, it is always the same thing and fix | 16:20 |
| sploving1 | now I am working testcase. | 16:21 |
| sploving1 | which file do i need add first? | 16:21 |
| sploving1 | test_one.java? | 16:21 |
| @sonney2k | sploving1, did you already do all examples by now? | 16:21 |
| @sonney2k | sploving1, I would write two scripts: tester.java and generator.java - that's all | 16:21 |
| @sonney2k | (no more that is) | 16:21 |
| @sonney2k | f-x, please send a patch to fix the macroish definition | 16:22 |
| sploving1 | not yet. they are simple but trival. I would add them not in a day | 16:22 |
| @sonney2k | f-x, and btw thanks for the polished patch | 16:22 |
| @sonney2k | sploving1, how many are left? | 16:22 |
| sploving1 | I did not count on them. sparse left and ushort are not supported now | 16:23 |
| f-x | sonney2k: ok.. and btw is the overloading problem fixed? i mean the confusion we had with the compiler using the base/derived class function | 16:24 |
| @sonney2k | f-x, I still don't understand how this can work... | 16:25 |
| sploving1 | example are not difficult for me. I would work on test_suite at the same time | 16:25 |
| @sonney2k | sploving1, ok | 16:25 |
| @sonney2k | sploving1, then just continue | 16:26 |
| sploving1 | okay | 16:26 |
| f-x | sonney2k: it could be that i've overlooked some case, but i'm pretty sure it should work.. where's the problem as you see it? | 16:26 |
| @sonney2k | f-x, I mean we use get_vector(bool, int) etc and then we have get_vector(T, int) - I don't think this overloading works.... I am not sure either but it looks weird... | 16:30 |
| f-x | sonney2k: it does since get_vector(T, int) isn't templated... i just imagine each version of the templated class to contain one overloaded implementation of get_vector | 16:31 |
| f-x | which overloads only the get_vector version specific to the class type | 16:31 |
| f-x | if get_vector was templated within the class, it wouldn't work probably | 16:31 |
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| @sonney2k | f-x, is this documented somewhere? I mean don't get me wrong - if it is - we have a very elegant solution :) | 16:53 |
| f-x | sonney2k: i read about this kind of thing on the usual forums, i'll give you a link when i find one | 16:54 |
| @sonney2k | f-x, ok - for now I assume it compiles and works with g++ at least :) | 16:55 |
| f-x | sonney2k: compilation works and initial testing too :) | 16:56 |
| f-x | but gotta go somewhere now | 16:56 |
| f-x | later | 16:56 |
| @sonney2k | ok cu | 16:56 |
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| blackburn | sonney2k: very lame question: why we use float64_t, blabla?? :D | 16:58 |
| sploving1 | hello sonney2k, a java simple question: fnam.find(supported) (python). does java string has similar function? I did not see it. http://download.oracle.com/javase/1,5.0/docs/api/java/lang/String.html | 17:05 |
| bettyboo | hug | 17:06 |
| blackburn | fnam.find? | 17:07 |
| sploving1 | yeap. test_one.py | 17:08 |
| blackburn | what should this function does? | 17:08 |
| blackburn | sonney2k: bam! | 17:09 |
| blackburn | ndefined reference to `shogun::CStreamingFile::get_longreal_sparse_vector_and_label(shogun::SGSparseVectorEntry<long double>*&, int&, double&)' | 17:09 |
| blackburn | collect2: ld returned 1 exit status | 17:09 |
| sploving1 | it findes if a substring exits | 17:10 |
| blackburn | indexOf | 17:11 |
| blackburn | ah | 17:11 |
| blackburn | substring | 17:11 |
| blackburn | hm | 17:11 |
| blackburn | yes, it works with substrings too | 17:11 |
| blackburn | it returns -1 if there are no such substr | 17:12 |
| sploving1 | indexof | 17:13 |
| sploving1 | great | 17:13 |
| sploving1 | blackburn, does java have strip method in string class? | 17:26 |
| sploving1 | sonney2k, how to write this in java? name=line.split('=')[1].strip().split("'")[1] | 17:29 |
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| blackburn | sploving1: split | 17:31 |
| blackburn | returns String[] | 17:31 |
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| sploving1 | blackburn, I mean strip not splite | 17:37 |
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| blackburn | what is the diff? | 17:37 |
| sploving1 | strip could delete the whitespace or other character in the end of string | 17:38 |
| sploving1 | "x ".strip return "x" | 17:38 |
| blackburn | split will return the same if you will set regexp right | 17:40 |
| sploving1 | blackburn, yeap. I will have a try | 17:43 |
| @sonney2k | blackburn, git clean -dfx | 17:43 |
| @sonney2k | as usual | 17:43 |
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| blackburn | sonney2k: it not helped | 18:33 |
| blackburn | Classifier_wrap.cxx: In function ‘void* _p_shogun__CArray3T_unsigned_long_long_tTo_p_shogun__CSGObject(void*, int*)’: | 18:34 |
| blackburn | Classifier_wrap.cxx:83572: error: ‘CArray3’ is not a member of ‘shogun’ | 18:34 |
| blackburn | sonney2k: is it compiles on your machine? | 18:34 |
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| @sonney2k | blackburn, hmmhh it did before let me check | 20:04 |
| * sonney2k does git clean -dfx | 20:04 | |
| blackburn | I have no idea ffdddddddddddddtrtryrrertj | 20:07 |
| blackburn | was cleaning my keyboard :D | 20:07 |
| @sonney2k | indeed - so it is the %import game again | 20:08 |
| * sonney2k sighs | 20:08 | |
| blackburn | bitchy thing | 20:09 |
| @sonney2k | blackburn, do you recall how we fixed it last time | 20:09 |
| @sonney2k | I added %import "Library.i" to Kernel.i | 20:09 |
| @sonney2k | and I guess that this is now the culprit | 20:09 |
| blackburn | there was a preprocessor thing | 20:09 |
| blackburn | and you added preprocessor_includes almost everywhere | 20:09 |
| @sonney2k | blackburn, I thought I removed this later - no? | 20:10 |
| @sonney2k | lemme check | 20:10 |
| @sonney2k | ahh I see | 20:10 |
| @sonney2k | screw it - I have no idea what is going on | 20:13 |
| @sonney2k | let me remove this %import and all the preproc imports | 20:13 |
| blackburn | hehe | 20:21 |
| blackburn | it is really strange | 20:21 |
| blackburn | we add it, remove it ehhr | 20:21 |
| @sonney2k | blackburn, if you can make sense of this problem let me know | 20:22 |
| blackburn | sonney2k: of course | 20:33 |
| blackburn | sonney2k: I don't like this practice of including *_includes almost everywhere | 20:46 |
| blackburn | can we avoid this completely? | 20:46 |
| @sonney2k | blackburn, if I knew how I would do it | 20:46 |
| blackburn | hmm | 20:47 |
| blackburn | I will make a tri | 20:47 |
| blackburn | try | 20:47 |
| @sonney2k | blackburn, don't try more than a week :) | 20:51 |
| blackburn | seems adding Library_includes help, right? | 20:51 |
| @sonney2k | I dont' know | 20:52 |
| blackburn | I'll let you know in a minute | 20:52 |
| blackburn | we should get some more developers! | 20:52 |
| blackburn | okay our bugfixes for most of errors is to add some include :D | 20:57 |
| blackburn | segfault? add include! | 20:57 |
| @sonney2k | blackburn, or have everything in one file | 20:58 |
| CIA-32 | shogun: Sergey Lisitsyn master * rfbbd60b / (src/modular/Classifier.i src/modular/Regression.i): Get this shit to compile - http://bit.ly/j1S1Rl | 20:58 |
| blackburn | the whole shogun in one file could be funny | 20:58 |
| @sonney2k | blackburn, pretty polite commit msg | 20:59 |
| blackburn | sonney2k: but informative :D | 20:59 |
| @sonney2k | now there for eternity :D | 20:59 |
| @sonney2k | yeah - it basically says: if you do swig wrapping do one big blob | 21:00 |
| @sonney2k | and include everything in there | 21:00 |
| blackburn | the most strangest thing - it emerges in some completely accidental moments | 21:01 |
| @sonney2k | blackburn, no | 21:04 |
| @sonney2k | blackburn, I needed to %import Libary in Kernel.i because Kernels need Files | 21:04 |
| blackburn | ah | 21:04 |
| @sonney2k | and voila classifiers need kernels | 21:04 |
| blackburn | hmm | 21:04 |
| @sonney2k | and regression needs kernels | 21:04 |
| @sonney2k | so these includes were missing | 21:05 |
| blackburn | I see | 21:05 |
| @sonney2k | the problem is that swig does not do recursive inclusion without the -includeall switch | 21:05 |
| @sonney2k | but when I enabled that switch it tried to wrap also glibc and other things | 21:05 |
| blackburn | from linux.Kernel import Drivers :D | 21:06 |
| blackburn | sonney2k: I think it is ok - we don't really add those 'modules' every day | 21:08 |
| @sonney2k | blackburn, yes only as long as sploving is working on the java examples | 21:08 |
| blackburn | sonney2k: what is his mid-term task& | 21:09 |
| @sonney2k | java_modular | 21:11 |
| blackburn | and next? | 21:11 |
| blackburn | ruby? | 21:11 |
| @sonney2k | missing examples and 2 paragraphs documenting how to use it | 21:11 |
| @sonney2k | ahh and tester.java / generator.java | 21:12 |
| blackburn | the whole project is about java?? | 21:12 |
| @sonney2k | so that the scripts can be tested | 21:12 |
| @sonney2k | after mid-term lua and ruby | 21:12 |
| blackburn | 2 paragraphs documenting? ;D | 21:12 |
| blackburn | oh sh~ | 21:12 |
| @sonney2k | blackburn, yeah it is just java for this http://www.shogun-toolbox.org/doc/modular_tutorial.html and http://www.shogun-toolbox.org/doc/installation.html | 21:13 |
| blackburn | sonney2k: do you have some snippet related to some dna possible to port as graphical example in clojure? | 21:14 |
| blackburn | I'm pretty interested in clojure and I will make some pretty example with it some day | 21:15 |
| @sonney2k | graphical example of DNA? | 21:15 |
| blackburn | yes why not? | 21:15 |
| blackburn | the first idea came in my mind: you did some splice site detection, right? | 21:16 |
| blackburn | correct me if I go wrong, it is some chunk of dna and we can show/zoom it somehow | 21:17 |
| blackburn | no? | 21:17 |
| blackburn | I believe that pretty graphical examples is a key to popularity :D | 21:19 |
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| in3xes | Guest32079, got yourself a shellmix account? Can I use that znc service too? | 21:40 |
| in3xes | looks like a free service | 21:42 |
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| CIA-32 | shogun: Sergey Lisitsyn master * r0440c90 / (src/libshogun/lib/arpack.cpp src/libshogun/lib/arpack.h): Arpack wrapper improvements - http://bit.ly/nLmmJC | 22:30 |
| CIA-32 | shogun: Sergey Lisitsyn master * rf97613f / src/libshogun/lib/arpack.cpp : Removed junk at arpack wrapper - http://bit.ly/pU5BT8 | 22:32 |
| blackburn | i got tired with these arpack affairs.. | 22:35 |
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| --- Log closed Wed Jul 06 00:00:49 2011 | ||
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