IRC logs of #shogun for Tuesday, 2011-08-23

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--- Log opened Tue Aug 23 00:00:15 2011
blackburnnevermind I will never say about that00:00
CIA-87shogun: Sergey Lisitsyn master * rcc4c0a8 / .gitignore : Updated gitignore - http://git.io/EMnxBg00:09
CIA-87shogun: Sergey Lisitsyn master * raa4de69 / (27 files in 10 dirs): Warning fixes - http://git.io/AW1NAQ00:09
blackburnsonney2k: no more warnings in pythonmodular00:09
@sonney2kblackburn, great00:09
@sonney2kblackburn, btw doc doesn't build right now00:09
blackburnokay I'll fix00:09
CIA-87shogun: Soeren Sonnenburg master * r4f5eb01 / doc/Doxyfile : update doxyfile to new dir layout - http://git.io/Ui_Rmw00:10
@sonney2kblackburn, I've comitted the new doxyfile00:10
@sonney2kbut still there is an error in some latex formula somewhere00:11
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CIA-87shogun: Sergey Lisitsyn master * rbc4d5de / src/shogun/kernel/WaveletKernel.h : Fixed doc in wavelet kernel - http://git.io/fn54EQ00:14
blackburnsonney2k: works now00:16
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@sonney2kblackburn, thanks00:24
@sonney2kg' night00:25
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CIA-87shogun: Sergey Lisitsyn master * ra3f2933 / src/shogun/lib/GCArray.h : Fix for GCArray - http://git.io/FkhCKQ12:15
@sonney2kblackburn, the GCArray fix is in now  now? does it compile w/ it?12:37
blackburncompiles on my machine12:38
* sonney2k recompiles12:42
@sonney2kshogun-buildbot, we miss you!12:42
shogun-buildbotWhat you say!12:42
CIA-87shogun: Sergey Lisitsyn master * rff913e7 / (2 files): Added test for fibonacci heap - http://git.io/BrXqmg12:53
CIA-87shogun: Soeren Sonnenburg master * r59a6f41 / (19 files in 2 dirs):13:05
CIA-87shogun: assume make install was called before running lua examples / check.sh13:05
CIA-87shogun: and remove shogun.lua / always use modshogun.Label etc - http://git.io/lo-Oaw13:05
CIA-87shogun: Soeren Sonnenburg master * ra5262da / src/NEWS : version will be 1.0.0 - http://git.io/_yzidA13:05
CIA-87shogun: Soeren Sonnenburg master * r79b2a0e / (src/Makefile.template src/configure): use pkg-config for lua autodetection and add make install target - http://git.io/j_AkAg13:05
CIA-87shogun: Sergey Lisitsyn master * r9f349fd / (3 files): Added hashset example, fixed fibonacci heap one - http://git.io/VW-NYw13:30
@sonney2kblackburn, do you know whether csharp has sth similar to java's .jar's?13:35
blackburnI don't know13:41
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phetHi14:09
phetis anybody here?14:09
phetsonney2k: hi14:18
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@sonney2kblackburn, so lua / ruby examples install nicely now19:54
blackburnok19:54
@sonney2kand make check-examples should work for them19:54
@sonney2k(they take the library path etc from the installed dir I hope)19:54
@sonney2know csharp/java is still not resolved19:54
@sonney2kotherwise documentation and automated install and of course migration stuff19:55
@sonney2kthen we are good19:55
blackburnjava classpath things are ugly19:56
@sonney2khorrible19:56
blackburnI'm now trying to write simple clojure example19:57
@sonney2kthere is no standard for where to install java extensions (like /usr/include / usr/lib)19:57
blackburnwhat is default classpath in debian19:57
blackburn?19:57
blackburnsonney2k: btw it is possible to create some ShogunLoader loading shogun and changing classpath internally20:00
blackburnSystem.setProperty("java.library.path","path")20:01
@sonney2kblackburn, there is none20:01
blackburneh?20:01
@sonney2kI think they are planning to do implemnt sth like that20:01
@sonney2kextension are however usually under /usr/share/java/xxx.jar20:02
blackburnwho they?20:02
@sonney2kthe pkg-java team20:02
blackburnhow is it related?20:03
blackburnwe do export classpath in our check.sh20:04
blackburnanyway we shouldn't do export20:06
blackburnI would like to change it now20:06
blackburnfail20:25
@sonney2kblackburn, IMHO the examples should all assume that things are in CLASSPATH already20:27
@sonney2kno messing around with classpath direcly20:27
blackburnsonney2k: sure but we can avoid export20:27
@sonney2kblackburn, I will remove all export etc stuff from examples20:28
@sonney2kblackburn, it really should be20:28
@sonney2kconfigure20:28
@sonney2kmake20:28
@sonney2kmake install20:28
@sonney2kmake check-examples20:28
blackburnit is the thing I'm trying to do now20:28
@sonney2k(so things are in desired locations and should run)20:28
@sonney2kblackburn, btw the shop where I ordered the new machine sent me a dhl tracking #20:29
@sonney2kso 1-2 days from now and all good again I hope :)20:29
blackburnwhy didn't you buy it in real shop?20:29
@sonney2kblackburn, I don't have time to go to a real shop20:30
blackburnwo20:30
blackburnw20:30
blackburnif you don't overstate this I can't imagine your life :D20:32
blackburnokay fuck it, I hate this classpath/libpath conception20:34
blackburnI would better do something else20:34
CIA-87shogun: Sergey Lisitsyn master * r2e88999 / src/shogun/distance/Distance.h : Improved CDistance brief - http://git.io/mwkPXQ21:59
CIA-87shogun: Sergey Lisitsyn master * r785447e / (3 files in 2 dirs): Warnings fixes - http://git.io/lZmBgQ22:25
blackburnI'm afraid of a lot of work to do still22:45
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blackburnsonney2k: get_num_bits_in_histogram()=5 > get_num_bits()=223:15
blackburn[ERROR] ALPHABET too small to contain all symbols in histogram23:15
blackburngot this for dna data..23:15
blackburnin application/arts23:17
blackburnah I see23:28
blackburnI'm happy it is not a shogun issue23:29
CIA-87shogun: Sergey Lisitsyn master * r495c1a9 / (applications/arts/arts.py applications/arts/signal_sensor.py): Back ARTS to work - http://git.io/PjuHOw23:39
CIA-87shogun: Sergey Lisitsyn master * rac212b0 / src/shogun/machine/KernelMachine.h : Fix for kernelmachine - http://git.io/FPv8iQ23:54
CIA-87shogun: Sergey Lisitsyn master * r7e47856 / applications/asp/signal_detectors.py : Back ASP to work - http://git.io/1sx-Cg23:55
--- Log closed Wed Aug 24 00:00:19 2011
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