IRC logs of #shogun for Thursday, 2011-08-25

« Wednesday, 2011-08-24 Index Friday, 2011-08-26 »
--- Log opened Thu Aug 25 00:00:22 2011
shogun-buildbotbuild #83 of java_modular is complete: Failure [failed compile]  Build details are at http://www.shogun-toolbox.org:5347/builders/java_modular/builds/83  blamelist: fraggerx@gmail.com00:13
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CIA-87shogun: Soeren Sonnenburg master * r967a7f2 / src/Makefile.template : add lua modular check-install target - http://git.io/oba3iA09:19
CIA-87shogun: Soeren Sonnenburg master * r1cf4605 / examples/undocumented/lua_modular/serialization_complex_example.lua : lua example now erases cruft - http://git.io/vCEi4Q09:30
CIA-87shogun: Soeren Sonnenburg master * re4af932 / examples/undocumented/lua_modular/check.sh : don't check load.lua - http://git.io/bcCAQg09:30
CIA-87shogun: Soeren Sonnenburg master * r2117954 / src/.generate_link_dependencies.py : enum.swg has no deps - http://git.io/-Lpm4A09:30
shogun-buildbotbuild #87 of lua_modular is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org:5347/builders/lua_modular/builds/8710:21
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@sonney2kblackburn, good news - we will have another 3 build slaves at tu for osx / windows / linux :)12:30
blackburnnice12:30
blackburnhow soon?12:32
@sonney2kno idea12:46
@sonney2kfew week(s) I guess12:46
blackburnbad14:23
@sonney2kblackburn, no no - that's actually great!14:57
blackburnbut it would be after our release15:00
blackburnsonney2k: so is TU any interested of shogun?15:03
@sonney2kblackburn, everything will be after our release now15:03
blackburnwhat is the everything?15:03
@sonney2kall new features / hardware / support whatever15:04
@sonney2kblackburn, I expect many questions on the mailinglist once the new version is out15:04
blackburnwe probably should post changes on the ml15:04
@sonney2kblackburn, we have a changes mailinglist16:18
blackburn?!16:18
@sonney2kblackburn, shogun-commits@shogun-toolbox.org16:18
blackburncommits?16:19
blackburnbtw how many subscribers are there?16:19
@sonney2kwhenever one commits sth then it is posted to this list16:20
@sonney2k(I always keep track via this)16:21
@sonney2kone could add build failures too btw :)16:21
@sonney2kblackburn, shogun list or commits?16:21
blackburnshogun list16:21
@sonney2k19216:22
blackburnhuh I thought >50016:24
@sonney2kno there where never that many16:24
blackburn*parse error*16:25
blackburnsonney2k: can you suggest any other important feature of genomic data?16:27
blackburnexcept GC content16:27
@sonney2kin tss there is TAAAT or TATA or variants of this sth like 30bp before the tss16:30
* blackburn 's brain exploded16:31
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CIA-87shogun: Soeren Sonnenburg master * rb378001 / examples/undocumented/python_modular/structure_dynprog_modular.py :19:45
CIA-87shogun: add scipy compatibility wrapper for mat_struct19:45
CIA-87shogun: this should fix the python_modular dynprog example on newer scipy's - http://git.io/QvNw2g19:45
@sonney2kblackburn, you did a *great* job in reducing all these warnings19:53
@sonney2kbig kudos for that!19:53
blackburnsonney2k: it was pretty simple in compare to writing a full doc haha19:58
@sonney2kblackburn, all green so far http://shogun-toolbox.org:5347/waterfall :)19:59
blackburnnice20:09
blackburnsonney2k: I'm still thinking about integration of dim reduction things and heiko's stuff20:10
blackburnand I don't like that there is no out-of-sample extensions for lle/mds/etc20:10
blackburnI simply can't come up with idea how to do that20:11
blackburni.e. init can't return/modify given features but where to store embedding..?20:11
shogun-buildbotbuild #89 of python_modular is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org:5347/builders/python_modular/builds/8920:15
@sonney2kyay!20:17
CIA-87shogun: Soeren Sonnenburg master * r1b65716 / src/configure : improve ruby autodetection and fix fail with modshogun and static build - https://github.com/shogun-toolbox/shogun/commit/1b65716a669bfa26848d3e72f60a07ff0a3ee9c221:50
CIA-87shogun: Soeren Sonnenburg master * re4ca15d / src/interfaces/java_modular/swig_typemaps.i : attempt to fix the swig enum include path - https://github.com/shogun-toolbox/shogun/commit/e4ca15df91b3e0349892d1310f3d6275cbc924b121:59
@sonney2kblackburn, I am not sure how to do it best either22:16
blackburnme too22:17
blackburnand I fell myself like marvin today (again)22:17
@sonney2kblackburn, you better create a new branch and implement something you have fun with22:18
@sonney2kblackburn, getting close to a release is usually painful22:19
@sonney2kthis one is the most painful every though - just extremely many changes22:19
@sonney2kand I would have wished that we had all the infrastructure before GSoC22:19
@sonney2know with trac/git/buildbot/irc and mailinglists all up, it would be much more simple22:20
blackburnI don't know what to do now22:20
@sonney2kblackburn, fix java examples22:21
blackburnah yes22:21
@sonney2ksome crash / don't run22:21
@sonney2kseems like ruby works nicely22:21
@sonney2kI couldn't figure out how to install csharp stuff22:21
@sonney2kand where to22:21
blackburnabsolutely no idea22:22
@sonney2kthat is the last interface missing to be included for real...22:22
blackburnall the students have gone :D22:24
@sonney2kYeah I guess that's life - though having you in the team is a very positive exception22:27
@sonney2kand who knows I think heiko and f-x will occasionally contribute22:28
@sonney2kblackburn, for me now the most important thing is a new webpage structure22:29
@sonney2klike make doc needs to properly create a documentation22:29
blackburnyeah current webpage sucks22:30
@sonney2kand install it to the webpage22:30
@sonney2kblackburn, how about /doc - for the most current doc22:30
blackburndouble sucks22:30
@sonney2kand then /doc/<shogun_version> for the older ones?22:30
@sonney2kblackburn, double?22:30
@sonney2kwebpage you mean22:30
@sonney2k?22:30
blackburneverything sucks :D22:31
blackburnwebpage is non informative22:31
blackburndoc is outdated22:31
blackburnyeah idea about moving doc is good22:31
@sonney2kblackburn, how about you design a new webpage layout?22:34
@sonney2k(after you've done the java example fixes)22:34
blackburnI'm too lame to do this well :(22:34
@sonney2kwe could use jquery to have screenshot/slidshow on the front page22:34
blackburnwell I could but it would take much time22:35
@sonney2kblackburn, well then find some inspiration somewhere and tell me22:35
@sonney2kno it is easy22:35
@sonney2kI programmed my homepage within 1 day or so22:35
blackburneasy but I don't like web and aren't familiar with any beautiful web22:35
@sonney2k(w/o content - the django based framework behind)22:35
blackburnjquery/blabla things22:35
@sonney2kblackburn, yeah but you can search for a site that you like (layout wise) and show me22:36
blackburnah okay22:36
@sonney2kthen we can inherit the good ideas22:36
blackburngood site is really important22:36
blackburnsonney2k: are shortreal distance matrices any needed?23:37
@sonney2kwell they are memory efficient - so why not keep them?23:46
blackburnI'm currently refactoring cdistance23:47
blackburnokay I'll copypaste it23:47
blackburnsonney2k: I need to remove SG_PROGRESS things from cdistance, is it ok?23:53
@sonney2kblackburn, or use templates...23:53
blackburnI can't check SG_PROGRESS in parallel threads..23:54
@sonney2kblackburn, well you could for the thread that runs in the main thing23:55
@sonney2kanyway need to sleep now23:55
@sonney2kcu23:55
blackburnsee you23:55
--- Log closed Fri Aug 26 00:00:25 2011
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