| --- Log opened Sat Nov 19 00:00:27 2011 | ||
| -!- in3xes [~in3xes@49.249.162.221] has quit [Ping timeout: 258 seconds] | 01:58 | |
| -!- in3xes [~in3xes@180.149.49.230] has joined #shogun | 02:13 | |
| -!- in3xes [~in3xes@180.149.49.230] has quit [Ping timeout: 252 seconds] | 02:18 | |
| -!- in3xes [~in3xes@180.149.49.230] has joined #shogun | 04:42 | |
| -!- in3xes [~in3xes@180.149.49.230] has quit [Ping timeout: 260 seconds] | 04:47 | |
| -!- in3xes [~in3xes@180.149.49.230] has joined #shogun | 05:27 | |
| -!- in3xes [~in3xes@180.149.49.230] has quit [Ping timeout: 240 seconds] | 05:33 | |
| -!- in3xes [~in3xes@210.212.58.168] has joined #shogun | 05:48 | |
| -!- in3xes [~in3xes@210.212.58.168] has quit [Ping timeout: 248 seconds] | 05:55 | |
| -!- in3xes [~in3xes@180.149.49.230] has joined #shogun | 06:08 | |
| -!- in3xes [~in3xes@180.149.49.230] has quit [Ping timeout: 244 seconds] | 06:13 | |
| -!- in3xes [~in3xes@180.149.49.230] has joined #shogun | 06:32 | |
| -!- in3xes [~in3xes@180.149.49.230] has quit [Ping timeout: 276 seconds] | 06:37 | |
| -!- in3xes [~in3xes@49.249.163.218] has joined #shogun | 06:43 | |
| -!- in3xes [~in3xes@49.249.163.218] has quit [Remote host closed the connection] | 07:06 | |
| -!- blackburn [~blackburn@188.122.240.27] has joined #shogun | 10:49 | |
| -!- in3xes [~in3xes@49.249.163.234] has joined #shogun | 15:27 | |
| -!- in3xes [~in3xes@49.249.163.234] has quit [Ping timeout: 240 seconds] | 15:47 | |
| CIA-37 | shogun: Sergey Lisitsyn master * ra41c477 / (2 files): Added MKL memleak test - http://git.io/ugLTHA | 17:38 |
|---|---|---|
| shogun-buildbot | build #336 of r_static is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/r_static/builds/336 blamelist: blackburn91@gmail.com | 17:44 |
| shogun-buildbot | build #353 of cmdline_static is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cmdline_static/builds/353 blamelist: blackburn91@gmail.com | 17:44 |
| shogun-buildbot | build #336 of octave_static is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/octave_static/builds/336 blamelist: blackburn91@gmail.com | 17:46 |
| shogun-buildbot | build #328 of python_static is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/python_static/builds/328 blamelist: blackburn91@gmail.com | 17:47 |
| blackburn | hmm | 17:49 |
| -!- in3xes [~in3xes@49.249.160.24] has joined #shogun | 18:50 | |
| -!- blackburn [~blackburn@188.122.240.27] has quit [Remote host closed the connection] | 19:57 | |
| -!- blackburn [~blackburn@188.122.240.27] has joined #shogun | 19:58 | |
| -!- Lina [bc62c5d1@gateway/web/freenode/ip.188.98.197.209] has joined #shogun | 20:32 | |
| Lina | Hi | 20:33 |
| blackburn | hi | 20:35 |
| blackburn | Lina: guess who | 20:35 |
| Lina | hi | 20:36 |
| Lina | i downloaded and compiled everything from blank | 20:36 |
| blackburn | Lina: and it still is not working? | 20:37 |
| Lina | blackburn: no | 20:37 |
| blackburn | bad bad | 20:37 |
| blackburn | ".depend"? | 20:37 |
| Lina | yes, same error | 20:38 |
| Lina | make[1]: *** No rule to make target `.depend', needed by `libshogun.so.11.0'. Stop. | 20:38 |
| blackburn | okay | 20:39 |
| blackburn | let me check again | 20:39 |
| blackburn | Lina: did you download it with git? | 20:39 |
| blackburn | i.e. not as archive but git clone? | 20:40 |
| Lina | no, i downloaded it directly from https://github.com/shogun-toolbox/shogun/downloads | 20:40 |
| blackburn | Lina: could you please git clone it? | 20:41 |
| Lina | yes, i will try | 20:43 |
| blackburn | Lina: it could help us to find out which commit caused your error | 20:44 |
| Lina | ok, that seems to work | 20:53 |
| -!- in3xes [~in3xes@49.249.160.24] has quit [Ping timeout: 260 seconds] | 20:53 | |
| Lina | it is compiling | 20:53 |
| blackburn | Lina: hmm I don't know the cause but let it go away at least for now | 20:53 |
| Lina | thanks | 20:53 |
| blackburn | if you have time (I have) we could discuss how to fix your issue | 20:54 |
| Lina | sure | 20:54 |
| blackburn | Lina: could you please try to run your script without System.gc and check memory usage with top | 20:54 |
| blackburn | ? | 20:54 |
| Lina | yes, if the compilation is done, i will test it | 20:56 |
| Lina | i'll let you know | 20:56 |
| blackburn | heh yes | 20:56 |
| blackburn | it is pretty slow | 20:56 |
| Lina | yes | 20:56 |
| blackburn | Lina: btw you can use --disable-optimization to speed up your compilation | 20:56 |
| blackburn | in configure | 20:56 |
| blackburn | Lina: how soon you need to get these results? | 20:57 |
| blackburn | I can help you with rewriting it into more stable python or even C++ | 20:57 |
| blackburn | don't afraid python it is easy :) | 20:57 |
| Lina | thanks :-) | 20:57 |
| blackburn | so what should I do? | 20:58 |
| blackburn | although my real work is heavily engaged with java ee I really don't like it :D | 20:59 |
| Lina | i need the results soon, since i am collaborating with somone | 20:59 |
| Lina | haha | 20:59 |
| blackburn | and java interface is result of this gsoc | 20:59 |
| blackburn | we have some issues already so it is pretty fresh | 20:59 |
| Lina | if there are still memory leaks when running the script, then i have no other choice.. | 21:00 |
| blackburn | Lina: it would be really better to use python, you will like it | 21:00 |
| Lina | :-) | 21:00 |
| blackburn | oh it doesn't looks like I'm talking about python if we remove 'python' | 21:00 |
| blackburn | Lina: pros is you don't have to loadlibrary, set paths, etc | 21:01 |
| blackburn | Lina: did it compile already? | 21:01 |
| Lina | yes, but i have to do the confgure again and set "prefix" since i am not able to do make install otherwise | 21:03 |
| Lina | i have no root access on this computer | 21:03 |
| blackburn | Lina: oh don't you use your notebook now? | 21:03 |
| Lina | no | 21:04 |
| blackburn | Lina: ok | 21:04 |
| blackburn | Lina: what is os on that machine? | 21:06 |
| shogun-buildbot | build #52 of nightly_default is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_default/builds/52 | 21:08 |
| blackburn | surprise haha | 21:08 |
| blackburn | oh did I broke kernelpca | 21:08 |
| -!- in3xes [~in3xes@49.249.160.250] has joined #shogun | 21:10 | |
| Lina | Linux 2.6.32-5-amd64 | 21:11 |
| blackburn | Lina: and distrib? | 21:13 |
| Lina | Debian 2.6.32-35squeeze2 | 21:14 |
| blackburn | okay | 21:16 |
| Lina | sorry, setting the prefix in ./configure does not help either | 21:18 |
| Lina | when i make install, i get install: cannot remove `//usr/local/lib/R/site-library/sg/libs/sg.so': Permission denied | 21:18 |
| blackburn | Lina: hmm do you configure it with R? | 21:19 |
| Lina | --interfaces=cmdline_static,python_static,r_static,python_modular,ruby_modular,java_modular | 21:20 |
| Lina | yes | 21:20 |
| Lina | so, i try it without R | 21:20 |
| blackburn | Lina: why? do you need all of them? | 21:25 |
| blackburn | it takes \infty time to compile all of them :) | 21:25 |
| -!- blackburn [~blackburn@188.122.240.27] has quit [Remote host closed the connection] | 21:26 | |
| Lina | no, there was no reason for it ;-) in case i need another module... | 21:26 |
| -!- blackburn [~blackburn@188.122.240.27] has joined #shogun | 21:26 | |
| Lina | ok, done | 21:30 |
| Lina | i am running the script now | 21:30 |
| blackburn | Lina: hooray :) | 21:30 |
| Lina | :-) | 21:31 |
| blackburn | Lina: what is memory usage? | 21:31 |
| Lina | 2.3g | 21:36 |
| Lina | but it keeps increasing | 21:36 |
| blackburn | Lina: oh | 21:37 |
| blackburn | Lina: do you have valgrind on that machine? | 21:37 |
| Lina | yes, seems to be installed | 21:37 |
| blackburn | examples/undocumented/libshogun/ | 21:38 |
| blackburn | make | 21:38 |
| blackburn | valgrind --leak-check=full --log-file=log.log ./mkl_memleak_test | 21:38 |
| Lina | hmm, c++ -O3 -g -I/usr/include basic_minimal.cpp -lshogun -L/usr/lib -o basic_minimal basic_minimal.cpp:1:30: error: shogun/base/init.h: No such file or directory basic_minimal.cpp:3: error: 'shogun' is not a namespace-name basic_minimal.cpp:3: error: expected namespace-name before ';' token basic_minimal.cpp: In function 'int main(int, char**)': basic_minimal.cpp:7: error: 'init_shogun' was not declared in this sc | 21:39 |
| Lina | when doing make | 21:39 |
| blackburn | ohhh | 21:39 |
| blackburn | where is shogun installed? | 21:40 |
| -!- blackburn [~blackburn@188.122.240.27] has quit [Remote host closed the connection] | 21:40 | |
| Lina | in my home directory | 21:40 |
| -!- blackburn [~blackburn@188.122.240.27] has joined #shogun | 21:40 | |
| blackburn | damn | 21:40 |
| Lina | ? | 21:41 |
| blackburn | Lina: pidgin is buggy :) | 21:41 |
| Lina | i see :-) | 21:41 |
| blackburn | Lina: you need to specify paths I guess | 21:42 |
| Lina | which ones? | 21:44 |
| blackburn | LD_LIBRARY_PATH | 21:44 |
| blackburn | Lina: is shogun headers in /usr/include? | 21:45 |
| Lina | no | 21:46 |
| blackburn | Lina: where is it? | 21:46 |
| blackburn | then change it in examples/undocumented/libshogun/Makefile | 21:47 |
| blackburn | line 2 or so | 21:47 |
| Lina | ok | 21:49 |
| Lina | compiling.. | 21:50 |
| blackburn | nice! | 21:50 |
| Lina | hm, it seems like valgrind is not installed; /usr/lib/valgrind and /usr/lib64/valgrind only contain the file python.supp | 21:59 |
| blackburn | :( | 21:59 |
| blackburn | Lina: so you can't do valgrind? | 22:04 |
| Lina | no | 22:06 |
| blackburn | Lina: bad.. okay should I rewrite your example into python? | 22:07 |
| blackburn | or do you want try it more? :) | 22:07 |
| Lina | i am not sure if it makes sense to try it more | 22:07 |
| Lina | what do you think? | 22:07 |
| blackburn | Lina: it would be at least faster | 22:09 |
| blackburn | Lina: what if I send it tomorrow? | 22:09 |
| Lina | to write it in python you mean? | 22:09 |
| blackburn | Lina: yes | 22:12 |
| blackburn | I guess it should take less than hour | 22:12 |
| blackburn | Lina: deal? :) | 22:12 |
| -!- Lina [bc62c5d1@gateway/web/freenode/ip.188.98.197.209] has quit [Ping timeout: 265 seconds] | 22:16 | |
| -!- in3xes [~in3xes@49.249.160.250] has quit [Ping timeout: 276 seconds] | 23:41 | |
| -!- in3xes [~in3xes@49.249.161.149] has joined #shogun | 23:58 | |
| --- Log closed Sun Nov 20 00:00:32 2011 | ||
Generated by irclog2html.py 2.10.0 by Marius Gedminas - find it at mg.pov.lt!