| --- Log opened Fri Mar 23 00:00:19 2012 | ||
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| CIA-64 | shogun: Soeren Sonnenburg master * r252a844 / (4 files in 3 dirs): | 09:04 |
|---|---|---|
| CIA-64 | shogun: remove blas/lapack functions from Math headers | 09:04 |
| CIA-64 | shogun: in particula drop dgemm / dgemv which can be directly used from atlas | 09:04 |
| CIA-64 | shogun: anyways. - http://git.io/NpKy3g | 09:04 |
| sonne|work | shogun-buildbot: now buildbot lets see if you will be happy again | 09:06 |
| n4nd0 | :) | 09:24 |
| sonne|work | n4nd0: of course he (or she) is not | 09:25 |
| sonne|work | different problem | 09:25 |
| n4nd0 | sonne|work: haha | 09:27 |
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| gsomix | hi | 10:20 |
| sonne|work | moin gsomix | 10:25 |
| * gsomix is now looking at "wikipedia/Moin" :) | 10:27 | |
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| blackburn | sonne|work: what's up with lapack test? | 11:05 |
| sonne|work | blackburn: atlas was always disabled on buildbot - now that it is enabled it triggers bugs | 11:06 |
| blackburn | sonne|work: clapack.h missing h\mm | 11:07 |
| blackburn | sonne|work: https://github.com/shogun-toolbox/shogun/commit/1336edf6a03ae51575f04d6630f87f5b415f2e87 why did you do that? | 11:08 |
| blackburn | I mean it was working before | 11:08 |
| sonne|work | no it was not working before | 11:10 |
| sonne|work | to autodetect atlas | 11:10 |
| blackburn | sonne|work: on my ubuntu it was detecting atlas pretty well | 11:12 |
| sonne|work | on my machine running debian unstable not / nor on n4nd0's machine | 11:13 |
| blackburn | anyway something goes wrong with HAVE_* things I guess | 11:13 |
| sonne|work | no | 11:13 |
| blackburn | what is wrong then? | 11:13 |
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| sonne|work | problem is that INCLUDES need to be used in examples | 11:13 |
| blackburn | ah right | 11:13 |
| sonne|work | so what we have in .config needs to be propagated to be used in make check-examples | 11:14 |
| n4nd0 | sonne|work: I don't know if this may help but yesterday when I configure with includes=/usr/include/atlas I got octave to work good | 11:15 |
| n4nd0 | sonne|work: but this morning I discovered that the examples in libshogun failed | 11:15 |
| n4nd0 | clapack.h not found IIRC | 11:15 |
| sonne|work | n4nd0: yeah - that is what we are working on... | 11:15 |
| n4nd0 | I had to configure without the flag and compile again | 11:15 |
| blackburn | sonne|work: btw as for tests, you probably have seen I've fixed serialization related errors | 11:17 |
| blackburn | sonne|work: and yes svmocas test should be 'resaved' | 11:17 |
| sonne|work | no - when? | 11:17 |
| blackburn | sonne|work: well in the beginning of this week or so | 11:18 |
| blackburn | I wrote parameter map stuff | 11:18 |
| blackburn | sonne|work: https://github.com/shogun-toolbox/shogun/commit/eec65f511fd1f33edfe4f58c195d8443a45a03a8 that is | 11:18 |
| gsomix | sonne|work, I responded to comments on github | 11:19 |
| CIA-64 | shogun: Soeren Sonnenburg master * r26aff14 / src/Makefile.template : propagate INCLUDES to libshogun examples - http://git.io/ZLGYkA | 11:19 |
| sonne|work | blackburn: nice - but I think we need to increase parameter version in NEWS too | 11:21 |
| sonne|work | i.e. paramter 0 -> parameter 1 | 11:22 |
| blackburn | sonne|work: exactly | 11:22 |
| blackburn | sonne|work: and default version as well | 11:22 |
| blackburn | if it wasn't changed before | 11:22 |
| CIA-64 | shogun: Soeren Sonnenburg master * r956b5e4 / src/NEWS : increment parameter format version 0 -> 1 - http://git.io/SMlZ1g | 11:23 |
| sonne|work | it used to be 0 | 11:23 |
| blackburn | nevertheless I don't like this soo hard back compatibility stuff but I was surprised how well-designed it is | 11:24 |
| blackburn | sonne|work: could you please emphasize in how to apply guide we don't need test commits/comments/requests | 11:27 |
| blackburn | 2 cases already I don't know how to tell them we don't need it | 11:27 |
| sonne|work | blackburn: should this be 1 one at the end SGParamInfo("kernel_backup", CT_SCALAR, ST_NONE, PT_SGOBJECT, 0) ? | 11:30 |
| sonne|work | I mean doesn't kernel_backup exist only in version 1? | 11:31 |
| blackburn | sonne|work: yeah my mistake probably | 11:31 |
| blackburn | sonne|work: custom kernel as well | 11:31 |
| blackburn | data_locked is already 0 | 11:31 |
| sonne|work | could you please fix it? | 11:31 |
| blackburn | sonne|work: I can't sorry, I have no access to my notebook right now | 11:32 |
| sonne|work | ok done | 11:33 |
| CIA-64 | shogun: Soeren Sonnenburg master * r3f877e2 / src/shogun/machine/KernelMachine.cpp : custom_kernel / kernel_backup appeared only in version 1 - http://git.io/jpXaVw | 11:33 |
| blackburn | sonne|work: and probably my port 22 is blocked here :D | 11:33 |
| blackburn | my? git I mean | 11:34 |
| blackburn | sonne|work: ok thanks | 11:34 |
| sonne|work | hmmhh still failing | 11:34 |
| blackburn | sonne|work: what fails? | 11:34 |
| sonne|work | http://www.shogun-toolbox.org/buildbot/builders/cmdline_static/builds/576/steps/test_1/logs/stdio | 11:35 |
| sonne|work | not sure if this is already the version with the Makefile.template patch | 11:35 |
| sonne|work | yeah it is | 11:36 |
| blackburn | sonne|work: where is clapack.h on your machine? | 11:36 |
| CIA-64 | shogun: Soeren Sonnenburg master * r0445a57 / examples/undocumented/libshogun/check.sh : let check.sh propagate INCLUDES too - http://git.io/Ru9fSQ | 11:37 |
| sonne|work | now it should work... | 11:37 |
| * sonne|work crosses fingers | 11:37 | |
| blackburn | hah | 11:37 |
| blackburn | sonne|work: does rest code like converters etc work? | 11:37 |
| blackburn | with new changes I mean | 11:37 |
| blackburn | is it only related to examples? | 11:38 |
| sonne|work | blackburn: atlas was always off on machines where clapack.h was not in /usr/include/ | 11:45 |
| sonne|work | so it can only affect libshogun based stuff | 11:45 |
| sonne|work | gsomix: I just had a look - nice work. so can this be applied as is? | 11:48 |
| sonne|work | gsomix: or do we have to deal with http://www.mail-archive.com/numpy-discussion@scipy.org/msg29403.html somehow? | 11:49 |
| shogun-buildbot | build #578 of cmdline_static is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cmdline_static/builds/578 | 12:08 |
| sonne|work | yay! :-) | 12:08 |
| blackburn | success | 12:08 |
| shogun-buildbot | build #556 of r_static is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/r_static/builds/556 | 12:13 |
| blackburn | sonne|work: new crazy idea: we should encourage some ML teaching course to use shogun! | 12:17 |
| shogun-buildbot | build #557 of octave_static is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/octave_static/builds/557 | 12:18 |
| sonne|work | blackburn: not a crazy idea - but you know I am not a professor so it is tough... | 12:18 |
| sonne|work | so in case you become one (or heiko) -> do it :) | 12:19 |
| blackburn | sonne|work: I actually can organize something not really official | 12:19 |
| blackburn | but that sucks | 12:19 |
| blackburn | I mean we could contact some professor | 12:19 |
| blackburn | sonne|work: in the crazy case I would like to become a lecturer it would require at least 6 (sic!) years more | 12:21 |
| shogun-buildbot | build #545 of python_static is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/python_static/builds/545 | 12:22 |
| n4nd0 | blackburn: sonne|work I think I could be able to talk about it with a professor here at KTH | 12:24 |
| blackburn | n4nd0: nice! I am personally ready to support something like that | 12:25 |
| blackburn | i.e. with code or so | 12:25 |
| n4nd0 | blackburn: here they have a couple of courses in the ml master where students use simple examples in matlab to see different learning algorithms work | 12:26 |
| n4nd0 | blackburn: I think that the teacher would probably agree if we suggest the idea and give the examples of the stuff they want of course | 12:27 |
| n4nd0 | blackburn: I think it's an awesome idea btw | 12:27 |
| blackburn | n4nd0: just retrieve a list of topics or so | 12:27 |
| blackburn | and we can develop some pretty examples | 12:28 |
| n4nd0 | this is the first course, take a look under lab assignments | 12:28 |
| n4nd0 | http://www.csc.kth.se/utbildning/kth/kurser/DD2431/ml11/ | 12:28 |
| n4nd0 | and here you can see the topics of the other course http://www.csc.kth.se/utbildning/kth/kurser/DD2427/bik12/Schedule.php | 12:29 |
| blackburn | n4nd0: aha will take a look | 12:36 |
| gsomix | sonne|work, as is. if i figured out correctly. | 12:36 |
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| shogun-buildbot | build #384 of python_modular is complete: Failure [failed test_1] Build details are at http://www.shogun-toolbox.org/buildbot/builders/python_modular/builds/384 blamelist: sonne@debian.org | 13:21 |
| blackburn | sonne|work: huh! that's strange ^ | 13:22 |
| sonne|work | leaving CSGObject::migrate | 13:24 |
| sonne|work | leaving CSGObject::migrate | 13:24 |
| sonne|work | *** glibc detected *** python: corrupted double-linked list: 0x0000000000cb23d0 *** | 13:24 |
| sonne|work | seems like we have a problem in one of the data structures migrations use... | 13:24 |
| blackburn | yeah but it is ok on my pc | 13:25 |
| sonne|work | uhh and | 13:26 |
| sonne|work | ../data/regression/KRR_1_15_Gaussian_1en05.mERROR | 13:26 |
| sonne|work | KRR is disabled/unavailable! | 13:26 |
| blackburn | sonne|work: that's because you renamed it | 13:26 |
| sonne|work | ahh yes | 13:27 |
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| gsomix | sonne|work, I sent one more commit | 13:38 |
| gsomix | and now I'm going to the theater. :) | 13:39 |
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| gsomix | I'm back | 17:50 |
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| harshit_ | hi everyone , shogun is giving me an exception when i try to use my own class derived from clinearmachine | 18:37 |
| harshit_ | exception is : | 18:37 |
| harshit_ | [ERROR] assertion w_dim==features->get_dim_feature_space() failed in file machine/LinearMachine.cpp line 54 | 18:37 |
| harshit_ | terminate called after throwing an instance of 'shogun::ShogunException'Aborted | 18:37 |
| harshit_ | Does any one have any idea why this error is coming | 18:37 |
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| @sonney2k | harshit_, the dimensionality of your w vector doesn't match the dim of you examples | 19:57 |
| @sonney2k | so you call apply and it cannot do anything | 19:57 |
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| @sonney2k | blackburn, btw it is only python_modular that is failing... | 19:59 |
| @sonney2k | all the rest is ok now?! | 19:59 |
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| @sonney2k | blackburn, hmmhh many tests work now - but I still have these warnings about data_locked not being there | 20:05 |
| @sonney2k | so I guess something is not working correctly yet... | 20:06 |
| @sonney2k | yeah and the multiclass issue is still there too | 20:06 |
| wiking | blackburn: i have some code | 20:16 |
| wiking | i'll commit it but now i'm off to rest a bit | 20:16 |
| wiking | when u have time and when it's in would be great to have some feedback | 20:17 |
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| --- Log closed Sat Mar 24 00:00:19 2012 | ||
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