| --- Log opened Fri Dec 14 00:00:38 2012 | ||
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| shogun-buildbot | build #179 of nightly_none is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_none/builds/179 | 03:00 |
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| shogun-buildbot | build #217 of nightly_default is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_default/builds/217 | 03:07 |
| shogun-buildbot | build #174 of nightly_all is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_all/builds/174 | 03:26 |
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| erin_ | Hi all, I very much appreciate your work in making such a great toolbox and I am looking forward to work and experiment on it. But I am trying to compile shogun in my matlab and i am very much stuck and troubled. I particularly followed the steps written in the installation page | 10:10 |
| erin_ | ./configure --interfaces=matlab_static make make install | 10:11 |
| erin_ | But I never even reached the 'make' part | 10:11 |
| erin_ | particularly it had an error | 10:12 |
| erin_ | Checking for Matlab developer support (-lmx -lmex -lmat) ... no | 10:12 |
| erin_ | cc -I. -I.. -fPIC -march=pentium3 -mtune=pentium3 -pthread ./configure-10124-504.c -o ./configure-7655-504.o -mno-cygwin -DMATLAB_MEX_FILE -I/MATLAB/R2011b/bin/matlab.exe/extern/include -shared -mno-cygwin -Wl,--version-script,mexFunction.map -Wl,--rpath-link,/MATLAB/R2011b/bin/matlab.exe/extern/lib/win32 -L/MATLAB/R2011b/bin/matlab.exe/bin/win32 -lmx -lmex -lmat -lm -pthread -lz -lbz2 | 10:12 |
| erin_ | I have searched some similar problems regarding this particularly as to why it directs to this type of address: MATLAB/R2011b/bin/matlab.exe/bin/win32 | 10:12 |
| erin_ | so my query is Is it compatible to compile shogun for a win64 and matlab 2011 64-bit? | 10:17 |
| wiking | erin_: still here? | 10:41 |
| erin_ | yes | 10:41 |
| wiking | ok so u r using windows right? | 10:42 |
| erin_ | yes i am | 10:42 |
| wiking | can u compile shogun without matlab_modular? | 10:42 |
| wiking | or matlab_static | 10:43 |
| wiking | so i mean without matlab interface? | 10:43 |
| wiking | because i think you'll need cygwin to compile shogun for windows | 10:44 |
| erin_ | i am using cygwin... it was succesful but not for the matlab_static | 10:44 |
| erin_ | libshogun and the following interfaces: cmdline_static python_static | 10:44 |
| wiking | aha | 10:44 |
| wiking | yeah use python_module if possilb | 10:45 |
| wiking | and cygwin compiled it for 64 bits? | 10:45 |
| erin_ | yes | 10:45 |
| wiking | aha | 10:45 |
| wiking | ok then there's a problem with the configure script | 10:46 |
| erin_ | so it is not possible for matlab? i dont know how to use python -_- | 10:46 |
| wiking | i think it should be possible | 10:46 |
| wiking | just needs some fixing | 10:46 |
| wiking | as it hasn't been prepared to be used with 64 bits matlab | 10:46 |
| wiking | but that doesn't mean that it's not possible | 10:47 |
| erin_ | i see... but for the 32-bit it should work right? | 10:47 |
| wiking | do you have a directory /MATLAB/R2011b/bin/matlab.exe/bin/win64 ? | 10:47 |
| wiking | or soemthing like that? | 10:47 |
| erin_ | i don't.. that is quite confusing actually.. | 10:48 |
| wiking | well it looks like for me that it should work for 32 bits... but as said i never tried it myself before... | 10:48 |
| wiking | mmm | 10:48 |
| wiking | so i guess you have /MATLAB/R2011b/bin right? | 10:48 |
| erin_ | yup! | 10:48 |
| wiking | okey | 10:49 |
| wiking | and what do you have in that directory? | 10:49 |
| wiking | can u please copy-paste it here? | 10:49 |
| erin_ | insttype.ini lcdata.xml lcdata.xsd lcdata_utf8.xml license.txt m3iregistry matlab.bat matlab.exe mex.bat mex.pl mexext.bat mexsetup.pm mexutils.pm registry util wi | 10:50 |
| wiking | mmm that's interesting | 10:50 |
| erin_ | win64 | 10:50 |
| wiking | ah so u have there win64 | 10:50 |
| wiking | right | 10:50 |
| wiking | ? | 10:50 |
| erin_ | yup! it has a win64 folder | 10:51 |
| wiking | great | 10:51 |
| wiking | then we just need to fix a little bit | 10:51 |
| wiking | and it might even work ;) | 10:51 |
| wiking | how does your ./configure line looks like now? | 10:51 |
| wiking | how do you call it? | 10:52 |
| erin_ | same as that of the installation page | 10:52 |
| erin_ | ./configure --interfaces=matlab_static | 10:52 |
| wiking | ok so there's actually seems like there's 2 problems | 10:54 |
| wiking | 1 how the matlab_dir is detected | 10:54 |
| wiking | 2) that it tries to use win32 instead win64 | 10:54 |
| wiking | the former we can fix quite fast | 10:54 |
| erin_ | that's great! meanwhile.. ill be trying it on win32 and update you | 10:55 |
| wiking | ok | 10:56 |
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| erin_ | wow i appreciate your prompt response on the matter... :) | 10:56 |
| wiking | no worries | 10:57 |
| wiking | hope that we can figure it out for you | 10:57 |
| wiking | my concern here rather the first problem | 10:57 |
| wiking | the detection of the path for matlab | 10:57 |
| erin_ | ok ill be back next time.. ill go first to my sort-of meeting... thanks again! | 10:57 |
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| wiking | lol ok | 10:58 |
| wiking | i was just about to ask u to do some stuff... ;) | 10:58 |
| wiking | i guess later | 10:58 |
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| nona642 | Hi everyone | 11:58 |
| nona642 | anybody works with weighted degree position string kernel before? | 11:58 |
| sonne|work | nona642: lets say yes ;) | 11:59 |
| Guest71666 | I have problems with setting shift_len | 12:02 |
| Guest71666 | I am sing R static and I assume if the degree is for example 20 shift_len has to be a vector of length 20 | 12:03 |
| sonne|work | could you be a bit more specific | 12:03 |
| * sonne|work lunch time | 12:03 | |
| Guest71666 | :) | 12:04 |
| Guest71666 | =;) | 12:21 |
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| Guest71666 | Have to go. | 13:17 |
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| sonne|work | Guest71666: yes exactly | 13:45 |
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| erin_ | @wiking and others as well, I tried installing shogun in win32 for matlab and still produce the same error | 14:24 |
| erin_ | Checking for Matlab developer support (-lmx -lmex -lmat) ... no Error: could not find matlab developer files (e.g. mex.h) Check configure.log if you do not understand why it failed. The last 20 lines of configure.log are shown below ########################################## ============ Checking for Matlab developer support (-lmx -lmex -lmat) ============ #include <mex.h> void mexFunction(int nlhs,mxArray *plhs[],int nrhs,const m | 14:24 |
| erin_ | void) { return 0; } cc -I. -I.. -fPIC -march=native -mtune=native -pthread ./configure-28774-7852.c -o ./configure-28247-7852.o -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/extern/include -shared -mno-cygwin -Wl,--version-script,mexFunction.map -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/bi | 14:25 |
| erin_ | apparently it also search at the wrong directory: Program Files/MATLAB/R2010a/bin/matlab.exe/bin/win32 | 14:26 |
| sonne|work | erin_: I no longer have access to matlab so I cannot really help here | 14:30 |
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| erin_ | wiking: i started to fix the configure file but still didn't work | 15:31 |
| erin_ | first, i change mat matlab dir to a direct path | 15:31 |
| erin_ | second, i changed matlab developer supper to libmx libmex and libmat....now this is the current look: | 15:33 |
| erin_ | cc -I. -I.. -fPIC -march=native -mtune=native -pthread ./configure-23895-6208.c -o ./configure-5220-6208.o -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script,mexFunction.map -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack -lblas | 15:33 |
| erin_ | has been removed; use a mingw-targeted cross-compiler. | 15:34 |
| wiking | erin_: yeah because you still need to change to win64... if u r trying to compile it for 64bit | 15:34 |
| erin_ | i am working it on the win32 now | 15:36 |
| erin_ | so it should be right :s | 15:36 |
| wiking | ah | 15:38 |
| wiking | then yeah | 15:38 |
| wiking | what is the error on this | 15:38 |
| erin_ | same, Checking for Matlab developer support (-libmx -libmex -libmat) ... no Error: could not find matlab developer files (e.g. mex.h) | 15:39 |
| erin_ | this is now the current command | 15:39 |
| erin_ | cc -I. -I.. -fPIC -march=native -mtune=native -pthread ./configure-23895-6208.c -o ./configure-5220-6208.o -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script,mexFunction.map -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack -lblas | 15:39 |
| wiking | mmm | 15:41 |
| wiking | erin_: extern/include/mex.h | 15:41 |
| wiking | don't u have this? | 15:41 |
| wiking | /cygdrive/c/Program Files/MATLAB/R2010a/extern/include/mex.h | 15:42 |
| wiking | there should be something like this | 15:42 |
| wiking | but i thiiiink your problem is that the path is not escaped | 15:42 |
| wiking | /cygdrive/c/Program Files/MATLAB/R2010a/extern/include should be | 15:42 |
| wiking | /cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include/mex.h | 15:42 |
| wiking | i mean: /cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include | 15:42 |
| erin_ | i do have it.. oh right! ill try now | 15:43 |
| erin_ | still same.. i'm also bothered with this error | 15:46 |
| erin_ | cc: The -mno-cygwin flag has been removed; use a mingw-targeted cross-compiler. | 15:46 |
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| erin_ | wiking, you are right about the path.. well, one of the problems.. basically I lowered the compiler version so the -mno-cygwin is not there anymore.. but now it has these | 16:42 |
| erin_ | cc -I. -I.. -fPIC -march=pentium3 -mtune=pentium3 -pthread ./configure-8745-4356.c -o ./configure-27005-4356.o -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script,mexFunction.map -Wl,--rpath-link,/cygdrive/c/Program\ Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program\ Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack | 16:42 |
| erin_ | ATLAB/R2010a/extern/include: No such file or directory cc: Files/MATLAB/R2010a/extern/lib/win32: No such file or directory cc: Files/MATLAB/R2010a/bin/win32: No such file or directory cc: unrecognized option `-pthread' cc: unrecognized option `-pthread' ./configure-8745-4356.c:1: warning: -fPIC ignored for target (all code is position independent) ./configure-8745-4356.c:1:17: mex.h: No such file or directory ./configure-8745-4356.c:2: | 16:42 |
| erin_ | Array" no object file created | 16:42 |
| erin_ | i can't seem to fix the path and I can't afford to move my Matlab to another directory.. anyway i am very tired... thanks for your help! | 16:44 |
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| n4nd0 | this whole workshop idea sounds awesome | 18:35 |
| blackburn | vodka party | 18:35 |
| n4nd0 | :D | 18:36 |
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| --- Log closed Sat Dec 15 00:00:38 2012 | ||
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