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| -shogungit:#shogun- [shogun] sonney2k pushed 2 new commits to master: https://github.com/shogun-toolbox/shogun/compare/8ebb42b4a6c4...5c8e2b102d53 | 14:07 | |
| -shogungit:#shogun- shogun/master 792f895 Soeren Sonnenburg: Improve speed of SG_*IO debug functions... | 14:07 | |
| -shogungit:#shogun- shogun/master 5c8e2b1 Soeren Sonnenburg: remove legacy whitespace in all SG_*IO functions... | 14:07 | |
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| n4nd0 | sonne|work: wow that was a large commit :) | 14:11 |
|---|---|---|
| n4nd0 | did you make an script for that or from vim directly? | 14:11 |
| n4nd0 | see you later | 14:18 |
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| -shogungit:#shogun- [shogun] behrj opened pull request #857: Fix static interface to dynamic program (master...master) https://github.com/shogun-toolbox/shogun/pull/857 | 18:19 | |
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| heiko | sonney2k, around? | 18:26 |
| heiko | had phd interviews over the last week - the reason why I was invisible. | 18:27 |
| heiko | I was just wondering about the call for proposals for the workshop, when should we send this out, what should be in there? | 18:28 |
| heiko | let me know what you think on this | 18:28 |
| @sonney2k | heiko, hey | 18:34 |
| heiko | hi | 18:34 |
| @sonney2k | heiko, gunnar is hiding from me so before I get hold of him I cannot do more | 18:35 |
| @sonney2k | heiko, btw I am just investigating evaluation_cross_validation_multiclass_mkl.cpp | 18:35 |
| blackburn | sonney2k: I am afraid that pull request is rather for you :( | 18:35 |
| @sonney2k | it fails with assertation < 0.9 accuracy | 18:35 |
| @sonney2k | blackburn, ? | 18:35 |
| heiko | sonney2k, yes I saw that | 18:35 |
| blackburn | sonney2k: https://github.com/shogun-toolbox/shogun/pull/857 | 18:36 |
| heiko | sonney2k, I am a bit confused since this used to work | 18:36 |
| @sonney2k | heiko, who did add this? does it make sense? | 18:36 |
| heiko | sonney2k, well just as a check that no nonsense is returned, I evaluated the accuracy, and then simply added this check which was a lower bound on the accuracy | 18:36 |
| heiko | so if it fails this means that something has changed | 18:36 |
| heiko | and this way, a few problems with the labels were detected | 18:37 |
| heiko | so I consider it quite useful, however, remove it if it doesnt make sense or something | 18:37 |
| @sonney2k | heiko, do you know what accuracy is possible w/ e.g. a 3 class mc svm? | 18:38 |
| @sonney2k | heiko, this example is rather advanced... mkl & multiclass and ... so hmmh | 18:39 |
| heiko | but the data is fixed right? | 18:39 |
| @sonney2k | heiko, it trains on the full data set and then does some stratified x-val again on this dataset giving out accuracy | 18:43 |
| heiko | I agree that through x-.validation, we cannot be sure what the accuacy is | 18:43 |
| heiko | however, in practice, it makes still sense to check for reasonable accuracy | 18:43 |
| heiko | But agreed that 0.9 is too large | 18:44 |
| heiko | I will change it to 0.7 or 0.6 | 18:44 |
| heiko | or even remove it | 18:44 |
| heiko | sonney2k, blackburn, on thing, in lapack.h, can I change line 31 to #include <atlas/cblas.h> ? Would that work on your systems? On mine, it does not compile otherwise | 18:47 |
| blackburn | heiko: it seems to be little wrong | 18:47 |
| blackburn | heiko: do you have -I/usr/include/atlas in your .config? | 18:48 |
| heiko | no | 18:49 |
| blackburn | but you have -DHAVE_ATLAS, right? | 18:49 |
| heiko | yes | 18:49 |
| blackburn | interesting | 18:50 |
| heiko | I will just create a link on my system then | 18:50 |
| blackburn | heiko: so that's ubuntu? | 18:51 |
| heiko | yep, any I haven't changed anything, it just stopped working a while ago | 18:51 |
| blackburn | heiko: did you re-configure recently? | 18:52 |
| heiko | yes | 18:52 |
| heiko | often | 18:52 |
| heiko | in fact just a minute ago | 18:52 |
| blackburn | sad | 18:53 |
| @sonney2k | heiko, no that is not what I meant - what accuracy is possible? | 18:53 |
| heiko | sonney2k, how do you mean that? | 18:53 |
| @sonney2k | heiko, if 0.9 is very well possible then this assertion is valid | 18:54 |
| @sonney2k | heiko, about your atlas issue... I have -I/usr/include/atlas in my .config. could you paste your configure.log? | 18:55 |
| heiko | sonney2k, I dont know, but I certainly would not have added this if I did not get these values. Cannot remember however, so I just changed it to 0.65 instead | 18:55 |
| heiko | sure | 18:55 |
| @sonney2k | heiko, well no then don't change it | 18:55 |
| heiko | sonney2k, there were problems with labels before, causing wrong x-validation results | 18:56 |
| @sonney2k | heiko, which test test for this? | 18:57 |
| @sonney2k | or how can we be sure that we don't have this issue again? | 18:57 |
| heiko | well, those accuracy assertions are a straight forward way to at least ensure that no nonsense comes out (assert that performance is better than random or similar) | 18:58 |
| heiko | but in general, we can only be sure if we finally start writing tests for our code ;) for which I was a bit overoptimistic regarding time to do this | 18:58 |
| @sonney2k | very true | 18:59 |
| heiko | any updates on the gtest framework btw? | 18:59 |
| blackburn | it is not the matter of framework I believe | 19:00 |
| @sonney2k | heiko, that is wiking's domain | 19:00 |
| heiko | I know, just wondering whether there was progress | 19:00 |
| @sonney2k | heiko, wiking was/is busy with real life stuff | 19:00 |
| heiko | sonney2k, here is my configure.log | 19:01 |
| heiko | http://pastebin.com/PKtumAuR | 19:01 |
| heiko | sonney2k, who isn't :) | 19:01 |
| heiko | I finally managed to have two jobs at once :D | 19:01 |
| @sonney2k | heiko, stupid you | 19:01 |
| @sonney2k | get rid of one | 19:01 |
| @sonney2k | there is no need to get a burn out before becoming 30 | 19:02 |
| blackburn | ooh two jobs nice | 19:02 |
| blackburn | hah heiko is near IIRC | 19:02 |
| heiko | sonney2k, in two months, and its two 50% ones, but you know how that is - at least I will get my name on some nice papers :) | 19:02 |
| heiko | sonney2k, no risk of burn out here, I am quite relaxed | 19:02 |
| heiko | take my time to rest etcetc | 19:03 |
| blackburn | I am dying with two areas I am trying to succeed | 19:03 |
| blackburn | :D | 19:03 |
| @sonney2k | heiko, your c++ compiler is weird | 19:06 |
| heiko | what going on? | 19:07 |
| @sonney2k | it shouldn't compile this test | 19:07 |
| heiko | no idea | 19:09 |
| heiko | what about the atlas issue ? | 19:10 |
| @sonney2k | that is your atlas issue | 19:10 |
| heiko | I see | 19:10 |
| heiko | mmh | 19:10 |
| heiko | so? | 19:10 |
| heiko | re-install ubuntu? :D | 19:10 |
| heiko | this is usually how I fix those thing | 19:11 |
| heiko | s | 19:11 |
| @sonney2k | lets try -Werror-implicit-function-declaration | 19:13 |
| heiko | where to add this best? | 19:14 |
| @sonney2k | heiko, sec | 19:18 |
| heiko | ok | 19:18 |
| @sonney2k | heiko, please pull and test | 19:23 |
| heiko | sonney2k, ok | 19:23 |
| heiko | give me a minute, just committing some other thinfs | 19:24 |
| @sonney2k | heiko, check if -I/usr/include/atlas appears in your .config | 19:24 |
| heiko | sonney2k, | 19:28 |
| heiko | cat .config | grep atlas | 19:28 |
| heiko | POSTLINKFLAGS= -lm -pthread -lhdf5 -ljson -lxml2 -llapack -lcblas -llapack_atlas -larpack -lglpk -lm -llzo2 -lz -lbz2 | 19:28 |
| heiko | from shogun/src | 19:28 |
| heiko | building from latest pull now | 19:28 |
| heiko | sonney2k, compiled just fine, you fixed it :) | 19:30 |
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| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4622592 | 19:30 |
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| @sonney2k | wiking, could you fix travis? | 19:31 |
| @sonney2k | it is giving weird erros | 19:31 |
| @sonney2k | and is useless currently | 19:31 |
| blackburn | I can | 19:32 |
| blackburn | uhm | 19:33 |
| blackburn | illegal instruction | 19:33 |
| blackburn | sonney2k: I'd expect we should turn off optimizations | 19:33 |
| @sonney2k | blackburn, so it is a bug in clang? | 19:37 |
| @sonney2k | in any case we should turn of optimzations for travis - speeds up compilation... | 19:38 |
| blackburn | sonney2k: it happen to me with -O4 once | 19:38 |
| blackburn | yes agree | 19:38 |
| @sonney2k | blackburn, I guess it is enough to edit .travis.yml? | 19:38 |
| blackburn | sonney2k: yes already done | 19:38 |
| @sonney2k | oops | 19:39 |
| @sonney2k | me too | 19:40 |
| blackburn | sonney2k: irc notify disappeared | 19:41 |
| blackburn | sonney2k: btw we could pull travis status to readme like in tapkee: https://github.com/lisitsyn/tapkee (line before Interface header) | 19:42 |
| @sonney2k | I don't understand why thogh | 19:42 |
| shogun-buildbot | build #178 of rpm1 - libshogun is complete: Failure [failed test] Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/178 blamelist: Soeren Sonnenburg <sonne@debian.org> | 19:44 |
| blackburn | sonney2k: what would you say if I said I want to CMake shogun totally? | 19:45 |
| @sonney2k | blackburn, I would say you have too much spare time | 19:46 |
| blackburn | true | 19:46 |
| blackburn | but it would be nice still | 19:47 |
| blackburn | sonney2k: ah yes, we need gsoc meeting | 19:47 |
| @sonney2k | question is do we want to participate this year? | 19:49 |
| @sonney2k | there hasn't been a lot of activity here ... | 19:49 |
| blackburn | sonney2k: whoa? | 19:50 |
| blackburn | activity like? | 19:51 |
| @sonney2k | blackburn, well if we don't have the time to get the build green how can we mentor students *and* keep the build green? | 19:51 |
| blackburn | sonney2k: I can get time to manage students | 19:52 |
| blackburn | winter is tough (and it was tough twice IIRC) | 19:53 |
| blackburn | it is not a question for me - gsoc-boosted we can keep doing some changes | 19:54 |
| @sonney2k | blackburn, would you do the gsoc admin this year then? | 20:00 |
| blackburn | sonney2k: sure | 20:01 |
| blackburn | if you don't have time I'll back you up | 20:01 |
| @sonney2k | blackburn, I mean we should not rely on me this year | 20:01 |
| shogun-buildbot | build #179 of rpm1 - libshogun is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/179 | 20:01 |
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| @sonney2k | blackburn, no idea - irc notifications just don't want to work | 20:18 |
| blackburn | sonney2k: github. | 20:18 |
| blackburn | :D | 20:18 |
| @sonney2k | blackburn, if you want gsoc - start creating a list now and invite everyone to a meeting | 20:18 |
| @sonney2k | announce it on the mailinglist etc | 20:18 |
| @sonney2k | you know the drill :D | 20:18 |
| blackburn | sonney2k: yes once gsoc is announced | 20:18 |
| blackburn | sonney2k: but I'd need contacts of all possible mentors | 20:19 |
| @sonney2k | blackburn, no *before* gsoc is announced | 20:20 |
| blackburn | why before? | 20:20 |
| @sonney2k | very important to do everything before | 20:20 |
| blackburn | how can I announce we are participating in something that is not announced yet? | 20:20 |
| @sonney2k | blackburn, don't announce that we participate but that we want to and are looking for mentors/subjects | 20:21 |
| blackburn | ah that's ok | 20:21 |
| blackburn | I'll write an mail tomorrow's morning | 20:21 |
| blackburn | sonney2k: you settled some mentors at summit, right? | 20:22 |
| blackburn | well, possibilities | 20:22 |
| @sonney2k | yes | 20:29 |
| blackburn | sonney2k: I'd need contacts or mail to them from you | 20:30 |
| @sonney2k | blackburn, no | 20:30 |
| blackburn | no what? | 20:30 |
| @sonney2k | first discuss on the mailinglist | 20:30 |
| @sonney2k | this has time | 20:31 |
| blackburn | yes - but then someone should ask they if deal is here still | 20:31 |
| @sonney2k | yes later | 20:31 |
| blackburn | sonney2k: do you know anything on compressive sensing? | 20:32 |
| @sonney2k | no | 20:32 |
| blackburn | just about - I read some blog on that by igor carron | 20:33 |
| blackburn | I'll ask him in person if he can guide in compressive sensing | 20:33 |
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| shogun-notifier- | shogun: Soeren Sonnenburg :master * 4791238 / src/shogun/ (5 files): https://github.com/shogun-toolbox/shogun/commit/4791238c1617776a7add5339a6b00f5c6b076072 | 21:10 |
| shogun-notifier- | shogun: Fix a couple of clang compiler warnings. | 21:10 |
| shogun-notifier- | shogun: Soeren Sonnenburg :master * ad53e41 / src/configure: https://github.com/shogun-toolbox/shogun/commit/ad53e41509b3b2641ba25c5c4eb3d23c842ab4d2 | 21:10 |
| shogun-notifier- | shogun: enable more strict compiler settings | 21:10 |
| shogun-notifier- | shogun: Sergey Lisitsyn :master * 61197e6 / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/61197e6018fe278bfae1b103c8494903f850b80b | 21:10 |
| shogun-notifier- | shogun: Disabled optimizations in travis | 21:10 |
| shogun-notifier- | shogun: Soeren Sonnenburg :master * 397f027 / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/397f02747e5665e68a00be15858f60312953b3fb | 21:16 |
| shogun-notifier- | shogun: really disable optimizations in travis | 21:16 |
| @sonney2k | blackburn, have you seen this /usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/cstring:101:3: error: declaration conflicts with target of using declaration already in scope | 21:19 |
| @sonney2k | ? | 21:19 |
| blackburn | sonney2k: no, where? | 21:20 |
| blackburn | sonney2k: ah wait I have seen that | 21:21 |
| @sonney2k | when compiling with clang | 21:21 |
| blackburn | sonney2k: we had user reporting about that | 21:23 |
| shogun-notifier- | shogun: Soeren Sonnenburg :master * 37d4736 / src/interfaces/python_modular/protocols_helper.i: https://github.com/shogun-toolbox/shogun/commit/37d473621e388d64e0abd8ae0064cd49283b64e6 | 21:24 |
| shogun-notifier- | shogun: remove cstring include to hopefully fix clang compile error | 21:24 |
| blackburn | yes it fixes the error | 21:24 |
| @sonney2k | blackburn, why is it not committed then? | 21:24 |
| @sonney2k | until now I mean... | 21:24 |
| blackburn | sonney2k: I didn't manage to reproduce that | 21:24 |
| @sonney2k | just compile with clang | 21:25 |
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| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4625457 | 21:25 |
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| blackburn | it compiles with clang on my machine | 21:25 |
| shogun-notifier- | shogun: Soeren Sonnenburg :master * b2e2b30 / src/shogun/multiclass/LaRank.cpp,src/shogun/multiclass/LaRank.h: https://github.com/shogun-toolbox/shogun/commit/b2e2b301eebfaed45cdcc7fa591f5b9599bfc4f1 | 21:26 |
| shogun-notifier- | shogun: fix some clang compile errors | 21:26 |
| blackburn | works on my machine certification programme | 21:26 |
| blackburn | sonney2k: we've got to reduce codebase | 21:31 |
| blackburn | sonney2k: and we should decide whether we are general ml or bioinformatics | 21:32 |
| blackburn | I actually would vote for bioinformatics - there are a lot of tools for other ML | 21:33 |
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| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4625650 | 21:36 |
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| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4625640 | 21:37 |
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| blackburn | ehm | 21:38 |
| shogun-notifier- | shogun: Sergey Lisitsyn :master * ff6d336 / src/shogun/lib/CoverTree.h: https://github.com/shogun-toolbox/shogun/commit/ff6d33624986decf4e085ed02418bf7fd8fbf7b7 | 21:46 |
| shogun-notifier- | shogun: Removed unused covertree | 21:46 |
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| travis-ci | [travis-ci] it's Sergey Lisitsyn's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4626210 | 21:50 |
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| shogun-buildbot | build #782 of deb1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/782 blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com> | 22:09 |
| shogun-notifier- | shogun: Sergey Lisitsyn :master * 48e3489 / src/shogun/lib/FibonacciHeap.cpp,src/shogun/lib/FibonacciHeap.h: https://github.com/shogun-toolbox/shogun/commit/48e3489656524eaa7689af5dc34492922167dfab | 22:16 |
| shogun-notifier- | shogun: Removed duplicate of fibonacci heap | 22:16 |
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| travis-ci | [travis-ci] it's Sergey Lisitsyn's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4626876 | 22:21 |
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| shogun-buildbot | build #783 of deb1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/783 blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com> | 22:21 |
| blackburn | whoops | 22:22 |
| blackburn | keep calm sonney | 22:22 |
| blackburn | sunny! yesterday my life was filled with rain | 22:22 |
| shogun-notifier- | shogun: Sergey Lisitsyn :master * 18666b1 / src/shogun/ (4 files): https://github.com/shogun-toolbox/shogun/commit/18666b1527465efdd4292b93f0e21a9ccd5e26cc | 22:26 |
| shogun-notifier- | shogun: Removed unused arpack wrapper and removed unused covertree import | 22:26 |
| shogun-buildbot | build #784 of deb1 - libshogun is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/784 | 22:31 |
| blackburn | shogun-buildbot: good job soldier | 22:33 |
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| travis-ci | [travis-ci] it's Sergey Lisitsyn's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/4627176 | 22:41 |
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| --- Log closed Thu Feb 07 00:00:41 2013 | ||
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