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@sonney2k | wiking, that would mean we always have merge conflicts in the file and this file would be committed on every attempt | 05:09 |
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sonne|work | wiking: heyja I have an idea how to get rid of the version.h file :-) | 09:05 |
sonne|work | we just do everything on-the-fly with defines on the cmdline! | 09:06 |
sonne|work | wiking: then we could use the scheme we want :D | 09:06 |
sonne|work | and for releases we just rely on proper tagging - i.e. 2.1 with time from NEWS | 09:09 |
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wiking | :D | 10:02 |
wiking | sonne|work: interesting idea | 10:02 |
wiking | sonne|work: but i'm sure many opensource project has already solved this somehow | 10:02 |
sonne|work | wiking: then please point me to anyone who solved this | 10:03 |
sonne|work | blackburn: I had this idea how we could use git flow | 10:04 |
sonne|work | blackburn: we would drop the lib/versionstring.h thing | 10:05 |
sonne|work | and create things on the file (if .git dir exists) | 10:05 |
sonne|work | and otherwise take the version info from NEWS file | 10:05 |
blackburn | sonne|work: yeah makes sense for me | 10:05 |
sonne|work | blackburn: so we would need to add lots of stuff to $DEFINE (all on cmdline) instead of in a .h file | 10:07 |
sonne|work | the only trouble is that anyone using libshogun would not be able to figure out the version | 10:08 |
blackburn | let me check what is defined there | 10:08 |
sonne|work | because no such file would exist | 10:08 |
sonne|work | (which sucks) | 10:08 |
blackburn | sonne|work: so jsut extrac these defines from git? | 10:09 |
sonne|work | blackburn: well we do that with .version.sh | 10:09 |
sonne|work | ohh better | 10:09 |
sonne|work | we generate lib/versionstring.h always on the fly | 10:09 |
sonne|work | so we just need a small change to .version.sh | 10:09 |
blackburn | sonne|work: sounds good | 10:10 |
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sonne|work | blackburn: alright then we can follow https://github.com/diaspora/diaspora/wiki/Git-Workflow from now on | 10:15 |
sonne|work | ptizoom: zoom zoom! | 10:15 |
ptizoom | yep... still at ground NAN! | 10:15 |
ptizoom | is shogun-toolbox surviving? | 10:16 |
blackburn | ptizoom: interesting question | 10:17 |
ptizoom | well...I overlooked lots of # packages... | 10:18 |
ptizoom | ptizoom is a strange name, and not very flattering...but unique. never used by anyone since ~1998! | 10:22 |
blackburn | ptizoom: yeah I chose a name for my library using the same way | 10:23 |
ptizoom | (tm) | 10:25 |
wiking | sonne|work: yeah i'm just looking | 10:29 |
sonne|work | ptizoom: what does ptizoom stand for? | 10:30 |
wiking | sonne|work: btw why don't we just use the good old epoch.major.minor_revision format? | 10:34 |
sonne|work | wiking: we do | 10:35 |
sonne|work | shogun 2.1.0 | 10:35 |
wiking | sonne|work: in the header as well? | 10:35 |
ptizoom | klein zoom...! | 10:35 |
wiking | sonne|work: i see the MAINVERSION macro | 10:36 |
wiking | sonne|work: but we could switch to the usual slicing up it into different parts | 10:36 |
wiking | like most of the opensource project does it | 10:36 |
wiking | do we really need to know the git revision ? | 10:37 |
sonne|work | wiking: sure | 10:37 |
sonne|work | if someone reports an issue and has *some* git compiled version | 10:37 |
sonne|work | how do we know the version? | 10:37 |
wiking | you mean he would have a randomly checked out shogun version | 10:38 |
sonne|work | yes | 10:38 |
wiking | and then he wouldn't be able to tell us which rev he used from the repo? | 10:38 |
sonne|work | that's the most common way of using shogun I guess | 10:38 |
sonne|work | yeah | 10:38 |
wiking | i mean without the header | 10:38 |
wiking | since afaik if they have a random version | 10:39 |
wiking | then they checked out the git repo | 10:39 |
wiking | hence they can tell us which is the last git commit in their repo | 10:39 |
sonne|work | wiking: if they didn't update in the meantime and only have a single version lying around yes | 10:39 |
wiking | yes but i don't see it happening that somebody has *some* commit inbetween 2 releases, but he wouldn't be able to tell us his last commit w/o the version string | 10:40 |
wiking | i mean how did he get that source in the first place w/o checking out the repo | 10:40 |
sonne|work | wiking: I had that a lot | 10:40 |
wiking | sonne|work: using then versionstring.h.in ? | 10:44 |
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wiking | and generate versionstring.h from that with the help of ./configure | 10:44 |
sonne|work | wiking: I don't really understand what you are saying but we have a nice fix now so I guess that is good enough to no longer worry about this issue | 10:46 |
wiking | well the most common things that oss project do is simply have a .in file (you know the template file). i think that's the common format of autoconf | 10:47 |
wiking | and then just use that to generate with ./configure script the actual .h file | 10:48 |
wiking | pretty common stuff... | 10:48 |
sonne|work | wiking: that is what we do | 10:48 |
sonne|work | though not with .in but with a shell script | 10:48 |
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shogun-notifier- | shogun: Soeren Sonnenburg :master * 1e05037 / Makefile: https://github.com/shogun-toolbox/shogun/commit/1e05037e64cae1a2a247e64db8c5d316a1cccf34 | 19:06 |
shogun-notifier- | shogun: fix release script | 19:06 |
shogun-notifier- | shogun: Soeren Sonnenburg :dev * 6ce4431 / src/ChangeLog: https://github.com/shogun-toolbox/shogun/commit/6ce44315fdc21bfee6876d006201530c3c28d885 | 19:06 |
shogun-notifier- | shogun: updated changelog | 19:06 |
shogun-notifier- | shogun: Soeren Sonnenburg :dev * 1b1130d / doc/Doxyfile: https://github.com/shogun-toolbox/shogun/commit/1b1130d2ca8f48e97737caa405ede519abe70253 | 19:06 |
shogun-notifier- | shogun: Preparing for new Release shogun_2.1.0 | 19:06 |
shogun-notifier- | shogun: Soeren Sonnenburg :dev * e6138dd / src/ChangeLog: https://github.com/shogun-toolbox/shogun/commit/e6138ddfb06ea1ad193a2a3c0f941a7bfadff26b | 19:06 |
shogun-notifier- | shogun: Preparing for new Release shogun_2.1.0 | 19:06 |
blackburn | sonney2k: release every day! | 19:12 |
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shogun-buildbot_ | build #364 of rpm1 - libshogun is complete: Failure [failed test] Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/364 blamelist: Soeren Sonnenburg <sonne@debian.org> | 20:23 |
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wiking | yeeey | 20:30 |
wiking | :) | 20:30 |
wiking | anybody around? | 20:30 |
blackburn | wiking: yes | 20:30 |
wiking | blackburn: so actually now with the version string changes, are we going for direct commit ?:) | 20:31 |
blackburn | wiking: I don't mind direct commit | 20:32 |
wiking | please let's do it! | 20:32 |
blackburn | wiking: I do direct commit anyway :D | 20:32 |
wiking | since if we really go forward with the git-flow-like dev mechanizm, we should not encounter merging problems | 20:32 |
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wiking | btw: fetching the upstream repo via 3g... isn't having the most optimal speed | 20:36 |
@sonney2k | alexlovesdata, hey | 20:36 |
wiking | blackburn: i've created a mini patch for ./configure | 20:36 |
alexlovesdata | int32_t num_samples=features->get_num_vectors(); | 20:36 |
alexlovesdata | SGMatrix<float64_t> outmatrix(dim_feature_space,num_samples); | 20:36 |
alexlovesdata | float64_t val = CMath::sqrt(2.0 / dim_feature_space); | 20:36 |
alexlovesdata | for (int32_t vecind = 0; vecind < num_samples; vecind++) | 20:36 |
alexlovesdata | { | 20:36 |
alexlovesdata | for (int32_t od = 0; od < dim_feature_space; ++od) | 20:36 |
alexlovesdata | { | 20:36 |
alexlovesdata | float64_t tmpval=randomcoeff_additive[od]+features->dense_dot (vecind, randomcoeff_multiplicative+od*dim_input_space, dim_input_space); | 20:36 |
alexlovesdata | outmatrix.matrix[od+dim_feature_space*vecind]=val*cos(tmpval); | 20:36 |
alexlovesdata | } | 20:36 |
alexlovesdata | } | 20:36 |
wiking | for jemalloc and tc malloc | 20:36 |
alexlovesdata | CDenseFeatures<float64_t> * result = new CDenseFeatures<float64_t>(outmatrix); | 20:36 |
wiking | lol face :D | 20:36 |
blackburn | uh that's a rude hello | 20:37 |
wiking | so yeah i have a tcmalloc,jemalloc patch for shogun.. | 20:37 |
wiking | interested? | 20:37 |
blackburn | wiking: I don't give a what tcmalloc is :) | 20:37 |
wiking | basically a faster heap manager library than the default glibc | 20:37 |
wiking | as well as both support heap profiling | 20:37 |
wiking | and heap checking | 20:37 |
wiking | -> leak checking | 20:37 |
wiking | blackburn: https://www.facebook.com/notes/facebook-engineering/scalable-memory-allocation-using-jemalloc/480222803919 | 20:38 |
wiking | both are developed by the big boyz | 20:38 |
alexlovesdata | code spam-in :P | 20:38 |
wiking | jemalloc = facebook; tcmalloc = google | 20:38 |
blackburn | wiking: with proper define would be nice | 20:38 |
wiking | blackburn: ? | 20:39 |
blackburn | wiking: not the default thing I mean | 20:39 |
wiking | yeah | 20:39 |
wiking | it's a configure flag | 20:39 |
wiking | and by default it's disabled | 20:39 |
blackburn | wiking: is it possible to change default allocator for everything? | 20:40 |
blackburn | I don't know a way but may be you know | 20:40 |
wiking | as it's a drop-in malloc replacement library, it doesn't need any extra stuff just to link with the given library | 20:40 |
wiking | even LD_PRELOAD should work.... | 20:40 |
wiking | according to tcmalloc you just do LD_PRELOAD | 20:40 |
blackburn | wiking: just link? | 20:40 |
wiking | and the malloc calls are going to be overriden | 20:40 |
wiking | *overridden | 20:40 |
wiking | blackburn: yep... so when linking the shogun lib: -ltcmalloc | 20:41 |
wiking | and that's all | 20:41 |
blackburn | wiking: I am curious if there is a speedup | 20:41 |
wiking | yeah i didn't manage to test that | 20:41 |
wiking | i've created tcmalloc replacement yesterday night | 20:41 |
wiking | but then it came out that it's buggy under 10.8 osx | 20:41 |
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wiking | so i quickly written the jemalloc support as well | 20:42 |
wiking | as that works fine | 20:42 |
wiking | but didn't have time for debugging | 20:42 |
wiking | but since i've created we might as well put it in | 20:42 |
wiking | as maaaybe somebody would like to play with it | 20:42 |
wiking | and then if somebody has time to test it.... | 20:42 |
wiking | i mean it shoudl be fairly easy to check this | 20:42 |
wiking | the bsd1 bot uses jemalloc fork by default (freebsd's malloc library isn't based on glibc) | 20:43 |
wiking | so we could check there running times for the examples | 20:43 |
blackburn | wiking: any package in ubuntu? | 20:43 |
wiking | blackburn: dunno just a sec | 20:43 |
wiking | libtcmalloc-minimal0 - an efficient thread-caching malloc | 20:43 |
wiking | libtcmalloc-minimal0-dbg - an efficient thread-caching malloc | 20:43 |
wiking | libjemalloc-dev - development files and documentation for jemalloc | 20:44 |
wiking | libjemalloc1 - general-purpose scalable concurrent malloc(3) implementation | 20:44 |
wiking | so yes | 20:44 |
wiking | ;) | 20:44 |
blackburn | let me try it with tapkee | 20:44 |
wiking | both are in | 20:44 |
blackburn | I am curious | 20:44 |
wiking | blackburn: LD_PRELOAD it | 20:44 |
blackburn | wiking: I feel stupid - what does it mean? | 20:44 |
wiking | e.g. LD_PRELOAD="/usr/lib/libtcmalloc.so" | 20:45 |
blackburn | wiking: and run app? | 20:45 |
wiking | LD_PRELOAD="/usr/lib/libtcmalloc.so" ./example | 20:45 |
blackburn | wiking: no need for any linking you mean? | 20:45 |
wiking | yes | 20:45 |
wiking | blackburn: shoudl work w/o anything | 20:45 |
wiking | they don't recommend this mode | 20:45 |
wiking | but should work | 20:45 |
wiking | as it really overrides the *malloc() functions | 20:45 |
wiking | and as it preloads that lib | 20:46 |
wiking | anybody who calls *malloc will end up calling tcmalloc's functions | 20:46 |
wiking | but yeah otherwise just append a -ltcmalloc to your linking flags | 20:46 |
blackburn | wiking: no significant speedup on a toy example | 20:46 |
wiking | btw: do you have memory heavy examples? | 20:47 |
wiking | :D | 20:47 |
blackburn | wiking: probably I do not malloc often | 20:47 |
wiking | yep | 20:47 |
blackburn | wiking: no, but I was curious still | 20:47 |
wiking | hehehe | 20:47 |
wiking | blackburn: http://goog-perftools.sourceforge.net/doc/tcmalloc.html | 20:47 |
blackburn | wiking: with -O3 it could avoid any mallocs at all hah | 20:47 |
wiking | see the graphs on the bottom of the page | 20:47 |
blackburn | wiking: it is a good thing for servers I guess | 20:47 |
wiking | mmm well anything that needs to be scalled ;) | 20:48 |
wiking | *scaled :) | 20:48 |
wiking | anyhow it's not only this | 20:48 |
wiking | heap-profiling is really handy as well | 20:48 |
wiking | but with the tcmalloc package in ubuntu you cannot do it | 20:49 |
wiking | as it is the _minimal version | 20:49 |
wiking | that doesn't have any profiling support | 20:49 |
blackburn | wiking: I see | 20:49 |
wiking | heiko ? or he gut exhausted from the bughunt... ? :S | 20:49 |
@sonney2k | alexlovesdata, http://www.shogun-toolbox.org/doc/en/current/classshogun_1_1CDotFeatures.html | 20:50 |
blackburn | wiking: btw I solved gtest issue | 20:54 |
wiking | blackburn: u had one? :) | 20:54 |
blackburn | wiking: well yes | 20:54 |
wiking | aaah | 20:54 |
wiking | with tapkee u mean/ | 20:54 |
blackburn | https://github.com/lisitsyn/tapkee/blob/master/CMakeLists.txt | 20:54 |
wiking | ? | 20:55 |
blackburn | yes | 20:55 |
wiking | remember... | 20:55 |
blackburn | wiking: I am playing with tapkee to learn new things :D | 20:55 |
blackburn | (mostly) | 20:55 |
wiking | cool cool | 20:55 |
wiking | shiiiit | 20:56 |
wiking | the clang-analyzer output is really getting huge | 20:56 |
wiking | it's 3gigs now | 20:56 |
wiking | and only having february as tar.bz2 | 20:56 |
blackburn | wiking: I failed to set up analyzer and tapkee :D | 20:56 |
wiking | and march non archived | 20:56 |
blackburn | no output at all.. | 20:56 |
wiking | mmm | 20:56 |
wiking | interesting | 20:56 |
blackburn | wiking: and about t-SNE | 20:57 |
blackburn | wiking: it is ready and I even play with it but I still wait for laurens | 20:57 |
blackburn | he said he don't mind gpling but disappeared then | 20:57 |
blackburn | it would be faster to write it once again hah | 20:57 |
wiking | :S | 20:58 |
wiking | wtf. freebsd has clang but i cannot find scan-build | 20:58 |
blackburn | wiking: so for shogun no tricks with scan-build were made? | 20:59 |
wiking | no not really | 21:00 |
wiking | the basic commands that are in the examples | 21:00 |
wiking | but i guess it's a bit different with cmake | 21:00 |
blackburn | wiking: well I tried with exact g++ calling command | 21:01 |
blackburn | got nothing again | 21:01 |
wiking | btw i think the scan-build in ubuntu lts is still not the best | 21:01 |
wiking | as it reports a lot of stupid things.... | 21:01 |
wiking | as if it doesn't fail on assertation errors | 21:01 |
blackburn | I should update my system | 21:01 |
wiking | like this one | 21:02 |
wiking | http://categorizer.tmit.bme.hu/~wiking/shogun.sa/2013-03-18-1/report-B6vpaU.html#EndPath | 21:02 |
wiking | i dont understand why is it not realising tht there's and assert on rn1 | 21:02 |
wiking | and this doesn't appear on my scan-build of shogun | 21:03 |
wiking | that one realises that actually the assert catches the null pointer dereferencing | 21:03 |
blackburn | heh | 21:04 |
@sonney2k | blackburn, look google is accepting applications now! | 21:10 |
alexlovesdata | wiking,blackburn: I did not got what you talked :D , I will log off, have a nice evening | 21:11 |
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blackburn | sonney2k: yeah application is improving, we will send it in time | 21:11 |
blackburn | sonney2k: it is ok to send a day before deadline right? | 21:11 |
blackburn | sonney2k: the application itself is quite easy but we have to detalize ideas | 21:13 |
wiking | blackburn: plz approve my request | 21:15 |
blackburn | wiking: sure | 21:15 |
wiking | thnx | 21:15 |
blackburn | wiking: I shared with wiking <at> maeth.com before | 21:15 |
wiking | yep unforunately it's not google accounted | 21:15 |
wiking | ;) | 21:15 |
blackburn | yeah | 21:16 |
@sonney2k | blackburn, no it is not easy and detailizing ideas is sth we should try hard now | 21:18 |
@sonney2k | blackburn, wiking I have another git flow blocker | 21:19 |
blackburn | sonney2k: detalizing ideas is much harder for me | 21:19 |
@sonney2k | we currenlty have DOXYGEN 's version also encoded in doc/Doxyfile | 21:19 |
wiking | sonney2k: listeninng.... it's almost as if u find cockblockers in shogun ;) | 21:19 |
@sonney2k | blackburn, well draft *1* now | 21:19 |
@sonney2k | blackburn, then ask all the mentors now | 21:20 |
blackburn | sonney2k: asked already | 21:20 |
wiking | sonney2k: you mean: PROJECT_NUMBER = v2.1.0 | 21:20 |
wiking | ? | 21:20 |
blackburn | sonney2k: twos | 21:20 |
@sonney2k | wiking, yes | 21:20 |
@sonney2k | blackburn, whom did you ask? | 21:20 |
wiking | sonney2k: that's easy to solve | 21:20 |
blackburn | sonney2k: igor and cheng | 21:20 |
wiking | sonney2k: that's a common way of having doxyfile.in | 21:21 |
wiking | sonney2k: this is how i solved this in another project of mine: http://git.xiph.org/?p=liboggplay.git;a=blob;f=doc/Doxyfile.in;h=fea318f77412097f06f52c1481eb6c6e3b678af5;hb=HEAD | 21:21 |
@sonney2k | wiking, so we generate Doxyfile from Doxygen.in ? | 21:21 |
wiking | sonney2k: yes | 21:22 |
@sonney2k | ok | 21:22 |
wiking | afaik versionstring.h.in should be done as well ;) | 21:24 |
wiking | s/afaik/imo/ | 21:24 |
wiking | but yeah i guess i told this already | 21:24 |
shogun-notifier- | shogun: Soeren Sonnenburg :master * d946b1d / doc/Makefile,doc/Doxyfile_cn.in,doc/Doxyfile_en.in: https://github.com/shogun-toolbox/shogun/commit/d946b1d4e5c0bee8155b93b852c2c45865bafac6 | 21:34 |
shogun-notifier- | shogun: always version doxygen files based on NEWS | 21:34 |
shogun-notifier- | shogun: Soeren Sonnenburg :master * 68f6a48 / Makefile,src/.version.sh,src/Makefile.template: https://github.com/shogun-toolbox/shogun/commit/68f6a48699bab5def2175eadf50565b7e4949b4f | 21:34 |
shogun-notifier- | shogun: autogenerate lib/versionstring.h based on NEWS file if no .git repo is available | 21:34 |
@sonney2k | blackburn, once you have a draft for one task on the website I would send it to the other usual suspects (olivier, quok, alex, vojtech, ...) | 21:35 |
blackburn | sonney2k: tomorrow's morning | 21:36 |
shogun-buildbot_ | build #1003 of deb1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/1003 blamelist: Soeren Sonnenburg <sonne@debian.org> | 21:38 |
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travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/5605594 | 21:39 |
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shogun-notifier- | shogun: Soeren Sonnenburg :master * a482789 / src/.version.sh: https://github.com/shogun-toolbox/shogun/commit/a482789c482309d061f41017e6fc6936a0257fcb | 22:05 |
shogun-notifier- | shogun: add 0xMMmmrr (MM==major mm==minor rr=release) to version | 22:05 |
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travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/5606700 | 22:15 |
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shogun-buildbot_ | build #1004 of deb1 - libshogun is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/1004 | 22:16 |
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shogun-buildbot_ | build #365 of rpm1 - libshogun is complete: Failure [failed test] Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/365 blamelist: Soeren Sonnenburg <sonne@debian.org> | 23:05 |
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--- Log closed Tue Mar 19 00:00:14 2013 |
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