IRC logs of #shogun for Sunday, 2013-08-25

« Saturday, 2013-08-24 Index Monday, 2013-08-26 »
--- Log opened Sun Aug 25 00:00:30 2013
shogun-buildbotbuild #1594 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/159400:06
shogun-buildbotbuild #976 of rpm1 - libshogun is complete: Failure [failed git]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/976  blamelist: Soeren Sonnenburg <sonne@debian.org>00:11
shogun-notifier-shogun: Soeren Sonnenburg :develop * 2e5dcd3 / src/shogun/structure/BeliefPropagation.cpp: https://github.com/shogun-toolbox/shogun/commit/2e5dcd3911de60f81f4551eae83eca4a6468774600:16
shogun-notifier-shogun: attempt compile fix on cygwin00:16
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shogun-buildbotbuild #39 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/39  blamelist: Soeren Sonnenburg <sonne@debian.org>01:10
shogun-buildbotbuild #1511 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1511  blamelist: Soeren Sonnenburg <sonne@debian.org>01:11
shogun-buildbotbuild #977 of rpm1 - libshogun is complete: Failure [failed git]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/977  blamelist: Soeren Sonnenburg <sonne@debian.org>01:46
shogun-buildbotbuild #1301 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1301  blamelist: Soeren Sonnenburg <sonne@debian.org>01:49
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shogun-notifier-shogun: Viktor Gal :develop * 89c9777 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/89c97770a300cd9c7a9d7514024461989aa6fc9a11:59
shogun-notifier-shogun: Add cmdline_static examples and missing matlab_static cmake11:59
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shogun-notifier-shogun: Viktor Gal :develop * 08a2596 / src/shogun/base/class_list.cpp.py: https://github.com/shogun-toolbox/shogun/commit/08a2596b1d29ffcd96e522298ad64859411076af12:24
shogun-notifier-shogun: Small refactoring of class_list.cpp generator script12:24
shogun-notifier-shogun: Use python functions instead of UNIX commands12:24
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shogun-buildbotbuild #1482 of deb2 - static_interfaces is complete: Failure [failed test cmdline_static]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb2%20-%20static_interfaces/builds/1482  blamelist: Viktor Gal <viktor.gal@maeth.com>12:31
shogun-buildbotbuild #40 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/40  blamelist: Viktor Gal <viktor.gal@maeth.com>12:32
shogun-buildbotbuild #1512 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1512  blamelist: Viktor Gal <viktor.gal@maeth.com>12:32
shogun-buildbotbuild #978 of rpm1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/97812:46
shogun-buildbotbuild #41 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/41  blamelist: Viktor Gal <viktor.gal@maeth.com>12:54
shogun-buildbotbuild #1513 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1513  blamelist: Viktor Gal <viktor.gal@maeth.com>12:54
shogun-buildbotbuild #1302 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1302  blamelist: Viktor Gal <viktor.gal@maeth.com>13:11
shogun-buildbotbuild #1483 of deb2 - static_interfaces is complete: Failure [failed test cmdline_static]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb2%20-%20static_interfaces/builds/1483  blamelist: Viktor Gal <viktor.gal@maeth.com>13:24
shogun-notifier-shogun: Viktor Gal :develop * 794b873 / src/interfaces/cmdline_static/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/794b873c2c2d665681f2646e000c51f5941553e513:31
shogun-notifier-shogun: Fix cmdline_static exec path13:31
shogun-buildbotbuild #1303 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1303  blamelist: Viktor Gal <viktor.gal@maeth.com>13:53
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@iglesiasgwiking, lisitsyn ping14:07
@wikingpong14:07
@wikingiglesiasg: re14:07
@iglesiasgwiking, about the ipython-notebooks, I remember it was mentioned something about hosting them somewhere14:07
@iglesiasgwiking, are the news regarding that?14:08
@iglesiasgare there*14:08
@iglesiasgI mean if we are hosting them somewhere14:08
@wikingiglesiasg: sonne|osx would know about this more14:09
@iglesiasgwiking, all right, thanks!14:09
@iglesiasgsonney2k, let me know if so ;)14:10
@wikingokey this commit is going to b funny ;)14:24
shogun-notifier-shogun: Viktor Gal :develop * 9645b2c / / (5 files): https://github.com/shogun-toolbox/shogun/commit/9645b2c46e5a35543c11723b4023c6bb64452be614:26
shogun-notifier-shogun: Initial MSVC compilation support of shogun14:26
shogun-notifier-shogun: "640K of memory should be enough for anybody."14:26
@wikingso maaaybe the post-shogun release is going to be native windows ready ;)14:26
shogun-buildbotbuild #42 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/42  blamelist: Viktor Gal <viktor.gal@maeth.com>14:27
shogun-buildbotbuild #1514 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1514  blamelist: Viktor Gal <viktor.gal@maeth.com>14:27
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shogun-buildbotbuild #1484 of deb2 - static_interfaces is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb2%20-%20static_interfaces/builds/148414:57
@HeikoShi all!14:57
@wikingyo14:58
@HeikoSwiking: yo!14:58
@HeikoSwiking: here for some shogun hacking :)14:58
@HeikoSwhats currently important?14:58
@wikingHeikoS: mm i totally forgot what we should do with that SerialUTests branch15:00
@HeikoSwiking: so all tests apart from serialization are wokring?15:00
@wikingthe other important part is thread-safe add_substack15:00
@HeikoSwiking: ah yes, ok15:00
@HeikoSwiking: but the testing should be done first right? since we already started15:00
@HeikoSill build it and see15:01
@wikingi think it's failing big time :P15:01
@HeikoSwhat if the serialization is taken out, what happens?15:02
shogun-buildbotbuild #1304 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1304  blamelist: Viktor Gal <viktor.gal@maeth.com>15:05
@iglesiasgwiking, btw, how is it going with the workshop videos? Do you want some help getting that done?15:11
@HeikoSwiking, iglesiasg what do you think if we modularize the source a bit15:20
@HeikoSso that one does not have to compile everythin15:20
@iglesiasgHeikoS, I like that idea very much15:20
@HeikoSbut only things that depend on the stuff on wants15:21
@iglesiasgHeikoS, it was one of the reasong why I thought it would be interesting to introduce cmake15:21
@HeikoSiglesiasg: yea15:21
@HeikoStakes so long to compile everything currently15:21
@iglesiasgHeikoS, apart from cmake hacking, I guess it would require some refactoring15:21
@HeikoSiglesiasg: just wonderung whether its a good idea15:22
@iglesiasglike setting clear the boundaries between the modules, which ones are required by others and so on15:22
@HeikoSwhether it really helps15:22
@HeikoSiglesiasg: but it should be possible to infer that from the includes shouldnt it?15:22
@iglesiasgHeikoS, I think it should be possible, yes15:23
@HeikoSso say I only want GPs15:23
@HeikoSfor that, many parts are not really needed15:23
@HeikoSbut how to group15:23
@HeikoSwhat are the modules?15:23
@HeikoSmaybe if one specifies a list of classes that one wants?15:23
@HeikoSand then all dependencies are built15:24
@iglesiasga first approach could be simply the directories we use15:24
@HeikoSiglesiasg: is that going to work?15:24
@HeikoSmost things for example depend on machine15:24
@HeikoSbut compiling all machines is already too much15:24
@HeikoSand most things have at least one dependecy in most directory15:24
@iglesiasgthat's a good point15:24
@HeikoSdrectories15:24
@HeikoSwiking: I just realised you use the clone_unittests file to generate the serial tests in another dir15:26
@HeikoSI think this should be moved to a seperate directory?15:27
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@wikingHeikoS: ?15:33
@wikingHeikoS: these files are generated under ./build/...15:33
@wikingso really... they should not matter... and how they are generetaed that's defined in cmake15:33
@HeikoSwiking: the python script that generates the file from a template15:33
@HeikoSis in base15:34
@HeikoSiglesiasg:15:37
@HeikoS[  FAILED  ] BeliefPropagation.tree_max_product_string15:37
@HeikoS[  FAILED  ] 10 tests, listed below:15:37
@HeikoS[  FAILED  ] BeliefPropagation.tree_max_product_string15:37
@HeikoS[  FAILED  ] BeliefPropagation.tree_max_product_random15:37
@HeikoS[  FAILED  ] FactorGraph.compute_energies_data_indep15:37
@HeikoS[  FAILED  ] FactorGraph.evaluate_energy_data_indep15:37
@HeikoS[  FAILED  ] FactorGraph.evaluate_energy_data_dep15:38
@HeikoS[  FAILED  ] FactorGraph.evaluate_energy_param_data15:38
@HeikoS[  FAILED  ] FactorGraph.structure_analysis15:38
@HeikoS[  FAILED  ] FactorGraph.structure_analysis_loopy15:38
@HeikoS[  FAILED  ] FactorGraph.structure_analysis_disconnected15:38
@iglesiasgfacepalm...15:38
@iglesiasgHeikoS, I am almost sure that when I merged it, it was fine in travis15:38
@iglesiasgHeikoS, is that locally in your machine?15:39
@HeikoSiglesiasg: its our fork from a few days ago15:39
@HeikoSchecking further15:39
@iglesiasgHeikoS, ok15:39
@HeikoSiglesiasg: could you also tell shell to use an init() function to initialise parameters15:39
@HeikoSand not do this via the init lists in constructor15:40
@HeikoSredundant code and forgotten parameters15:40
@iglesiasgok15:40
@HeikoSI have fixed 100s of those in the last wekk15:40
@iglesiasgHeikoS, he normally uses register_params or something called like that instead of init15:40
@HeikoSjust init in register_parameters15:40
@HeikoSiglesiasg: yes but one also has to make sure that things are initialised15:40
@HeikoSotherwise memory errors15:40
@HeikoSwiking: ok all tests apart from serialization work now15:41
@iglesiasgHeikoS, ok, I understand. Thanks!15:41
@HeikoSwiking: should we merge the thing without the serialization tests for now?15:41
@iglesiasgHeikoS, but where is that failing anyway?15:41
@HeikoSiglesiasg: clone unit tests15:41
@HeikoSand produces random errors15:41
@iglesiasgdamn it15:41
@HeikoSsegfaults, worst case error ;)15:41
@iglesiasgI will tell Shell and try to have a look once I am done with the notebook I am doing at the moment15:42
@HeikoSiglesiasg: I fixed a few for now, its just better practice in general to use an init method rather than the init -lists in the constructor in order to avoid double code when there are mutliple constructors15:44
@HeikoSwith default values15:44
@HeikoSjust initialise in register_parameters15:44
@HeikoSthis is the best place since once doesnt forget things15:44
@iglesiasgHeikoS, absolutely, it makes total sense15:45
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shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 5e4d0a0 / src/shogun/structure/DisjointSet.cpp: https://github.com/shogun-toolbox/shogun/commit/5e4d0a0011a79be708e923626775272e4fdc784115:45
shogun-notifier-shogun: fixed uninitialised memory error15:45
shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 385bdd8 / tests/unit/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/385bdd852c5decc03ace7156973130558ce5477515:45
shogun-notifier-shogun: commented out serialization unit-tests for now15:45
@iglesiasgHeikoS, I do it like this in my classes https://github.com/shogun-toolbox/shogun/blob/develop/src/shogun/metric/LMNN.cpp#L24215:46
@HeikoSiglesiasg: do you know how I can see the travis build for this one?15:46
@HeikoSiglesiasg: yep thats the way to go :)15:46
@iglesiasgHeikoS, all right. For which one?15:46
@iglesiasgthe travis build15:46
@HeikoSsee above15:46
@HeikoSthe merge I just did in a feature branch15:46
@iglesiasgHeikoS, https://travis-ci.org/shogun-toolbox/shogun15:47
@iglesiasgI think it is that one15:48
@HeikoSah cool the sizte just shows all branches15:48
@iglesiasgthat URL show last build I think15:48
@iglesiasgbuild history for the whole list15:48
@HeikoSiglesiasg: also do you know the best practice to merge a feature branch?15:48
@HeikoSdo I do this locally on my machine in develop and then send a PR?15:48
@iglesiasgHeikoS, I normally send pull requests from the feature branch using github15:49
shogun-buildbotbuild #43 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/43  blamelist: Viktor Gal <viktor.gal@maeth.com>15:49
@HeikoSok15:49
@HeikoSiglesiasg: from your local copy?15:49
shogun-notifier-shogun: Sergey Lisitsyn :master * f8dba51 / src/shogun/lib/tapkee/tapkee_defines.hpp,src/shogun/mathematics/eigen3.h: https://github.com/shogun-toolbox/shogun/commit/f8dba512516a336baf9b1369949443b8b4cea3d615:49
shogun-notifier-shogun: Fixed minimal version of Eigen3 that supports sparse matrices15:49
@iglesiasgHeikoS, I keep my develop synced with upstream develop and try not to add anything there15:49
@HeikoSok15:50
shogun-buildbotbuild #1515 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1515  blamelist: Viktor Gal <viktor.gal@maeth.com>15:50
@iglesiasgHeikoS, yes, issue the pull request from my fork, using the desired feature branch15:50
@iglesiasgthere is this nice green button that makes that automatically15:50
@iglesiasgwhen you push to your fork15:51
lisitsynehm15:51
@HeikoSok15:51
lisitsyn:D15:51
@iglesiasgyou open in github the page for the branch15:51
lisitsynwtf15:51
@HeikoSjust wondering because I pushed to the feature branch directly15:51
@HeikoSso its not even in my fork15:51
@iglesiasgand there is a button that compares the changes with that branch with upstream develop and allows you to make the PR15:51
@iglesiasgHeikoS, maybe you can fetch it and push it to your fork15:52
@HeikoSyes thats what I will do15:52
@HeikoSlisitsyn: ?15:52
@iglesiasglisitsyn, what is it? :)15:52
lisitsynHeikoS: my commit :D15:52
@HeikoSah :)15:52
lisitsynhow does it happen15:52
@HeikoSlisitsyn: what do you want to send to the NIPS workshop?15:52
lisitsynHeikoS: my photos15:53
lisitsynHeikoS: :)15:53
@HeikoShaha15:53
@HeikoSok15:53
lisitsynHeikoS: well your photos ok15:54
lisitsyn;)15:54
lisitsynHeikoS: okay seriously I have no idea15:54
lisitsynwe should talk to cheng may be15:54
@HeikoSlisitsyn: yes we should, but with an idea :)15:55
@HeikoSso its about integrating multiple ML methods15:55
lisitsynHeikoS: I mean I don't know what they expect15:55
@HeikoSwhere is the page again?15:56
lisitsynHeikoS: http://mloss.org/workshop/nips13/15:57
@HeikoSok so its all about integrating multiple things to one another15:58
@HeikoSwow fernando perez is there15:58
@HeikoSipython and opencv15:58
@HeikoSI definitely wanna go :)15:58
@HeikoSsoftware packages can be submited15:58
@HeikoSwe have all the new file readers/writers15:59
@HeikoSwe have ipython integration in examples15:59
@HeikoSwe have included many opensource libs15:59
@HeikoSthat should be enough15:59
@HeikoSI already have a few examples in my head15:59
@HeikoSlike comparison of different svm libs15:59
@HeikoStapkee integration maybe15:59
@HeikoSfor preprocessing15:59
@HeikoSwe should do this!15:59
@HeikoSdeadline is oct 916:00
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lisitsynHeikoS: yeah for sure16:02
@wikingHeikoS: dude what are u doing?16:18
@wikinghttps://github.com/shogun-toolbox/shogun/pull/145716:18
@HeikoS?16:18
shogun-buildbotbuild #1878 of deb1 - libshogun is complete: Failure [failed configure]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/1878  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>16:18
@wikingplz dont do this16:18
@HeikoSwhats wrong?16:18
@wikingwell it's a gitflow feature16:18
@wikingit doesn't need PR merge...16:18
@HeikoSah16:18
@HeikoSdoes that really matter?16:19
@wikingyes16:19
@HeikoSapart from good practice?16:20
@HeikoSwiking: ok changed, btw ascii is working now16:25
@HeikoSI made use of the accuracy parameter in equals16:25
@HeikoSascii is lossy so comparing float numbers fails16:25
@HeikoSwiking: so how to merge the feature branch on github?16:26
@wikingon github16:26
@wikingno way16:26
@wikingcommandline16:26
@HeikoSwiking: so I push to my fork and then PR that?16:26
@HeikoSagainst develop?16:27
@wikingno16:28
@wikingjust push the changes into upstream's branch16:28
@HeikoSwell ok16:28
@wikingpush it into upstream's feature/SerialUTests16:29
@wikingand let's see what travis does with it16:29
shogun-buildbotbuild #1305 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1305  blamelist: Viktor Gal <viktor.gal@maeth.com>16:30
@wikingand since it's obviously still crashing16:30
@wikingwe dont want to merge it yet16:30
shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 8bab9a3 / src/shogun/modelselection/ModelSelectionParameters.h: https://github.com/shogun-toolbox/shogun/commit/8bab9a3225a8a54fe51af5525234a8793f0a4e8616:30
shogun-notifier-shogun: removed error for serialization, files are empty anyways16:30
shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 1932f5e / tests/unit/io/SerializationAscii_unittest.cc.jinja2: https://github.com/shogun-toolbox/shogun/commit/1932f5e5f08ba4b6a8db98b70d49626cc323bdcc16:30
shogun-notifier-shogun: add accuracy parameter for ascii seiralization since its lossy16:30
shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 925d527 / tests/unit/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/925d5278f62bc3b27e63195896c0372b376ae60516:30
shogun-notifier-shogun: activate ascii serialization tests16:30
@HeikoSwiking: ascii is now working16:30
@wikingHeikoS: yeah but check this https://travis-ci.org/shogun-toolbox/shogun/jobs/1059428116:30
@wikingfactor graph is dying atm16:31
@HeikoSwiking: i know but thats not my fault16:31
@HeikoSmaybe rebase against develop?16:31
@wikingi'll check now w816:31
@HeikoSwiking: only json and xml fail now16:31
@wiking'only' :D16:32
shogun-notifier-shogun: Heiko Strathmann :feature/SerialUTests * 2a84601 / tests/unit/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/2a84601c7fd8c6fee3ea4410c54e333913729f9516:32
shogun-notifier-shogun: activate hdf5 since it works16:32
@HeikoSwiking: should I rebase against develop to see whether the factor graph tests run then?16:32
@wikingmmm better not yet16:33
@wikingi have some changes coming up as well16:33
@wikinglol16:34
@wikingmsvc is amazing16:34
@wikingtemplate <class T>16:34
@wikingstatic inline T max(T a, T b)16:34
@wiking{16:34
@wikingreturn (a>=b) ? a : b;16:34
@wiking}16:34
@wikinguse of undefined type 'T'16:34
@wiking...16:35
@HeikoShehe16:35
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travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1059362116:35
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lisitsynwiking: hahah that's ok for msvc16:37
lisitsynthey hardly comply basic C++16:37
@HeikoSwiking: I got another issue16:39
@HeikoS/usr/local/include/shogun/io/SerializableXmlFile.h:19:27: fatal error: libxml/parser.h: No such file or directory16:39
@HeikoSah wait16:39
@HeikoSsorry my faiult16:39
@wikingHeikoS: i guess you are either missing libxml or else :)16:40
@HeikoSno its installed but in another dir16:40
@HeikoSbut thats not shoguns fault its my local program16:40
@HeikoSwiking: SPectrumRBFKernel.cpp16:44
@HeikoSdouble C = 0.8;16:44
@HeikoSconst char *filename="/fml/ag-raetsch/home/toussaint/scp/aawd_compbio_workshop/code_nora/data/profile/profiles";16:44
@HeikoSstd::ifstream fin(filename);16:44
@HeikoSSG_DEBUG("Reading profiles from %s\n", filename)16:44
@HeikoSstd::string line;16:44
@HeikoSsweet!16:44
@HeikoSlisitsyn: do you know whether any of the integration tests use the migration framework?16:45
@HeikoSin other words, did you add parameter mappings somewhere?16:45
@iglesiasgI got my first toy ipython notebook done16:45
@iglesiasghttp://nbviewer.ipython.org/633421416:45
@iglesiasgHeikoS, wiking, lisitsyn: let me know what you think guys :)16:45
@iglesiasgit is over simple but it is an start :D16:46
@HeikoSiglesiasg: nice!16:46
@HeikoSreading16:47
lisitsyniglesiasg: looks good16:48
@iglesiasgI am proof-reading now too hehe16:48
@iglesiasgthanks!16:48
lisitsyn/fml/ag-raetsch/home/toussaint/scp/aawd_compbio_workshop/code_nora/data/profile/profiles16:48
@HeikoSiglesiasg: ah man, thats so nice16:48
lisitsynlmfao16:48
@HeikoSfinally I understand what you are working on :)16:48
@HeikoSplease extend it, this is awesome!16:48
@HeikoSmaybe some real data experiments?16:48
@iglesiasgHeikoS, sure!16:49
@HeikoSmaybe add some references also16:49
@iglesiasgHeikoS, I am not sure if I should do that in this one or in a new one. What is the philosophy for these notebooks? One extensive or several short ones?16:49
@iglesiasgHeikoS, good idea16:49
@HeikoSwiking: how to run integration tests with cmake?16:49
@HeikoSiglesiasg: I would go for one very extensive for your GSoC project16:51
@iglesiasgHeikoS, all right16:51
@HeikoSthese are not our documentation ones but rather for the GSoC projects16:51
@HeikoSso that we have one notebook from each student16:51
@HeikoSto show off :D16:51
@iglesiasgHeikoS, it is a great idea to make these notebooks for each project16:52
@HeikoSyeah, I think so16:52
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@iglesiasglisitsyn, next I will include the wine data set16:54
@iglesiasgeverybody drunk :D16:54
@HeikoShaha :)16:54
@HeikoSwiking: still around?17:01
@HeikoSwiking: spaces in parameter names break the xml parser17:01
@HeikoStwo options:17:01
@HeikoS1.) do not allow spaces in parameter names (I would do that anyway)17:02
@HeikoS2.) modify xml parser17:02
@HeikoSfor 1.) we will have to change a few classes, which annoyingly means we will have to update the integration tests (I vote for removing them anyway)17:02
@HeikoSwiking: after that, xml will be working17:03
@iglesiasgpca should be burned17:11
@iglesiasgours17:11
@HeikoSwhy?17:13
@HeikoSnot working?17:13
@wikingHeikoS: yess17:14
@HeikoSwiking: ?17:14
@wikingHeikoS: yeah i would just do a s/\ /_/g17:14
@wikingon space17:14
@HeikoSwiking: at which point?17:14
@HeikoSwe cannot expect this from devs when registering the classes17:14
@wikingHeikoS: at writing out17:15
@HeikoSthe easiest solution is to throw an error when a parameter name contains a space17:15
@HeikoSwiking: ah I see17:15
@wikingHeikoS: of course the problem will be the reading in17:15
@wiking:P17:15
@HeikoSwiking: I would like to avoid that17:15
@HeikoSrather not have spaces17:15
@HeikoSnot reason for that anyway17:15
@HeikoSthe names should be consistent with c++ names of members17:16
@HeikoSfor many reasons17:16
@HeikoSand no spaces in there17:16
shogun-notifier-shogun: Viktor Gal :develop * ba239f3 / src/shogun/ (4 files): https://github.com/shogun-toolbox/shogun/commit/ba239f3b3072c8229df1001b891b30de2948719a17:23
shogun-notifier-shogun: Some more MSVC fixes17:23
@wikingCDynamicArray<SGVector<index_t> >* m_oob_indicies;17:26
@wikingmmm this ain't wokring17:27
@HeikoSwiking: no17:27
@wikingany other ideas that doesn't including using STL17:27
@HeikoSdont do this17:27
@wikingyeah i realised17:27
@wikingbut what then17:27
@iglesiasgtime to jogging, see you later guys!17:27
@HeikoSwhat exactly do you need?17:27
@wikingCDynamicArray<SGVector<index_t> >* m_oob_indicies;17:27
@wikingSGVector<index_t>17:27
@wikingarray17:27
@wikingor list17:27
@HeikoSdynamic?17:27
@wikingi dont mind17:27
@wikingyeah17:27
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@wikingooor17:28
@wikingnot necesarrily17:28
@HeikoSwiking: how many dimensions17:28
@wiking217:28
@HeikoSif its fixed, just use a matrix17:28
@wikingi mean SGVector<> is variable...17:28
@wikingi.e. not the same length17:28
@HeikoSif it has to be dynamic you can use DynamicArray17:28
@HeikoSah17:28
@HeikoSCList maybe?17:28
@wikingbut the number of SGVector<> is 'fixed'17:28
@wikingcan i add sgvector into a clist?17:29
@HeikoSdo you just need the individual vectors?17:29
@wikingyes17:29
@HeikoSCList is CSGObject17:29
@wikingyep17:29
@HeikoSgood question then17:29
@HeikoSare the vectors lengths fixed?17:30
@HeikoSwhen you allocate?17:30
@wikingyes17:30
@HeikoSyou could then just use a growing 1d array17:30
@HeikoSand map the indices17:30
@wikingeh17:31
@wikingno fucking way that it has to be this complicted17:31
@wikingto have a list of SGVectors17:31
@wikingi mean yeah i get it that we dont want to use STL17:31
@wikingbut this is crazy17:31
@HeikoSwiking: the problem simply is17:31
@HeikoSthat SG types are no CSGObjects17:31
@HeikoSmaybe we should have wrapper classes17:32
@HeikoSfor SGVector and SGMatrix17:32
@HeikoSwhat do you think about this?17:32
@HeikoSthen you can CList these17:32
@HeikoS?17:32
@HeikoSCList not even needed then, CDynamicObjectArray17:32
@HeikoSwiking: I think thats best and would solve this problem17:33
@HeikoSwiking: what do you think?17:34
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travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1059483617:34
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shogun-buildbotbuild #1879 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/187917:37
@HeikoSwiking: let me know, this might solve many problems we had with that in fact17:39
@HeikoSgoing home now, bye everyone17:39
shogun-buildbotbuild #1516 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1516  blamelist: Viktor Gal <viktor.gal@maeth.com>17:44
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shogun-buildbotbuild #44 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/44  blamelist: Viktor Gal <viktor.gal@maeth.com>17:51
@wikingmmm17:55
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travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1059487918:05
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shogun-buildbotbuild #1306 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1306  blamelist: Viktor Gal <viktor.gal@maeth.com>18:21
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@sonney2kwiking, you can just have lists of SGVectors with DynamicArray - what is the issue?18:42
@wikingsonney2k: i've tried new CDynamicArray<SGVector<index_t> >()18:43
@wikingand it fails18:43
@wikingsonney2k: /Users/wiking/shogun/src/shogun/lib/DynamicArray.h:628,18 - Error - no matching member function for call to 'add_vector'18:44
@wikingif i try doing that new18:44
@wikingbasically it cannot do this for SGVector<index_t>: m_parameters->add_vector(&m_array.array, &m_array.current_num_elements, "array", "Memory for dynamic array.");18:44
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@wikingHeikoS: android irc? seriously? :D18:47
@sonney2kwiking, why are you doing this? dynamic array is what you should add and it is an CSGObject18:49
@sonney2kalright so we have 3 buildbots still failing - cyg,bsd,osx18:49
@sonney2kthen we are back to normal18:49
@wikingyou mean CDynamicArray< CDynamicArray<index_t> >?18:49
@wikingsonney2k: afaik i dont generate the static interfaces in the right way + testing of them is not done yet18:50
@wikingsonney2k: now i'l just compiling the files in the _static dir and then link it with the shared libshogun18:50
@wikingsonney2k: btw msvc compiling is going to take a loooong while :)18:52
shogun-notifier-shogun: Roman Votyakov :develop * d5772c9 / / (14 files): https://github.com/shogun-toolbox/shogun/commit/d5772c9e89f5092468cae0c6abadc7effd8fee9719:01
shogun-notifier-shogun: add methods of the moments (for EP) to classes of the likelihood models19:01
shogun-notifier-shogun: Heiko Strathmann :develop * 850efc5 / / (14 files): https://github.com/shogun-toolbox/shogun/commit/850efc52872525f0c2c5637a27ce1ab808887c5419:01
shogun-notifier-shogun: Merge pull request #1459 from votjakovr/feature/gp_binary_classification19:01
shogun-notifier-shogun:19:01
shogun-notifier-shogun: Add methods of the moments (for EP) to classes of the likelihood models19:01
@wikingHeikoS: still around? i wanted to ask you something19:12
@wikingHeikoS: about data generators19:12
shogun-buildbotbuild #1487 of deb2 - static_interfaces is complete: Failure [failed compile octave_static]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb2%20-%20static_interfaces/builds/1487  blamelist: Roman Votyakov <votjakovr@gmail.com>19:12
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shogun-buildbotbuild #1517 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1517  blamelist: Roman Votyakov <votjakovr@gmail.com>19:16
shogun-buildbotbuild #45 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/45  blamelist: Roman Votyakov <votjakovr@gmail.com>19:20
@sonney2kwiking, what? no  new CDynamicArray<SGVector<index_t> >() will work19:20
@wikingsonney2k: no it does not19:20
@wikingtry it yourself19:20
@wikingnow i ended up doing DynamicObjectArray of DynamicArray19:21
@sonney2ktry int64_t instead of index_t19:21
@sonney2kwiking, not the intended solution19:21
@sonney2kway to cumbersome19:21
@sonney2kwiking, regarding msvc - I know it is not exactly a standard compliant compiler19:22
@wikingsonney2k: neither with int64_t nor with int32_t...19:22
@sonney2kwiking, well we use it this way19:23
@wikingwhere?19:23
@wikingCDynamicArray<SGVector<int64_t> >* a = new CDynamicArray<SGVector<int64_t> >();19:23
@wikingthis is just error19:23
@sonney2kwiking, what error?19:23
@wikingno workie :P19:23
@wiking/Users/wiking/shogun/src/shogun/lib/DynamicArray.h:628,18 - Error - no matching member function for call to 'add_vector'19:23
@wikingsame as CDynamicArray<SGVector<index_t> >19:23
@sonney2khmmhh bug in serialization code then19:25
@sonney2kwiking, actually easy to fix19:27
@sonney2kwiking, just add a add_vector method in base/Parameter.h for your SGVector<index_t> type19:28
@sonney2kwiking, and treat it the same way like the add_vector index_t** type19:28
@sonney2kand done19:28
shogun-notifier-shogun: Viktor Gal :develop * de0d4ba / / (6 files): https://github.com/shogun-toolbox/shogun/commit/de0d4bafd8be4fa33103aed04e0647dd1430f0b619:32
shogun-notifier-shogun: WIP: out of bag error for BaggingMachine19:32
@wikingsonney2k: yeah msvc is a bitch.... complains about templates and their parameters :))019:35
@HeikoSwiking, just to read :) let's talk tomorrow, typing here is too painful19:36
@sonney2kwiking, so shall I do the trivial add_vector change in parameters or will you?19:36
shogun-buildbotbuild #1307 of cyg1 - libshogun is complete: Failure [failed compile]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1307  blamelist: Roman Votyakov <votjakovr@gmail.com>19:38
@wikingsonney2k: u go19:39
@wikingi have other patches in my hands now19:39
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shogun-buildbotbuild #1601 of deb3 - modular_interfaces is complete: Failure [failed compile octave_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1601  blamelist: Roman Votyakov <votjakovr@gmail.com>20:02
shogun-buildbotbuild #1518 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1518  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>20:04
shogun-buildbotbuild #46 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/46  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>20:08
@wikingoh darn i've broke unit test20:10
shogun-buildbotbuild #1488 of deb2 - static_interfaces is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb2%20-%20static_interfaces/builds/148820:12
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travis-ci[travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1059878820:25
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@HeikoSred20:28
@wikingyes20:32
@wikingthis should make it green20:38
shogun-notifier-shogun: Viktor Gal :develop * 7a07455 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/7a07455a92b8e691e8a9fd5834f2f3c169fa6a5c20:38
shogun-notifier-shogun: Fix BaggingMachine mock test20:38
shogun-buildbotbuild #1308 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1308  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>20:39
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shogun-buildbotbuild #1882 of deb1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/1882  blamelist: Viktor Gal <viktor.gal@maeth.com>20:46
shogun-buildbotbuild #1602 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/160221:00
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travis-ci[travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1060028221:18
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@wikingyey back to green21:23
shogun-buildbotbuild #1883 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/188321:36
shogun-buildbotbuild #47 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/47  blamelist: Viktor Gal <viktor.gal@maeth.com>21:40
shogun-buildbotbuild #1519 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1519  blamelist: Viktor Gal <viktor.gal@maeth.com>21:40
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shogun-buildbotbuild #1309 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1309  blamelist: Viktor Gal <viktor.gal@maeth.com>22:20
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@sonney2kwiking, ahh I realize we only support stuff like SGVector<T>* foo;22:57
@sonney2kwiking, but not w/ serialization22:57
shogun-notifier-shogun: Kevin :develop * f2259e9 / src/shogun/converter/ica/ (8 files): https://github.com/shogun-toolbox/shogun/commit/f2259e9324012a1fd7582ca5c1ef4714cb13157123:05
shogun-notifier-shogun: added a getter for the time separated cov matrices on the appropriate ica techniques23:05
shogun-notifier-shogun: Kevin :develop * 14af09b / src/interfaces/python_modular/swig_typemaps.i: https://github.com/shogun-toolbox/shogun/commit/14af09b9ad9aa9cd068cd230d01602ac674f7e4e23:05
shogun-notifier-shogun: added a python out typemap for SGNDArray23:05
shogun-notifier-shogun: Kevin :develop * 17a21f9 / src/interfaces/octave_modular/swig_typemaps.i: https://github.com/shogun-toolbox/shogun/commit/17a21f9bb5a8162dd56257e52bfa683f025fae0923:05
shogun-notifier-shogun: added octave typemaps for SGNDArray23:05
shogun-notifier-shogun: Soeren Sonnenburg :develop * bf8f56d / src/ (10 files): https://github.com/shogun-toolbox/shogun/commit/bf8f56d2140a2e8ca324ad476a654c619f41861e23:05
shogun-notifier-shogun: Merge pull request #1456 from pickle27/develop23:06
shogun-notifier-shogun:23:06
shogun-notifier-shogun: ICA algs - added getter for time sep cov matrices and added some typemaps for SGNDArray23:06
shogun-notifier-shogun: Soeren Sonnenburg :develop * 936e7d1 / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/936e7d1dd3c0a2498fb21c89faec658bd12a2a7e23:15
shogun-notifier-shogun: require liboctave-dev and octave - should be octave 3.623:15
shogun-notifier-shogun: Soeren Sonnenburg :develop * b3cc269 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/b3cc269325689e7934d92d7db5d98504633f317623:15
shogun-notifier-shogun: require octave 3.6 and cmake 2.8.423:15
shogun-buildbotbuild #1520 of bsd1 - libshogun is complete: Failure [failed compile]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/bsd1%20-%20libshogun/builds/1520  blamelist: Soeren Sonnenburg <sonne@debian.org>, Kevin <kevinhughes27@gmail.com>23:19
shogun-buildbotbuild #48 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/osx1%20-%20libshogun/builds/48  blamelist: Soeren Sonnenburg <sonne@debian.org>, Kevin <kevinhughes27@gmail.com>23:22
-!- travis-ci [~travis-ci@ec2-23-23-19-157.compute-1.amazonaws.com] has joined #shogun23:54
travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1060384323:54
-!- travis-ci [~travis-ci@ec2-23-23-19-157.compute-1.amazonaws.com] has left #shogun []23:54
--- Log closed Mon Aug 26 00:00:31 2013
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