IRC logs of #shogun for Wednesday, 2013-09-04

--- Log opened Wed Sep 04 00:00:44 2013
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has joined #shogun00:02
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has quit [Ping timeout: 256 seconds]00:18
-!- hushell [~hushell@8-92.ptpg.oregonstate.edu] has joined #shogun00:35
-!- lisitsyn [~lisitsyn@fb2-lo1.global63.net] has quit [Quit: Leaving.]01:16
-!- besser82 [~besser82@fedora/besser82] has quit [Ping timeout: 264 seconds]01:59
-!- gsomix [~gsomix@83.234.54.223] has quit [Ping timeout: 240 seconds]02:03
-!- hushell [~hushell@8-92.ptpg.oregonstate.edu] has quit [Ping timeout: 245 seconds]02:19
-!- besser82 [~besser82@77-22-25-12-dynip.superkabel.de] has joined #shogun02:22
-!- besser82 [~besser82@77-22-25-12-dynip.superkabel.de] has quit [Changing host]02:22
-!- besser82 [~besser82@fedora/besser82] has joined #shogun02:22
-!- gsomix [~gsomix@188.168.14.54] has joined #shogun02:31
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has joined #shogun03:18
-!- sonne|osx_ [~sonne@f053040086.adsl.alicedsl.de] has joined #shogun03:35
-!- sonne|osx [~sonne@f053046104.adsl.alicedsl.de] has quit [Read error: Connection reset by peer]03:35
-!- sonne|osx_ is now known as sonne|osx03:35
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has quit [Ping timeout: 264 seconds]03:53
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has joined #shogun04:18
-!- foulwall [~zhengyang@114.255.40.7] has quit [Remote host closed the connection]05:08
-!- gsomix [~gsomix@188.168.14.54] has quit [Quit: Leaving]05:18
-!- nube [~rho@116.90.239.3] has joined #shogun05:31
-!- nube [~rho@116.90.239.3] has left #shogun []05:31
-!- sonne|work [~sonnenbu@91-64-72-127-dynip.superkabel.de] has quit [Ping timeout: 264 seconds]05:59
-!- sonne|work [~sonnenbu@91-64-72-127-dynip.superkabel.de] has joined #shogun05:59
-!- pickle27 [~kevin@d67-193-243-174.home3.cgocable.net] has joined #shogun06:06
-!- pickle27 [~kevin@d67-193-243-174.home3.cgocable.net] has left #shogun []06:19
-!- sonne|osx [~sonne@f053040086.adsl.alicedsl.de] has quit [Quit: sonne|osx]07:23
-!- sonne|osx [~sonne@89.204.139.235] has joined #shogun08:15
-!- shogun-notifier- [~irker@7nn.de] has joined #shogun08:25
shogun-notifier-shogun: Thoralf Klein :develop * 0ead02e / / (4 files): https://github.com/shogun-toolbox/shogun/commit/0ead02e18d83d82d535723f50225253b58f3886b08:25
shogun-notifier-shogun: Minor improvements, buxfixes, error handling.08:25
shogun-notifier-shogun: Thoralf Klein :develop * cdec406 / README.cmake: https://github.com/shogun-toolbox/shogun/commit/cdec40608d2965125188f52f6f3382b34cefda8e08:25
shogun-notifier-shogun: Updated build information in README.cmake: -DBUILD_DASHBOARD_REPORTS=ON08:25
shogun-notifier-shogun: Soeren Sonnenburg :develop * 6078104 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/6078104c4516aa7666cdb63ded5db1096eb922aa08:25
shogun-notifier-shogun: Merge pull request #1510 from tklein23/minor_fixes08:25
shogun-notifier-shogun:08:25
shogun-notifier-shogun: Minor improvements, buxfixes, error handling, documentation.08:25
shogun-buildbotbuild #1980 of deb1 - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/1980  blamelist: Soeren Sonnenburg <sonne@debian.org>, Thoralf Klein <thoralf.klein@zib.de>08:34
-!- sonne|osx [~sonne@89.204.139.235] has quit [Quit: sonne|osx]08:35
-!- travis-ci [~travis-ci@ec2-107-20-109-156.compute-1.amazonaws.com] has joined #shogun09:05
travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1096333209:05
-!- travis-ci [~travis-ci@ec2-107-20-109-156.compute-1.amazonaws.com] has left #shogun []09:05
-!- iglesiasg [~iglesias@s83-179-44-135.cust.tele2.se] has joined #shogun09:24
-!- mode/#shogun [+o iglesiasg] by ChanServ09:24
shogun-buildbotbuild #1598 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/bsd1%20-%20libshogun/builds/1598  blamelist: Thoralf Klein <thoralf.klein@zib.de>09:24
shogun-buildbotbuild #1378 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/cyg1%20-%20libshogun/builds/1378  blamelist: Thoralf Klein <thoralf.klein@zib.de>10:00
shogun-buildbotbuild #1681 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb3%20-%20modular_interfaces/builds/1681  blamelist: Thoralf Klein <thoralf.klein@zib.de>10:08
-!- van51 [~van51@athedsl-410351.home.otenet.gr] has joined #shogun11:23
van51hello sonne|work11:23
sonne|workhey van51!11:23
van51sorry for the delay, but I was out of town for some family stuff and I only had a data plan on my mobile11:23
van51sonne|work: in a couple of hours I promise it will be merge-able :)11:24
sonne|workok perfect :)11:24
-!- shogun-notifier- [~irker@7nn.de] has quit [Quit: transmission timeout]11:25
van51sonne|work: btw I changed the code a bit to support all DotFeatures11:25
van51sonne|work: and on the benchmarks from the methods benchmark_add_to_dense etc11:25
sonne|workwhat is the speed penalty?11:26
sonne|workI think we need sth like this but not sure how to do it elegently11:26
van51sonne|work: it was like 3 times slower, but when using it in a task with SVMOcas it was pretty much the same11:26
sonne|workelegantly11:26
sonne|workyeah that is too much :/11:26
sonne|workmaybe we can come up with sth more clever11:27
sonne|workso please do the PR for the fast variant that only supports a single feature type11:27
van51sonne|work: ok then11:27
van51sonne|work: when I push I will comment on the code where a change is needed and maybe we can come up with something better afterwards11:28
sonne|workok11:28
-!- lisitsyn [~lisitsin@mxs.kg.ru] has joined #shogun11:38
-!- HeikoS [~heiko@nat-162-241.internal.eduroam.ucl.ac.uk] has joined #shogun12:29
-!- mode/#shogun [+o HeikoS] by ChanServ12:29
-!- votjakovr [~votjakovr@host-46-241-3-209.bbcustomer.zsttk.net] has joined #shogun12:36
-!- besser82 [~besser82@fedora/besser82] has quit [Remote host closed the connection]12:39
van51sonne|work: turns out it's not x3 times slower, but more close to x2..  here is a comparison : https://gist.github.com/van51/643538112:42
van51sonne|work: what do you think?12:42
votjakovrHeikoS: hi!12:48
@HeikoSvotjakovr: hi!12:48
@HeikoSvotjakovr: how is it going?12:48
votjakovrHeikoS: not so bad :) please have a look: http://pastebin.com/zbpAP2Cv12:49
votjakovrHeikoS: is it Ok?12:49
@HeikoSvotjakovr: to include all parameters if not tree is specified?12:50
votjakovrHeikoS: this is the method to get derivatives in inference classes12:50
votjakovrHeikoS: wrt parameters12:51
@HeikoSvotjakovr: looks good to me, what is the particular question you have?12:51
votjakovrHeikoS: i'd like just show you :)12:51
votjakovrHeikoS: probably you have some other view12:51
@HeikoSvotjakovr: ok, I am fine with that, this particular setup is alsways the same for all GPs right?12:52
@HeikoSso that should be ok12:52
votjakovrHeikoS: yeah12:52
-!- shogun-notifier- [~irker@7nn.de] has joined #shogun12:54
shogun-notifier-shogun-data: Heiko Strathmann :master * 3c2209b / testsuite/tests/ (2 files): https://github.com/shogun-toolbox/shogun-data/commit/3c2209b73ca9faec8b3d753e336f9c7656aaa3e312:54
shogun-notifier-shogun-data: replaced integration tests to make travis work again12:54
shogun-notifier-shogun: Heiko Strathmann :develop * 675059a / data: https://github.com/shogun-toolbox/shogun/commit/675059a9aa91fc20ebbac0ff67c8a0b45e13575e12:57
shogun-notifier-shogun: fix travis faliures via new integration test data12:57
shogun-notifier-shogun: Heiko Strathmann :develop * 94fd974 / data: https://github.com/shogun-toolbox/shogun/commit/94fd974c64a68d33e52300e7bea6e65c435dff7d12:57
shogun-notifier-shogun: Merge pull request #1522 from karlnapf/develop12:57
shogun-notifier-shogun:12:57
shogun-notifier-shogun: set new data version12:57
@HeikoSiglesiasg: btw I tried to fix travis, lets hope ;)13:00
@iglesiasgHeikoS, the tester?13:01
@iglesiasgyeah, let's hope it gets fixed13:01
@HeikoSiglesiasg: actually it was the test file13:02
shogun-buildbotbuild #1982 of deb1 - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/1982  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>13:02
@HeikoSfor some reason caused tester.py to crash13:02
@HeikoSiglesiasg: I really want to get rid of those integration tests, I have never seen a case yet where they helped and saw many cases where they just cause trouble and work13:03
@iglesiasgHeikoS, yes, I think we should push that initiative definitely13:03
@iglesiasgthe question to answer is, do we lose anything dropping integration tests? Is what they cover already done by unit tests?13:04
@iglesiasgor can be done with unit tests rather13:05
@HeikoSiglesiasg: I checked them, almost all of them can be replaced by units13:05
@iglesiasgHeikoS, why almost? Which ones cannot?13:06
@HeikoSin fact thats better since we currently only know THAT something changes, whereas with unit we know whats wrong since one expects a certain result13:06
@HeikoSlike internal states of the objects cannot really be covered13:06
@HeikoSiglesiasg: but all the numerical stuff can13:06
@HeikoSI dont think we loose anything if we dropped them after replacing by units13:07
shogun-buildbotbuild #1981 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/198113:07
shogun-buildbotbuild #1599 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/bsd1%20-%20libshogun/builds/1599  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>13:17
votjakovrHeikoS: May i rename get_log_ml_estimate to get_log_marginal_likelihood_estimate?13:24
@HeikoSvotjakovr: rename it to get_marginal_likelihood_estimate13:25
@HeikoSvotjakovr: since that is what it does, the log is wrong, could you also update the documentation?13:25
@HeikoSit returns an unbiased estimate to the marginal likelihood, and this number is returned in log-domain13:25
@HeikoSwhich is different to an unbiased estimate of the log-ml13:26
votjakovrHeikoS: ok, no problem13:26
@HeikoSvotjakovr: thanks!13:26
shogun-buildbotbuild #1682 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb3%20-%20modular_interfaces/builds/168213:43
-!- iglesiasg [~iglesias@s83-179-44-135.cust.tele2.se] has quit [Quit: Ex-Chat]13:47
-!- travis-ci [~travis-ci@ec2-54-242-151-39.compute-1.amazonaws.com] has joined #shogun13:47
travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1097035213:47
-!- travis-ci [~travis-ci@ec2-54-242-151-39.compute-1.amazonaws.com] has left #shogun []13:47
shogun-buildbotbuild #1379 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/cyg1%20-%20libshogun/builds/1379  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>13:54
-!- lisitsyn [~lisitsin@mxs.kg.ru] has quit [Read error: Connection reset by peer]15:39
-!- van51 [~van51@athedsl-410351.home.otenet.gr] has quit [Quit: Leaving.]15:45
-!- shogun-notifier- [~irker@7nn.de] has quit [Quit: transmission timeout]15:57
-!- votjakovr [~votjakovr@host-46-241-3-209.bbcustomer.zsttk.net] has quit [Quit: Good bye!]16:27
-!- travis-ci [~travis-ci@ec2-23-20-152-199.compute-1.amazonaws.com] has joined #shogun16:59
travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1097035216:59
-!- travis-ci [~travis-ci@ec2-23-20-152-199.compute-1.amazonaws.com] has left #shogun []16:59
-!- sonne|osx [~sonne@89.204.153.197] has joined #shogun17:07
-!- iglesiasg [~iglesias@s83-179-44-135.cust.tele2.se] has joined #shogun17:07
-!- mode/#shogun [+o iglesiasg] by ChanServ17:07
-!- sonne|osx [~sonne@89.204.153.197] has quit [Ping timeout: 240 seconds]17:15
-!- sonne|osx [~sonne@82.113.121.123] has joined #shogun17:17
thoralfHey S?ren.17:19
sonne|osxthoralf: oh hey17:24
sonne|osxthoralf: whats up?17:24
thoralfsonne|osx: Nothing - except one PR I just submitted few minutes ago.17:25
thoralfsonne|osx: Maybe you could tell me if I'm wrong, because I'm not used to template programming any more.17:26
sonne|osxthoralf: you are touching a minefield17:26
thoralfsonne|osx: Which one?17:27
sonne|osxwhenever we use templates we have to think how we represent this in the modular interfaces17:27
thoralfsonne|osx: Hmm.  I think I didn't change the API.17:27
thoralfsonne|osx: Would travis tell if I did?17:28
sonne|osxthoralf: not sure about travis buildbot should though17:29
sonne|osxthoralf: anyway it would be best to send the non-templates fixes separately17:29
sonne|osxgtg17:29
* sonne|osx afk17:29
-!- sonne|osx [~sonne@82.113.121.123] has quit [Quit: sonne|osx]17:29
-!- pickle27 [~kevin@d67-193-243-174.home3.cgocable.net] has joined #shogun17:43
-!- pickle27 [~kevin@d67-193-243-174.home3.cgocable.net] has left #shogun []17:43
-!- van51 [~van51@athedsl-410351.home.otenet.gr] has joined #shogun18:02
-!- lisitsyn [~lisitsyn@fb2-lo1.global63.net] has joined #shogun18:11
-!- shogun-notifier- [~irker@94.23.237.10] has joined #shogun18:14
shogun-notifier-shogun: Thoralf Klein :develop * 300f95a / src/shogun/ (3 files): https://github.com/shogun-toolbox/shogun/commit/300f95aeabeea347d221961a4ef5d1a909b249c118:14
shogun-notifier-shogun: Pending minor fixes.18:14
shogun-notifier-shogun: Sergey Lisitsyn :develop * acec71c / src/shogun/ (3 files): https://github.com/shogun-toolbox/shogun/commit/acec71c4e674f5f27c97026beccab1a27835682e18:14
shogun-notifier-shogun: Merge pull request #1526 from tklein23/minor_fixes18:14
shogun-notifier-shogun:18:14
shogun-notifier-shogun: Pending minor fixes.18:14
lisitsynthoralf: I am not sure about it as well as Soeren18:17
thoralflisitsyn: The templates thing?18:17
lisitsynthoralf: ja18:17
thoralflisitsyn: Well, the change doesn't fix any bugs (except code smell ;)).  Let it be an excercise.18:20
thoralflisitsyn: Anyway, how can we check if it broke something?18:20
thoralflisitsyn: Unit tests for the modular/static interfaces?18:20
shogun-buildbotbuild #1983 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/198318:25
shogun-buildbotbuild #1600 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/bsd1%20-%20libshogun/builds/1600  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>18:30
lisitsynthoralf: no idea actually18:31
@iglesiasglisitsyn, thoralf: running the the examples locally in your machine could be an start18:33
shogun-buildbotbuild #1601 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/bsd1%20-%20libshogun/builds/1601  blamelist: Thoralf Klein <thoralf.klein@zib.de>18:34
thoralfiglesiasg: Doesn't travis run the examples?18:35
@iglesiasgthoralf, good point. I guess it should18:35
thoralfiglesiasg: Travis is already fine - but still we're not sure if I could've broken something. :)18:36
@HeikoSlisitsyn: !18:42
@HeikoSI need your help18:42
lisitsynHeikoS: good18:42
lisitsyn;)18:42
@HeikoSlisitsyn: haha :)18:42
@HeikoSlisitsyn: Eigenvalues18:42
@HeikoSextremal18:42
lisitsynyes18:42
@HeikoSlambdays Lanczos implementation does not converge18:43
@HeikoSlisitsyn: I need some preconditioned method18:43
lisitsynehm interesting18:43
@HeikoSlisitsyn: slep has one18:43
@HeikoSlisitsyn: https://code.google.com/p/blopex/18:43
@HeikoSthis one18:43
@HeikoShave you heard of that?18:43
@HeikoSor do you have any other ideas?18:43
lisitsynHeikoS: hmm not really18:43
lisitsynHeikoS: so the condition number is bad, right?18:43
@HeikoSlisitsyn: yes, but there is something else, since I increased the smallest eigenvalue quite a bit18:44
lisitsynHeikoS: with shift?18:44
@HeikoSyes18:44
lisitsynHeikoS: have you already tried that 'feast' solver?18:45
@HeikoSreference?18:45
lisitsynhttp://www.ecs.umass.edu/~polizzi/feast/18:45
lisitsynHeikoS: in my opinion the main reason to trust it - intel took it to MKL18:46
lisitsynbut I can't say anything about stability18:46
@HeikoSlisitsyn: ah thats a good idea18:46
@HeikoSis this already in shogun or did someone use it?18:47
lisitsynHeikoS: no18:47
@HeikoSFast convergence - FEAST converges in ~2-3 iterations with very high accuracy18:47
@HeikoShaha18:47
@HeikoSif that was true18:47
lisitsynHeikoS: that can be true18:47
@HeikoSlanczos did not converge after 3000018:47
lisitsynHeikoS: arpack converges in a few iterations too18:47
lisitsynbut the iteration is not that simple step18:47
@HeikoSarpack, does it have a sparse eigensolver?18:48
lisitsynHeikoS: it doesn't depend on representation18:48
@HeikoSits definitely more modern than the old things I am currently using18:48
lisitsynHeikoS: with given vector x it needs Ax and sometimes A^{-1}x18:49
@HeikoSarpack just contains the std stuff18:50
lisitsynHeikoS: arpack is not numerically stable though18:50
lisitsynpeople complain about its stability18:51
@HeikoSok18:52
@HeikoSfeast seems to compute all eigenpairs18:52
lisitsynHeikoS: in a given interval18:52
@HeikoSlisitsyn: I just need the smallest18:53
@HeikoSand largest18:53
@HeikoSlower bound is obviously 018:53
lisitsynHeikoS: should be possible, lemme check18:53
@HeikoSbut upper I dont know18:53
lisitsynHeikoS: hmm true19:01
lisitsynHeikoS: well there is RRR method19:01
lisitsynlapack's dsyevr19:02
lisitsynonce tridiagonalized it can obtain eigenvalues19:02
lisitsynHeikoS: what do you use to tridiagonalize?19:02
@HeikoSno idea19:02
@HeikoSI dont even know if thats possible19:02
-!- iglesiasg [~iglesias@s83-179-44-135.cust.tele2.se] has quit [Quit: Ex-Chat]19:03
lisitsynHeikoS: lambday asked me about lapacks tridiagonalization19:06
lisitsynbut it is dense19:06
lisitsynafaik you use insane sparse matrices19:06
shogun-buildbotbuild #1380 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/cyg1%20-%20libshogun/builds/1380  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>19:06
lisitsynHeikoS: yes dstemr19:08
@HeikoSlisitsyn:  thats for something else19:08
@HeikoSsmaller matrix19:09
shogun-notifier-shogun: Heiko Strathmann :develop * 7d9ffd7 / src/shogun/ (14 files): https://github.com/shogun-toolbox/shogun/commit/7d9ffd7baad1c2c8affbdce519ab410f9f789a5519:09
shogun-notifier-shogun: some changes in the debug functions19:09
shogun-notifier-shogun: Heiko Strathmann :develop * 0e6f16e / src/shogun/lib/computation/job/IndependentJob.h: https://github.com/shogun-toolbox/shogun/commit/0e6f16e036f8f65eb1368d6283f76d3502b4460419:09
shogun-notifier-shogun: change in debug function19:09
shogun-notifier-shogun: Heiko Strathmann :develop * 55cf8e1 / src/shogun/ (15 files): https://github.com/shogun-toolbox/shogun/commit/55cf8e1310da1c95ad0abf4f0d0c275c98cf7eec19:09
lisitsynHeikoS: yes tridiagonalized form19:09
shogun-notifier-shogun: Merge pull request #1527 from karlnapf/develop19:09
shogun-notifier-shogun:19:09
shogun-notifier-shogun: Some updates to debug messages19:09
lisitsynHeikoS: forgot :)19:09
shogun-buildbotbuild #1684 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb3%20-%20modular_interfaces/builds/1684  blamelist: Thoralf Klein <thoralf.klein@zib.de>19:11
lisitsynHeikoS: I don't think arpack is going to be worse than simple lanzcos19:12
@HeikoSlisitsyn: yeah maybe its worth a try19:12
@HeikoSbut we really need preconditioned methods19:12
lisitsynHeikoS: then try that lobpcg too19:13
@HeikoSlisitsyn: yep will do, but thats some porting work right?19:13
lisitsynHeikoS: I didn't check the code who knows19:13
shogun-buildbotbuild #1985 of deb1 - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/1985  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>19:18
-!- zxtx [~zv@cpe-75-83-151-252.socal.res.rr.com] has quit [Read error: Connection reset by peer]19:18
-!- sonne|osx [~sonne@f053040086.adsl.alicedsl.de] has joined #shogun19:21
shogun-buildbotbuild #1986 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb1%20-%20libshogun/builds/198619:22
shogun-buildbotbuild #1602 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/bsd1%20-%20libshogun/builds/1602  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>19:28
shogun-buildbotbuild #1381 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/cyg1%20-%20libshogun/builds/1381  blamelist: Thoralf Klein <thoralf.klein@zib.de>19:49
van51sonney2k: sonne|osx: ping20:16
-!- vgorbati [~vgorbati@91.216.173.29] has joined #shogun20:17
sonne|osxvan51: hey20:19
van51sonne|osx: I re-ran the benchmarks more  carefully and it turns out that when using the Release settings the newest code is faster20:19
van51sonne|osx: https://gist.github.com/van51/643538120:19
sonne|osxvan51: ohh it is important to do benchmarks always w/ optimizations enabled20:20
sonne|osxvan51: with -O0 it can be arbitrarily much slower20:20
sonne|osxvan51: I am not sure what the benchmark is showing20:21
van51sonne|osx: oops missing context indeed20:22
sonne|osxbenchmark dot vs benchmark dot2?20:22
van51sonne|osx: it's basically this benchmark here : https://github.com/van51/shogun/blob/9e13ff436ba23ee4e7b9ff9e455c37bf5774b46d/benchmarks/rf_feats_benchmark.cpp20:22
shogun-buildbotbuild #1685 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb3%20-%20modular_interfaces/builds/168520:23
van51with 1k examples20:23
van51and there is the total time that the RF needed when they were coded just for the DenseFeatures20:23
van51vs when they are coded for DotFeatures20:23
sonne|osxvan51: hmmhh 1k examples is not so exciting... do more examples and fewer dims rather20:23
van51sonne|osx: okie20:24
vgorbatisonne|osx: hi there! How is shogun doing?)20:29
sonne|osxvgorbati: what?20:29
vgorbatiIt was a form of 'How are you doing' question:)20:31
lisitsynvgorbati: hey20:31
vgorbatisonne|osx: I guess I wrote something wrong?)20:31
vgorbatilisitsyn: hi20:32
shogun-buildbotbuild #1382 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/cyg1%20-%20libshogun/builds/1382  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>20:32
-!- iglesiasg [~iglesias@s83-179-44-135.cust.tele2.se] has joined #shogun20:33
-!- mode/#shogun [+o iglesiasg] by ChanServ20:33
vgorbatilisitsyn, sonne|osx: I've recently finished some backbone code (mainly abstract interfaces) of neural networks in shogun, and I wanted to ask what if I push this code now, so that you can review it and find what I did wrong so far?20:35
lisitsynvgorbati: yeah please issue a PR20:37
shogun-buildbotbuild #1683 of deb3 - modular_interfaces is complete: Failure [failed compile csharp_modular]  Build details are at http://buildbot.shogun-toolbox.orgbuilders/deb3%20-%20modular_interfaces/builds/1683  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>20:39
vgorbatilisitsyn: done20:42
-!- zxtx [~zv@rrcs-76-79-81-162.west.biz.rr.com] has joined #shogun20:50
-!- van51 [~van51@athedsl-410351.home.otenet.gr] has quit [Quit: Leaving.]21:00
-!- shogun-buildbot [~shogun-bu@7nn.de] has quit [Quit: buildmaster reconfigured: bot disconnecting]21:17
-!- shogun-buildbot [~shogun-bu@7nn.de] has joined #shogun21:18
@sonney2kvgorbati, no worries I am just too busy :)21:18
@sonney2kvgorbati, and yes nice - sending a PR is certainly a good thing!21:19
vgorbatisonney2k: ok, thanks. There isn't much to show in this PR, but I just want to make sure that I did not miss something so far)21:21
-!- vgorbati [~vgorbati@91.216.173.29] has left #shogun []21:47
-!- sonne|osx [~sonne@f053040086.adsl.alicedsl.de] has quit [Remote host closed the connection]21:53
-!- sonne|osx [~sonne@f053040086.adsl.alicedsl.de] has joined #shogun22:05
-!- shogun-notifier- [~irker@94.23.237.10] has quit [Quit: transmission timeout]22:10
-!- shogun-notifier- [~irker@7nn.de] has joined #shogun22:16
shogun-notifier-shogun: Soeren Sonnenburg :develop * 9a99b4f / examples/undocumented/python_modular/ (4 files): https://github.com/shogun-toolbox/shogun/commit/9a99b4ff0c71bfefcd0d7dd5f110f48209568c8822:16
shogun-notifier-shogun: convert more examples to csvfile22:16
shogun-notifier-shogun: Heiko Strathmann :develop * ba135a8 / CMakeLists.txt,cmake/external/ColPack.cmake: https://github.com/shogun-toolbox/shogun/commit/ba135a86007feac0e885eec3ad0ec95948938b7522:18
shogun-notifier-shogun: added bundle colpack option to cmake22:18
shogun-notifier-shogun: Heiko Strathmann :develop * 4cce414 / src/shogun/mathematics/logdet/ (3 files): https://github.com/shogun-toolbox/shogun/commit/4cce4145e2b6780f82fe3791375200ab17a0e2a322:18
shogun-notifier-shogun: some more updates on debug functions22:18
shogun-notifier-shogun: Heiko Strathmann :develop * b4277b0 / cmake/external/ColPack.cmake: https://github.com/shogun-toolbox/shogun/commit/b4277b0ea3e4dce982aa1801f5fede6e66b11ee222:18
shogun-notifier-shogun: fixed copy paste error22:18
shogun-notifier-shogun: Heiko Strathmann :develop * 4653db9 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/4653db9ad46e3050184a198e56d0f5ac19b0359322:18
shogun-notifier-shogun: use JSON template for bundling colpack22:18
shogun-notifier-shogun: Heiko Strathmann :develop * 2a52e44 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/2a52e44e12424dd5a6b0adb7e32826f3ef3b32f222:18
shogun-notifier-shogun: Merge pull request #1530 from karlnapf/develop22:18
shogun-notifier-shogun:22:18
shogun-notifier-shogun: try to bundle colpack22:18
shogun-buildbotbuild #1988 of deb1 - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/1988  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>22:26
shogun-notifier-shogun: Heiko Strathmann :develop * f78a727 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/f78a727f2182b183781b573ab3b2adb71ecac8a422:29
shogun-notifier-shogun: fixed accidentially deleted json bundle22:29
shogun-notifier-shogun: Heiko Strathmann :develop * bc8c449 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/bc8c449c9d1d5547958acc8935e60965580da33322:29
shogun-notifier-shogun: Merge pull request #1531 from karlnapf/develop22:29
shogun-notifier-shogun:22:29
shogun-notifier-shogun: fixed accidentially deleted json bundle22:29
shogun-buildbotbuild #82 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/osx1%20-%20libshogun/builds/82  blamelist: Soeren Sonnenburg <sonne@debian.org>22:30
shogun-buildbotbuild #1603 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1603  blamelist: Soeren Sonnenburg <sonne@debian.org>22:30
shogun-buildbotbuild #1604 of bsd1 - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1604  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>22:31
shogun-buildbotbuild #83 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/osx1%20-%20libshogun/builds/83  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>22:34
shogun-notifier-shogun: Heiko Strathmann :develop * f945aea / cmake/external/ColPack.cmake: https://github.com/shogun-toolbox/shogun/commit/f945aea2b3de3d1a214ce2495980eb594d1067ac22:42
shogun-notifier-shogun: another issue fixed22:42
shogun-notifier-shogun: Heiko Strathmann :develop * 8d93e85 / cmake/external/ColPack.cmake: https://github.com/shogun-toolbox/shogun/commit/8d93e85951c6c58e4ac24847ea640f03131ebb6d22:42
shogun-notifier-shogun: Merge pull request #1533 from karlnapf/develop22:42
shogun-notifier-shogun:22:42
shogun-notifier-shogun: another colpack issue fixed22:42
-!- HeikoS [~heiko@nat-162-241.internal.eduroam.ucl.ac.uk] has quit [Quit: Leaving.]22:52
-!- hushell [~hushell@c-98-232-178-161.hsd1.or.comcast.net] has quit [Ping timeout: 245 seconds]22:54
shogun-buildbotbuild #1383 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/cyg1%20-%20libshogun/builds/1383  blamelist: Soeren Sonnenburg <sonne@debian.org>23:09
shogun-buildbotbuild #1989 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/198923:09
shogun-buildbotbuild #1991 of deb1 - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/1991  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:10
shogun-buildbotbuild #1686 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/1686  blamelist: Soeren Sonnenburg <sonne@debian.org>23:12
shogun-notifier-shogun: Soeren Sonnenburg :develop * 4f50e29 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/4f50e298b0450cfb79e488be1fe12dff57132cad23:15
shogun-notifier-shogun: fix description of prefix/destdir23:15
shogun-buildbotbuild #1605 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1605  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:16
shogun-buildbotbuild #84 of osx1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/osx1%20-%20libshogun/builds/84  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:18
shogun-buildbotbuild #1687 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/1687  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:20
shogun-buildbotbuild #1992 of deb1 - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/1992  blamelist: Soeren Sonnenburg <sonne@debian.org>23:21
shogun-notifier-shogun: Soeren Sonnenburg :develop * 1c78845 / examples/undocumented/python_modular/ (4 files): https://github.com/shogun-toolbox/shogun/commit/1c788454c9835d3347b06ff1d27a99b0621d71e523:28
shogun-notifier-shogun: import CSVFile23:28
shogun-buildbotbuild #1993 of deb1 - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/1993  blamelist: Soeren Sonnenburg <sonne@debian.org>23:33
-!- travis-ci [~travis-ci@ec2-54-234-56-9.compute-1.amazonaws.com] has joined #shogun23:43
travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1099036423:43
-!- travis-ci [~travis-ci@ec2-54-234-56-9.compute-1.amazonaws.com] has left #shogun []23:43
-!- zxtx [~zv@rrcs-76-79-81-162.west.biz.rr.com] has quit [Ping timeout: 264 seconds]23:45
shogun-buildbotbuild #1384 of cyg1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/cyg1%20-%20libshogun/builds/1384  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:52
shogun-buildbotbuild #1688 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/1688  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>23:55
--- Log closed Thu Sep 05 00:00:45 2013

Generated by irclog2html.py 2.10.0 by Marius Gedminas - find it at mg.pov.lt!