IRC logs of #shogun for Wednesday, 2014-03-19

--- Log opened Wed Mar 19 00:00:44 2014
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thoralfHey shogies01:08
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chakrihi! I am totally new to git flow. I know how each command works, but I don't know when and where to use them. I mean, I have a theoritical understanding05:04
chakriI didn't get quite comfortable with the terminology..05:04
chakriNow, I've downloaded the shogun-develop (master) as zip.05:05
Saurabh7chakri, have a look at this https://help.github.com/articles/fork-a-repo05:10
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sonne|workthoralf: chocies?08:01
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thoralfHey sonne|work08:15
thoralfWhat's chocies?08:15
sonne|workthoralf: shogies, chocies :)08:15
sonne|workyumm!08:15
thoralfAh! :D08:15
thoralfNo, Shogunies ;)08:15
thoralfGoogies sounds insane ;)08:15
thoralfGoonies08:16
sonne|workshogoonies08:16
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thoralfHey Sergey08:50
lisitsynthoralf: hey08:59
abinash_pandathoralf: Hi !09:09
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shogun-notifier-shogun: Thoralf Klein :develop * 8814717 / / (46 files): https://github.com/shogun-toolbox/shogun/commit/8814717e6b2e588223b6ebd415c6110a0a868fd210:00
shogun-notifier-shogun: src/shogun/lib/CircularBuffer.cpp10:00
shogun-notifier-shogun: src/shogun/lib/Compressor.cpp10:00
shogun-notifier-shogun: src/shogun/lib/computation/aggregator/StoreScalarAggregator.cpp10:00
shogun-notifier-shogun: src/shogun/lib/computation/aggregator/StoreVectorAggregator.cpp10:00
shogun-notifier-shogun: src/shogun/lib/computation/engine/SerialComputationEngine.cpp10:00
shogun-notifier-shogun: Thoralf Klein :develop * 3995eec / src/shogun/lib/config.h.in: https://github.com/shogun-toolbox/shogun/commit/3995eec96d0e5e44255aa33191044de14ec8b19e10:00
shogun-notifier-shogun: Adding guards to config.h.in10:00
shogun-notifier-shogun: Thoralf Klein :develop * 4c4a5b2 / / (32 files): https://github.com/shogun-toolbox/shogun/commit/4c4a5b277119ff700afa7ab876d88db1de3b66de10:00
shogun-notifier-shogun: src/shogun/io/BinaryFile.cpp10:00
shogun-notifier-shogun: src/shogun/io/CSVFile.cpp10:00
shogun-notifier-shogun: src/shogun/io/File.cpp10:00
shogun-buildbot_build #2783 of deb1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/2783  blamelist: Thoralf Klein <thoralf@fischlustig.de>10:05
thoralfThis issue should have been fixed.10:11
thoralfIs it possible that the buildbot wasn't run on a clean checkout?10:11
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shogun-buildbot_build #2784 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/278410:15
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shogun-buildbot_build #2174 of bsd1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/217410:23
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jiaolongHi, I have dowloaded gtest and gmock. I have no idea how to install it. Can anyone help me?10:40
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@besser82jiaolong, gtest and gmock are build by shogun-cmake-stuff11:11
@besser82jiaolong, one usually doesn't install them  ;)11:12
@besser82jiaolong, they are meant to build with the project along and linked into the testsuite-binary11:12
jiaolongbesser82: OK, thanks, I have no experience with them. Just because my PR got an error in Travis which is caused by IsomapTest. So I want to run test on my local repo.11:20
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@besser82jiaolong, then you possibly want ot checkout all submodules: git submodule init && git submodule update11:21
@besser82jiaolong, and reconfigure your builldtree with cmake -DENABLE_TESTING=ON11:21
jiaolongbesser82: Thank you! BTW, I rebased the latest shogun repo while I got an compile error: so_multiclass.cpp11:22
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@besser82jiaolong, rebuild and run ctest from build tree  ;)11:22
@besser82jiaolong, what was the exact error-msg?11:23
jiaolongbesser82, so_multiclass.cpp:94:28: error: ‘init_shogun_with_defaults’ was not declared in this scope11:23
jiaolongbesser82,so_multiclass.cpp:189:14: error: ‘exit_shogun’ was not declared in this scope11:24
@besser82jiaolong, sounds like missing headers / declarations...11:25
jiaolongbesser82, My local develop branch has no other commit than the upstream11:26
jiaolongbesser82, so_multiclass.cpp should have pssed test on Travis, right?11:28
@besser82jiaolong, mhhhh.... strange...11:28
jiaolongbesser82, I don't know what is missing in my local branch11:28
@besser82jiaolong, lemme check ...11:28
@besser82jiaolong, yes11:28
@besser82jiaolong, maybe it is because of some missing dependencies....11:28
@besser82jiaolong, which OS you are using?11:29
jiaolongbesser82, ubuntu 12.0411:29
@besser82jiaolong, ok, so it might be because of missing / to old eigen311:30
@besser82jiaolong, try to add "-DBUNDLE_EIGEN=ON" to your cmake args...  and rebuild  ;)11:30
jiaolongbesser82, I have compiled many times before rebase this latest version11:30
@besser82jiaolong, afaik there were changes in #ifdef statements regarding eigen311:31
jiaolongbesser82, and never got any error. OK, I will do that. Thank you!11:31
@besser82jiaolong, which might cause that trouble...11:31
@besser82jiaolong, you're welcone11:32
jiaolongbesser82, one more question. I updated submodule while I couldn't find the latest data merged in shogun-data11:32
jiaolongbesser82, in shogun-data repo there is a new dataset11:33
@besser82jiaolong, i know, but that data is for some yet open PR to shogun11:33
@besser82jiaolong, so it doesn't matter11:34
jiaolongbesser82, OK, thank you again11:34
@besser82jiaolong, np  :D11:34
shogun-buildbot_build #233 of clang34 - undefined behaviour analysis is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/233  blamelist: Thoralf Klein <thoralf@fischlustig.de>11:47
shogun-buildbot_build #2072 of deb2 - static_interfaces is complete: Failure [failed cmdline static]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb2%20-%20static_interfaces/builds/2072  blamelist: tklein23 <tklein23@users.noreply.github.com>, Thoralf Klein <thoralf@fischlustig.de>11:51
chakrihow to find the code corresponding to the 'Essential Deep Learning Modules' idea on the ideas page?12:20
chakriIf it counts, I would like to work using matlab, python and c++ in that preference12:27
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lisitsynchakri: sorry what do you mean?12:47
chakriIt is mentioned in the template that showing some kind of code is necessary12:50
chakrii.e., no previous proposals got accepted which have no code12:50
chakriIt is also recommended to fork the shogun repo and make some edits.12:51
lisitsynchakri: yeah it is a requirement to resolve some issue or improve something12:51
chakrisince, I am trying to work on deep learning modules, I would like to find the code related to that..12:51
chakriOn the github page it shows that, python and matlab modular interfaces are mature and have no known issues.12:52
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chakriHow am I supposed to find the bugs, then?12:52
chakrialso, most of the modules are undocumented12:54
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chakriI am a beginner and not so comfortable with github...13:05
chakriso, feel free to correct me, anytime!13:05
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@besser82chakri, if you have questions about using git || github just ping.  I'll try me best to get you basic knowledge about things are going. :D13:20
chakriI am sorry! what do you mean by "ping"ing?13:21
@besser82chakri, like adding me nick to the msg  ;)13:22
@besser82chakri, so my client will give me a "ping"-sound showing me there is some msg adressed to me13:22
@besser82chakri, like the way I'm just writing to you13:23
@besser82lisitsyn, around?13:23
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shogun-buildbot_build #228 of debian wheezy - memcheck is complete: Failure [failed memory check]  Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/228  blamelist: tklein23 <tklein23@users.noreply.github.com>, Thoralf Klein <thoralf@fischlustig.de>13:40
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lisitsynbesser82: yes13:53
chakribesser82, I've been using github for windows...14:02
chakribesser82, it shows all the pull requests and some other messages14:03
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dhruv13jwiking: you there?14:04
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pl8787In issue #1971 does anybody know what's the meaning of gm and gv in the return value of function ElogLik.m14:07
chakriany link to the issue?14:09
chakripl8787, can you give a link for the issue?14:10
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chakriwhere is the issues page on github?14:21
chakrigot it! https://github.com/shogun-toolbox/shogun/issues?labels=GSoC+ideas&state=open14:21
pl8787https://github.com/shogun-toolbox/shogun/issues/1971#issuecomment-3797183114:22
pl8787yes14:22
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abinash_pandawiking: Hi ! If you could review my GSoC application http://www.google-melange.com/gsoc/proposal/review/student/google/gsoc2014/abinashpanda/5668600916475904?validated=True#15:07
@wikingabinash_panda: people will review when they can... all of us works hard to do this asap, but you have to understand our situation as well. and trust me it doesn't help if you bug people about it...15:16
abinash_pandawiking: Ok. I apologize for this one.15:17
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nikolisgalHello all I am trying to install shogun from git source in a fedora 19 machine and i am getting this compilation error /home/nikolis/gitjava/shogun/src/shogun/transfer/multitask/MultitaskL12LogisticRegression.cpp: In member function ‘virtual bool shogun::CMultitaskL12LogisticRegression::train_locked_implementation(shogun::SGVector<int>*)’:15:46
nikolisgal/home/nikolis/gitjava/shogun/src/shogun/transfer/multitask/MultitaskL12LogisticRegression.cpp:84:59: error: invalid use of incomplete type ‘class shogun::CDotFeatures anybody knows what's my fault ?15:46
lisitsynnikolisgal: hey15:51
lisitsynnikolisgal: doesn't look like your fault15:52
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nikolisgallisitsyn any idea of how should I proceed ?15:55
lisitsynnikolisgal: please try to add #include <shogun/features/DotFeatures.h>15:56
lisitsynand well if you see it15:56
lisitsynthen you have no eigen3 ;)15:56
lisitsynI'd recommend you to install it afterwards15:57
nikolisgalthanks a lot15:57
lambdaylisitsyn: hi16:02
lambdaylisitsyn: have a min?16:03
lambdayHeikoS: hi!16:03
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dhruv13jlambday: hello!18:09
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dhruv13jwiking: Hey! are you free to discuss the kdtree thing right now?19:15
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kprahwiking: Hey! Can you check this for a moment : https://github.com/kprah/shogun-opti19:45
hasitpbhatthi, I'm having difficulty dividing Dictionary Learning project into subtasks19:48
kislayHey hi HeikoS , :)19:49
@HeikoSkislay:  hi!19:49
kislayHeikoS, pickle27 doesn't comes here much often :(19:50
dhruv13jPirosB3: Hey!!19:52
dhruv13jPirosB3: how goes it? :-)19:52
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@HeikoSkislay: yeah19:56
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shogun-notifier-shogun: Saurabh :develop * f227a1c / doc/ipython-notebooks/multiclass/multiclass_reduction.ipynb: https://github.com/shogun-toolbox/shogun/commit/f227a1cd01ebba2444b5599eb525b7b873e6282719:56
shogun-notifier-shogun: extend multiclass nb19:56
shogun-notifier-shogun: Saurabh :develop * 4082c64 / doc/ipython-notebooks/multiclass/multiclass_reduction.ipynb: https://github.com/shogun-toolbox/shogun/commit/4082c644ec09a1a16e8b9ea45b884ca1117d779619:56
shogun-notifier-shogun: fix argument19:56
shogun-notifier-shogun: Saurabh :develop * a4b7540 / doc/ipython-notebooks/multiclass/multiclass_reduction.ipynb: https://github.com/shogun-toolbox/shogun/commit/a4b754066f02e55d5403936db9bae26f8b4e8bda19:56
shogun-notifier-shogun: add titles,cleanup19:56
shogun-notifier-shogun: Saurabh :develop * 9ad4aea / doc/ipython-notebooks/multiclass/multiclass_reduction.ipynb: https://github.com/shogun-toolbox/shogun/commit/9ad4aeae8c70dce4ebb98b8b6c9df51d72c2c15219:56
shogun-notifier-shogun: OvO plots19:56
shogun-notifier-shogun: Heiko Strathmann :develop * 9f0f2b7 / doc/ipython-notebooks/multiclass/multiclass_reduction.ipynb: https://github.com/shogun-toolbox/shogun/commit/9f0f2b7df1c4575a0b2c15c396781d467955027219:56
shogun-notifier-shogun: Merge pull request #2004 from Saurabh7/mcnb19:56
shogun-notifier-shogun:19:56
shogun-notifier-shogun: extend multiclass nb19:56
@HeikoSkislay: Its good to send him emails19:56
@HeikoSkislay: keep in mind we are all doing this in our free time :)19:56
kislayHeikoS, yup,19:56
@HeikoSkislay: thats why I have been unresponsive recently, other important things popped up19:56
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kislayHeikoS, no problems ! Thanks for your detailed iterations . I must have given you hard times regarding that notebook :)19:58
@HeikoSkislay: I really like the notebook20:00
@HeikoSkislay: and I think these iterations were very helpful20:00
lisitsyn1HeikoS: is that me or we are having less proposals this year? ;)20:02
@HeikoSlisitsyn I have the same feeling, but most come last minute20:03
@HeikoSlisitsyn1: I mean we are not that responsive this year20:03
@wikingkprah: next time it'd be better to send this link to the issue itself or the mailing list. since now you just had the luck that i happened to be here and seen your message.... i cannot recall what you've said about your c++ experience...20:03
@HeikoSbut that might be a personal feeling20:03
@wikinglisitsyn1: i think tomorrow :)20:03
@HeikoSwell see20:03
@wikinglisitsyn1: it'll start flooding20:03
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dhruv13jwiking: hey! are you available?20:06
@wikingdhruv13j: barely20:07
@wikingdhruv13j: email20:08
dhruv13jwiking: okay :-)20:08
dhruv13jwiking: mailing list?20:08
@wikingdhruv13j: sure that's the best place20:09
@wikinglisitsyn1: maaaaaaaaaaaaaaaan we lost berkeley python guy!!!20:09
dhruv13jwiking: cool!20:10
@wikinglisitsyn1: :(20:10
shogun-notifier-shogun: lambday :develop * 3bb6578 / src/shogun/statistics/ (4 files): https://github.com/shogun-toolbox/shogun/commit/3bb6578fb7dfa01389c54beb51bde760224efe0c20:14
shogun-notifier-shogun: Added different number of samples for quadratic time MMD20:14
shogun-notifier-shogun: lambday :develop * 8963986 / src/shogun/base/SGRefObject.h: https://github.com/shogun-toolbox/shogun/commit/896398680ebfdd1d5c56d6da2a7be795aa5568c120:14
shogun-notifier-shogun: fix include config.h in SGRefObject20:14
shogun-notifier-shogun: lambday :develop * e8484ff / src/shogun/statistics/ (2 files): https://github.com/shogun-toolbox/shogun/commit/e8484ff4ceb7c44e4eb39cdbcb42c0157afb965320:14
shogun-notifier-shogun: fix null spectrum approximation formula in quadratic time MMD20:14
shogun-notifier-shogun: Heiko Strathmann :develop * d48f117 / src/shogun/ (5 files): https://github.com/shogun-toolbox/shogun/commit/d48f11712786524757ce6464fd6422b4c954372520:14
shogun-notifier-shogun: Merge pull request #2022 from lambday/develop20:14
shogun-notifier-shogun:20:14
shogun-notifier-shogun: Added different number of samples for quadratic time MMD20:14
lambdayHeikoS: hey!20:15
@HeikoSlambday: hi, sorry someone just came to visit me20:16
lambdayHeikoS: np man! :)20:16
@HeikoSlambday: but just merged your PR, very nice stuff!20:16
@HeikoSkislay: could you send me the link to the rendered notebook again?20:16
lambdayHeikoS: thanks :) will talk to you regarding the schedule when you're free20:16
@HeikoSlambday: whats planned next?20:17
@HeikoSlambday: yeah ok, either later tonight ( I will be back for an hour later maybe) or tomorrow20:17
lambdayHeikoS: absolutely :)20:17
lisitsyn1lambday: hey20:17
lambdayHeikoS: oh and I had some ideas that I shared regarding unifying dot...20:17
lisitsyn1you wanted something?20:17
kislayHeikoS, http://nbviewer.ipython.org/gist/kislayabhi/943177020:17
lambdaylisitsyn1: hey!20:17
@HeikoSkislay: thanks!20:17
@HeikoSlambday: where? on the issue/mailinglist?20:18
@HeikoSlambday: I am currnetly going through my mails20:18
@HeikoSbut it takes some time20:18
lambdayHeikoS: lisitsyn1: I shared some ideas on the dot stuff...20:18
lisitsyn1cool let me see20:18
lambdayHeikoS: on github issues - wait let me show you https://github.com/shogun-toolbox/shogun/issues/197320:18
lambdaylisitsyn1: ^20:18
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lambdayHeikoS: lisitsyn1: if we want vector dot product to be a an implementation of linear operator class ...  then we need to change the interface...20:19
lambdayHeikoS: lisitsyn1: using another separate class hirerarchy (I used functors here) we can separate different backends20:20
lambdayHeikoS: lisitsyn1: I pasted a couple of gist for these ideas20:20
lisitsyn1haha you're using lambdas20:20
lisitsyn1that's why you are lambday20:20
lambdaylisitsyn1: my signature, eh ;)20:21
shogun-notifier-shogun: Abhijeet :develop * 7cfa149 / doc/ipython-notebooks/pca/pca_notebook.ipynb: https://github.com/shogun-toolbox/shogun/commit/7cfa1491ce046d8c72dfd3d1aaf123fbbd3cde2220:21
shogun-notifier-shogun: pca ipython notebook revised 3rd time20:21
shogun-notifier-shogun: Heiko Strathmann :develop * 7a6d2e5 / doc/ipython-notebooks/pca/pca_notebook.ipynb: https://github.com/shogun-toolbox/shogun/commit/7a6d2e5737cf1f14977c12f7a62a462474086f6820:21
shogun-notifier-shogun: Merge pull request #2028 from kislayabhi/develop20:21
shogun-notifier-shogun:20:21
shogun-notifier-shogun: pca ipython notebook revised 3rd iteration20:21
lambdaylisitsyn1: but that's just for convenience... having a separate class hirarchy that unifies different backends would be nice20:21
shogun-notifier-shogun-data: Abhijeet :master * 1bac19d / att_dataset/ (386 files): https://github.com/shogun-toolbox/shogun-data/commit/1bac19d21862dadd23440d646a2aa95c0487d91d20:21
shogun-notifier-shogun-data: added att_dataset for isse #187820:21
shogun-notifier-shogun-data: Heiko Strathmann :master * ff34862 / att_dataset/ (386 files): https://github.com/shogun-toolbox/shogun-data/commit/ff34862b9871856a08e80ec6dc3a51983fec56d120:21
shogun-notifier-shogun-data: Merge pull request #36 from kislayabhi/master20:21
shogun-notifier-shogun-data:20:21
shogun-notifier-shogun-data: added att_dataset for issue #187820:21
lambdaylisitsyn1: while front-end only have to worry about storage20:22
kislayHeikoS,  and yeah... I too felt that I was bagging down the comments by oversizing them. So I made some different arrangements for them in the notebook.20:23
lisitsyn1lambday: I don't get why did you make 'dot' a template member function20:24
@HeikoSkislay: all good, its merged now, it will soon appear on the webpage!20:24
lisitsyn1I mean we have interface already so we don't need to have it templated right20:24
lisitsyn1?20:24
lambdaylisitsyn1: well, that gives us flexibility to use different backends... right?20:25
lisitsyn1but why template?20:25
lambdaylisitsyn1: if we wanna fit this inside linear operator interface, then we might need to change that a bit20:25
lisitsyn1but you already have VectorDotProduct20:25
lisitsyn1which is virtual20:26
lisitsyn1so all you need is just a pointer to something inheriting VectorDotProduct, right?20:26
lambdaylisitsyn1: yeah... just made it a functor so...20:26
kislayHeikoS, My first ever contribution to the open source team. Feeling like a champion :) :)20:26
lisitsyn1lambday: you could use CRTP then ;)20:27
lambdaylisitsyn1: also, check this one too - https://gist.github.com/lambday/964712020:27
lambdaylisitsyn1: it hurts my eyes but fits inside linear operator20:27
lisitsyn1lambday: sometimes I recall we are speaking about dot product20:28
lisitsyn1and feel shocked :D20:28
lambdaylol...20:28
lambdaywhat's CRTP? :-/20:28
lisitsyn1well yeah I see no reason to make it linear operator20:28
lisitsyn1CRTP is20:28
lisitsyn1template <typename C> class Base { ... };20:29
lisitsyn1class Child: public Base<Child> { ... };20:29
lambdaywhoa!20:29
lisitsyn1in base you can do20:29
lisitsyn1dynamic_cast<C*>(this)->doSomething();20:30
lisitsyn1static polymorphism ;)20:30
lambdaycool!20:30
lambday:D20:30
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lambdaylisitsyn1: but another thing - I reckon you saying on irc that the way we store SGVectors is not suitable for GPUs20:31
lisitsyn1yeah20:31
lisitsyn1not really unsuitable but we need to know how20:31
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lambdaylisitsyn1: okay so how do you suggest we use the VectorDotProduct interface inside SGVector?20:34
lambdaylisitsyn1: just have a VectorDotProduct<T>* blah in its param?20:34
lisitsyn1yeah I think so20:34
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lambdaysounds good :)20:37
dhruv13jlisitsyn1: hey! I was wondering if i could get feedback on my proposal for SVM^light rewrite?20:42
lisitsyn1dhruv13j: sure let me check20:43
lisitsyn1dhruv13j: looks ok - I'll check again later but we should expect some feedback from the mentor, besser82 :)20:47
dhruv13jlisitsyn1: cool!! Thanks!20:48
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thoralfHey!20:51
dhruv13jthoralf: hello!20:53
thoralfdhruv13j:)20:56
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shogun-buildbot_build #2073 of deb2 - static_interfaces is complete: Failure [failed cmdline static]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb2%20-%20static_interfaces/builds/2073  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, Saurabh <saurabh.mahindre@gmail.com>21:16
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shogun-buildbot_build #2178 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2178  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, lambday <heavensdevil6909@gmail.com>, Abhijeet <abhijeetkislay@gmail.com>21:39
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kprahHey! Anybody?22:17
@iglesiasgkprah, yep22:20
kprahHey!22:20
@iglesiasgHello hello22:20
kprahI sent a PR regarding issue 1969. I think wiking is busy. Can you please review it?22:21
@iglesiasgkprah, I can have a look. Send me the link please22:21
@iglesiasgkprah, never mind22:22
@iglesiasgsorry22:22
@iglesiasgalready there22:22
kprahOk. Thanks.22:22
@iglesiasgkprah, aah but you opened this PR 15 minutes ago22:22
@iglesiasgwe are not so efficient you know, normally it takes more time for us to review a PR :)22:23
@iglesiasgand more if you take into account it is nearly 1k LoC22:23
kprahYeah..... it took me a bit of time to compile it on my system.22:23
kprahWell I can send a brief gist then?22:23
@iglesiasgkprah, a brief about what?22:23
kprahWell my task under issue 1969 was to unify bundle solvers.22:24
kprahI have done nothing but derived a class out of already present solvers22:24
@iglesiasgkprah, let's wait more time for wiking to have a look at this. I cannot really review this properly as I am not familiarized with these optimizers22:24
kprahOk.22:25
@iglesiasgkprah, did you discuss with wiking about how to proceed?22:25
@iglesiasgI see he asked you about that in the issue22:25
kprahYeah, i did.22:26
kprahI was not familiar with the structure before, so it took me a bit of time.22:26
kprahAre we supposed to send PR's in areas that we suppose to do only?22:28
kprahiglesiasg?22:28
@iglesiasgkprah, I am not sure what you mean22:28
@iglesiasgkprah, to do during GSoC you mean?22:28
kprahWe can do any entrace task right?22:28
@iglesiasgsure22:29
kprahone more thing.22:29
kprahI don't know, but kislay made an ipython notebook on eigenfaces.22:29
kprahiglesiasg, I am planning on adding an ipython notebook on optimizers.22:31
@iglesiasgkprah, it sounds like a nice idea22:31
kprahWill that count in terms of merged code?22:31
@iglesiasgindeed22:31
kprahOk. Can you just say if I have to write any actual cde in it?22:32
kprahIn terms of an implementation?22:32
kprahiglesiasg?22:32
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@iglesiasgkprah, see the other notebooks22:32
kprahok. thanks then.22:35
dhruv13jiglesiasg: hey! I've been testing the knn code with valgrind...22:38
@iglesiasgdhruv13j, all right22:38
@iglesiasgtell me about it22:39
dhruv13jiglesiasg: it passes without memory leaks only if i do free_feature_vector22:39
dhruv13jiglesiasg: i find that a but odd too22:39
dhruv13jiglesiasg: *bit22:39
@iglesiasgthe free_feature_vector in line 81 of nanoflann_shogun?22:40
dhruv13jiglesiasg: yes22:40
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koulanuraghii22:41
dhruv13jiglesiasg: and another quirk is that doing knn->apply() and knn->classify_for_multiple_k() causes memory leaks22:41
dhruv13jiglesiasg: i mean one or the other are harmless22:41
@iglesiasgdhruv13j, all right. I have read about the free_feature_vector. It seems to be right that you do it22:46
@iglesiasgdhruv13j, great that you actually checked it with valgrind, thanks!22:46
dhruv13jiglesiasg: and i think i just figured out why the quirk exists22:46
dhruv13jin init_distance in KNN.cpp, an SG_UNREF takes place if data is provided twice...22:47
dhruv13joh sorry, SG_UNREF(lhs) takes place22:47
dhruv13jI'll test this, and push changes22:48
dhruv13jalso, i'm done with all the style changes ;-)22:48
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@iglesiasgdhruv13j, did you push them already?22:49
@iglesiasgdhruv13j, preferably in the same commit, amending..22:49
dhruv13jiglesiasg: nope, was worried about valgrind22:49
@iglesiasgso we don't get a thousand commits for the pull request22:49
dhruv13jha ha...22:50
dhruv13jiglesiasg: can you help me generate shogun bindings for python 3.3?22:50
nikolisgalHello all i got a question does anybody now where is this class located : CLanczosEigenSolver22:51
@iglesiasgdhruv13j, what problem are you finding with it?22:51
dhruv13jiglesiasg: i have them for 2.7, which is the default python22:51
dhruv13jiglesiasg: the readme doesn't specify this :-(22:51
@iglesiasgnikolisgal, do you know about find -name or grep?22:51
kprahwiking: (are) you there?22:52
nikolisgalyes22:52
@iglesiasgdhruv13j, well, all right. But have you tried?22:52
dhruv13jiglesiasg: well, an idea i had was to change default python to 3.3...22:52
dhruv13jiglesiasg: maybe i'll try that ;-)22:52
@iglesiasgdhruv13j, you should be able to specify for cmake what python binary you want to use22:52
@iglesiasgdhruv13j, and from there it will get the right one22:53
dhruv13jiglesiasg: is there a way to make both?22:53
@iglesiasgdhruv13j, no idea. I guess no22:53
@iglesiasgI mean you can make an installation with python 2 and then another with python 322:54
dhruv13jiglesiasg: i really don't want to maintain 2 builds.... maybe create an issue?22:54
@iglesiasgI guess the second installation won't remove the files installed in the first one, but no idea if you can do it simultaneously22:54
@iglesiasgdhruv13j, sure, they are for free ;)22:54
dhruv13jiglesiasg: :D22:54
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khalednasrlisitsyn1, hey! I addressed all the comments on PR (#2016) please take a look at it whenever you have time.22:59
shogun-buildbot_build #229 of debian wheezy - memcheck is complete: Failure [failed memory check]  Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/229  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, Saurabh <saurabh.mahindre@gmail.com>23:00
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@iglesiasgdhruv13j, mm I came up with something. Let's see what is executed in travis when they want to build for python323:07
dhruv13jiglesiasg: yeah!23:07
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@iglesiasgdhruv13j, a link seems to make it. interesting23:08
dhruv13jiglesiasg: yeah, PIP_ARGS right?23:08
dhruv13jiglesiasg: it seems to work with the default python installed23:09
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@iglesiasgdhruv13j, I don't really understand how it works actually. The cmake options get the one installed by default indeed, but I don't know when this PIP_ARGS is used23:10
dhruv13jiglesiasg: the PIP_ARGS is for python 3.3 dependencies, like numpy, scipy etc...23:11
@iglesiasgdhruv13j, I see!23:12
@iglesiasgdhruv13j, there must be something different between both travis builds then if one of them takes python2 as default and the other one python323:12
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dhruv13jiglesiasg: is it line 45?23:13
@iglesiasgdhruv13j, where in the travis log?23:14
dhruv13jiglesiasg: travis seems to have a script which activates the right python version23:14
dhruv13jiglesiasg: yeah23:14
@iglesiasgdhruv13j, gem --version?23:14
dhruv13jiglesiasg: pretty cool actually!!23:14
dhruv13jiglesiasg: nope, I'm looking at python 3.3 log23:15
@iglesiasgas looking at the wrong build.. my bad23:15
@iglesiasggem is for ruby23:15
dhruv13jiglesiasg: it is "source ~/virtualenv/python3.3_with_system_site_packages/bin/activate"23:15
dhruv13jiglesiasg: *.5 is python 3.323:15
@iglesiasgdhruv13j, it makes sense yeah23:16
@iglesiasgdhruv13j, not sure how to activate it locally though.. it is probably something trivial23:16
dhruv13jiglesiasg: so the fix will involve changing CMakeLists.txt23:17
dhruv13jiglesiasg: unfortunately, i don't  know CMake that well...23:17
dhruv13jiglesiasg: maybe I'll take a look tomorrow...23:17
@iglesiasgdhruv13j, nah, but there must be a way to do it easy. An environment variable when running cmake or something like that23:19
dhruv13jiglesiasg: hmmm....23:20
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dhruv13jiglesiasg: this helps, i think... https://www.mail-archive.com/openbabel-discuss@lists.sourceforge.net/msg03151.html23:23
@iglesiasgdhruv13j, maybe, give it a try ;)23:24
dhruv13jiglesiasg: yep, on it!23:24
@iglesiasgI am already off for today23:25
@iglesiasgdhruv13j, if you manage to do it, it would be great if you can extend the documentation on how to do it23:25
dhruv13jiglesiasg: cool! bye!23:25
dhruv13jiglesiasg: and by the way, i tried append23:25
dhruv13jiglesiasg: sadly, caused a conflict, and i had to merge23:26
@iglesiasgdhruv13j, hold on a second23:26
@iglesiasgdhruv13j, I think the python3 thing is already documented...23:26
dhruv13jiglesiasg: so that's two commits instead of none23:26
dhruv13jiglesiasg: where?23:27
@iglesiasggithub.com/shogun-toolbox/shogun/blob/develop/doc/md/README_cmake.md23:27
@iglesiasgat the very end, it is inside OS X, but it might work in linux as well23:27
dhruv13jiglesiasg: yeah, i saw that, i was referring to two builds at once23:28
dhruv13jiglesiasg: I'll try the two bindings thing and update maybe... bye for now!!23:29
@iglesiasgbye bye23:29
dhruv13jiglesiasg: and thanks a lot!23:30
@iglesiasgno problem, I didn't really do anything actually ;)23:30
thoralfdhruv13j: You can "squash" commits with git using "git rebase -i HEAD~5" (for the last 5 commits) and then choose which commits you want to keep.  (pick for keep,  squash for "joining", removing lines for dropping, swapping for ...)23:30
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thoralfdhruv13j: Finally you can force a push using "git push --force origin your_branch"23:30
dhruv13jthoralf: cool!23:31
thoralfdhruv13j: You should take a git crashcourse.23:31
* dhruv13j is a git noob23:31
thoralfdhruv13j: Create a directory, enter "git init" to make it a local repository and then try to add/remove/squash/stash/rebase/merge.23:32
dhruv13jthoralf: yeah, sounds a lot better than a crash course ;-)23:32
thoralfdhruv13j: If you're on linux, you can use "qgit" or "gitk" to see what you did (just try on of both on shogun!)23:33
dhruv13jthoralf: are those diff tools?23:33
thoralfdhruv13j: No.  They are repository "browsers".23:34
thoralfWhat you mean is probably kdiff323:34
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dhruv13jthoralf: thanks for the tip!23:35
dhruv13jthoralf: qgit seems easier to use23:37
thoralfdhruv13j: Well, you should really try/learn what's possible with git.23:37
thoralfdhruv13j: Don't stay a git noob ;)23:37
* dhruv13j will learn to learn23:37
thoralfIt's not only about git/github -- it's about version control in general.23:37
dhruv13jthoralf: okay :-)23:40
thoralfhttp://git-scm.com/docs/gittutorial23:40
thoralfOr whatever.23:40
thoralfdhruv13j: How many time you can spend on GSoC now and later?  Are you working/studying?23:41
dhruv13jthoralf: I'm studying right now, and I begin working towards the end of June23:42
dhruv13jthoralf: but I'm sure I can manage the 40 Hour/week criteria23:42
dhruv13jthoralf: right now, since I'm in the final semester, I don't have too many classes or commitments23:43
thoralfdhruv13j: Well, try to find topics that you can use even after gsoc - for example git.23:43
dhruv13jthoralf: right!23:43
thoralfThen spend 1-2 days mostly on that to learn the basics, experiment with github, pushing to own repository, merging, etc.23:43
dhruv13jthoralf: yeah, it will help in the long run... I really shouldn't be messing up any more PR's because of my git stupidity23:47
thoralfdhruv13j: It's important to get your tools right.  Compiling, unit-tests, version control, etc.23:47
thoralfdhruv13j: If in doubt ask us.23:47
dhruv13jthoralf: yep...23:48
thoralfdhruv13j: Don't risk appearing stupid or lazy (but doing things that are obviously bad)... ;)23:49
thoralfDid you consult the shogun documentation yet?23:50
thoralf(It's in in the doc/ directory)23:50
dhruv13jthoralf: yeah, regarding how to ensure that PR's can be merged automatically23:50
thoralfdhruv13j: Yeah, cool.23:50
thoralfSo you already know rebase? ;)23:51
dhruv13jthoralf: yeah! I understood how that works...23:51
dhruv13jthoralf: I'm new to squashing and amending though23:51
dhruv13jthoralf: never needed them yet unfortunately23:51
thoralfAmmending is a cool thing.  As well as stashing.23:52
dhruv13jyeah, stashing and branches i like23:52
thoralfWell, I need to get some sleep.23:52
thoralfHappy hacking.23:52
dhruv13jthoralf: thanks! bye!!23:53
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--- Log closed Thu Mar 20 00:00:46 2014

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