| --- Log opened Sat Nov 15 00:00:09 2014 | ||
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| shogun-buildbot | build #933 of nightly_default is complete: Failure [failed notebooks] Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/933 blamelist: Esben Sorig <esben@sorig.eu>, Fernando Iglesias <fernando.iglesiasg@gmail.com> | 03:57 |
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| @iglesiasg | wiking: any idea if github.com/shogun-toolbox/shogun/issues/2619 can be related to swig 3? | 12:59 |
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| yalcinm | hello iglesiasg | 13:05 |
| yalcinm | hello iglesiasg, are you there now? | 13:06 |
| yalcinm | can you help me to install python-modular with Cygwin64 Terminal | 13:09 |
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| @iglesiasg | yalcinm: hey, yep here I am | 13:18 |
| @iglesiasg | yalcinm: mm I have no idea about cygwin, weren't you using ubuntu? | 13:18 |
| yalcinm | yes, I'm using ubuntu on vmware / windows 8 | 13:19 |
| yalcinm | I taught cygwin might be easier | 13:19 |
| yalcinm | ok | 13:19 |
| @iglesiasg | yalcinm: ubuntu should be easiest | 13:19 |
| @iglesiasg | yalcinm: all right, so you did a git clone of shogun somewhere, right? | 13:20 |
| yalcinm | yes | 13:20 |
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| yalcinm | lets make it clear, you mean if I have latest shogun files on my computer right? | 13:20 |
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| yalcinm | .. | 13:21 |
| @iglesiasg | yalcinm: well, I put it as clear as possible :-) | 13:21 |
| yalcinm | .. | 13:21 |
| @iglesiasg | did you do | 13:21 |
| yalcinm | yes | 13:21 |
| @iglesiasg | git clone <repository where shogun is> | 13:21 |
| @iglesiasg | it can be the main shogun repo, or a fork you may have done in github | 13:21 |
| @iglesiasg | yalcinm: http://git-scm.com/book/en/v2/Git-Basics-Getting-a-Git-Repository. What I am asking you about corresponds to the part under "clining an existing repository" | 13:22 |
| @iglesiasg | cloning* | 13:22 |
| yalcinm | clone in desktop button you mean :) | 13:23 |
| @iglesiasg | not really | 13:24 |
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| yalcinm | $ git clone https://github.com/libgit2/libgit2 | 13:25 |
| yalcinm | will I type this in the ubuntu terminal? | 13:26 |
| @iglesiasg | you should substitute that url by the one corresponding to Shogun's repository | 13:26 |
| yalcinm | of cource, ok | 13:26 |
| @iglesiasg | which you can find here: github.com/shogun-toolbox/shogun | 13:26 |
| @iglesiasg | you may have your own fork of that though, and prefer to use that one. If you don't know what a fork is, never mind for the moment and read about it later | 13:27 |
| yalcinm | ok | 13:28 |
| yalcinm | git clone https://github.com/shogun-toolbox/shogun | 13:32 |
| yalcinm | ok I made it | 13:32 |
| yalcinm | shogun is cloned | 13:32 |
| yalcinm | iglesiasg: now? | 13:33 |
| @iglesiasg | yalcinm: I understand you already installed the packages that Esben mentioned: github.com/shogun-toolbox/shogun/issues/2617#issuecomment-63066913 | 13:34 |
| yalcinm | yes | 13:35 |
| @iglesiasg | yalcinm: thus, you should be ready to follow github.com/shogun-toolbox/shogun/wiki/QUICKSTART#compile-and-install-shogun-toolbox-into-home-directory | 13:35 |
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| @iglesiasg | substitut shogun-3.1.1 by the name of the directory created by git clone | 13:35 |
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| @iglesiasg | yalcinm: include the -DPythonModular=ON if you want so (or any other interface for that matter) | 13:36 |
| yalcinm | iglesiasg: cmake -DPythonModular=ON -DCMAKE_INSTALL_PREFIX="$HOME/shogun-install" .. | 13:36 |
| yalcinm | is this enough? | 13:36 |
| yalcinm | I will create a directory named build then I will use this command | 13:37 |
| yalcinm | right? | 13:37 |
| yalcinm | iglesiasg: ? | 13:37 |
| @iglesiasg | I think you should be good to go like that, yes | 13:37 |
| @iglesiasg | mkdir build | 13:37 |
| @iglesiasg | cd build | 13:37 |
| yalcinm | yes | 13:37 |
| @iglesiasg | cmake -DPythonModular=ON -DCMAKE_INSTALL_PREFIX="$HOME/shogun-install" .. | 13:37 |
| yalcinm | what is isfinite | 13:38 |
| @iglesiasg | a function | 13:38 |
| yalcinm | I remember that last time I cmake, it was saying it is not found | 13:38 |
| yalcinm | how can I install it | 13:38 |
| @iglesiasg | shold be fine | 13:38 |
| yalcinm | there is no need to install it? | 13:38 |
| @iglesiasg | copy somewhere the output of cmake and let me see it if you are unsure whether it went all right | 13:38 |
| yalcinm | ok | 13:39 |
| @iglesiasg | with somehwere I mean either gist or pastebin | 13:39 |
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| yalcinm | iglesiasg: http://pastebin.com/NWEVB6AV | 13:41 |
| yalcinm | iglesiasg: this is the result | 13:41 |
| yalcinm | iglesiasg: is it okay? | 13:42 |
| @iglesiasg | yalcinm: it seems you don't have swig installed | 13:42 |
| @iglesiasg | not python either... | 13:42 |
| @iglesiasg | well, python libraries | 13:42 |
| @iglesiasg | I am copy+pasting from the quickstart, look | 13:43 |
| @iglesiasg | Depending on the enabled interfaces you may need: swig 2, r-base-dev, liboctave-dev, openjdk-6-jdk/openjdk-7-jdk, jblas, jblas-dev, python2.7-dev, python-numpy | 13:43 |
| @iglesiasg | since you have done PythonModular=ON | 13:43 |
| yalcinm | iglesiasg: I have it, | 13:44 |
| yalcinm | user@ubuntuvm:~/shogun/build$ sudo apt-get install swig2.0 Reading package lists... Done Building dependency tree Reading state information... Done swig2.0 is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. | 13:44 |
| @iglesiasg | that means you need swig 2 (swig is the program we use so that our C++ code can be used from e.g. Python, Java, Lua, etc), python2.7-dev, python-numpy | 13:44 |
| yalcinm | iglesiasg: when type sudo apt-get install swig2.0 | 13:44 |
| @iglesiasg | yalcinm: what? | 13:44 |
| yalcinm | iglesiasg: when type sudo apt-get install swig2.0 | 13:45 |
| yalcinm | iglesiasg: it says swig2.0 is already the newest version. | 13:45 |
| @iglesiasg | can you execute swig.20 from your terminal? | 13:45 |
| @iglesiasg | just to check that it is properly installed and visible in your path | 13:45 |
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| yalcinm | how can I check it? | 13:45 |
| yalcinm | what should I type in the terminal? | 13:46 |
| @iglesiasg | swig2.0 | 13:46 |
| @iglesiasg | and press enter | 13:46 |
| yalcinm | swig2.0 | 13:46 |
| yalcinm | iglesiasg: it says "Must specify an input file. Use -help for available options." | 13:46 |
| @iglesiasg | good sign | 13:46 |
| @iglesiasg | all right | 13:46 |
| @iglesiasg | cd .. | 13:46 |
| @iglesiasg | rm -rf build | 13:46 |
| @iglesiasg | mkdir build | 13:46 |
| @iglesiasg | cd build | 13:46 |
| @iglesiasg | cmake -DPythonModular=ON -DCMAKE_INSTALL_PREFIX="$HOME/shogun-install" .. | 13:47 |
| @iglesiasg | but install the other python packages I told you about before, please | 13:47 |
| @iglesiasg | the ones mentioned in the quickstart | 13:47 |
| yalcinm | ok | 13:47 |
| yalcinm | iglesiasg: sudo apt-get install cmake gcc g++ clang ldd wget curl tar bzip2 bash grep test sed cut awk ldd uname cat python-2.7 | 13:49 |
| yalcinm | iglesiasg: will this work? | 13:49 |
| @iglesiasg | no | 13:49 |
| @iglesiasg | python2.7-dev, python-numpy | 13:50 |
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| yalcinm | sudo apt-get install cmake gcc g++ clang ldd wget curl tar bzip2 bash grep test sed cut awk ldd uname cat python-2.7-dev python-numpy lapack3-dev atlas3-headers atlas3-base-dev libeigen3-dev r-base-dev liboctave-dev openjdk-6-jdk openjdk-7-jdk jblas jblas-dev | 13:51 |
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| yalcinm | iglesiasg: sudo apt-get install cmake gcc g++ clang ldd wget curl tar bzip2 bash grep test sed cut awk ldd uname cat python-2.7-dev python-numpy lapack3-dev atlas3-headers atlas3-base-dev libeigen3-dev r-base-dev liboctave-dev openjdk-6-jdk openjdk-7-jdk jblas jblas-dev | 13:52 |
| yalcinm | iglesiasg: ? | 13:53 |
| yalcinm | iglesiasg: ? | 13:55 |
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| @iglesiasg | yalcinm: man, haven't you already installed like half of those libraries already? | 13:55 |
| yalcinm | yes I did | 13:56 |
| @iglesiasg | try to think about what each of the things you type do, that will save you some time when things go wrong | 13:56 |
| @iglesiasg | before, I meant you only had to install python-numpy python-2.7-dev | 13:57 |
| @iglesiasg | so, sudo apt-get install python-numpy python-2.7-dev | 13:58 |
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| yalcinm | they are already installed | 14:01 |
| yalcinm | sudo apt-get install ldd | 14:01 |
| yalcinm | what is wrong with this? sudo apt-get install ldd | 14:01 |
| yalcinm | iglesiasg: it says E: Unable to locate package ldd | 14:02 |
| @iglesiasg | yalcinm: the package that contains ldd is not called ldd | 14:05 |
| @iglesiasg | I am guessing it is build-essential or any of those | 14:05 |
| @iglesiasg | not sure why are you worried about that right now though | 14:05 |
| @iglesiasg | can you use ldd? Type ldd on your terminal | 14:05 |
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| yalcinm | iglesiasg: yes I can use ldd | 14:06 |
| yalcinm | iglesiasg: what about E: Unable to locate package python-2.7-dev E: Couldn't find any package by regex 'python-2.7-dev' | 14:06 |
| @iglesiasg | yalcinm: that I spelled it wrong, it is python2.7-dev | 14:07 |
| yalcinm | iglesiasg: Package lapack3-dev is not available, but is referred to by another package. This may mean that the package is missing, has been obsoleted, or is only available from another source E: Package 'lapack3-dev' has no installation candidate | 14:08 |
| @iglesiasg | for these things, it is useful to use apt-cache search <terms to search for> | 14:08 |
| @iglesiasg | yalcinm: before installing lapack (or any other optinal dependency for that matter), I'd think if I need it | 14:09 |
| @iglesiasg | yalcinm: what do you want use Shogun for? Does that part you want it for depend on lapack? | 14:10 |
| yalcinm | I'm trying to install them because they are stated in the quickstart | 14:10 |
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| @iglesiasg | Optional libraries to improve performance: lapack3-dev, atlas3-headers, atlas3-base-dev, libeigen3-dev | 14:10 |
| yalcinm | I will use shogun for mutiple kernel learning iglesiasg | 14:10 |
| yalcinm | yes | 14:11 |
| @iglesiasg | **optional** | 14:11 |
| @iglesiasg | anyway, never mind | 14:11 |
| yalcinm | ok | 14:11 |
| yalcinm | :)) I want it to work this time | 14:11 |
| yalcinm | iglesiasg: | 14:11 |
| @iglesiasg | the lapack3-dev package thing can be because the package name has changed, it is called in a different way in yor distro, whatever other reason | 14:11 |
| yalcinm | ok should I continue with cmake .... | 14:12 |
| @iglesiasg | apt-cache search lapack-dev gives me liblapack-dev | 14:12 |
| @iglesiasg | yalcinm: in any case, if you look at your cmake log, the one you pasted before, you can see that lapack is under libraries found | 14:12 |
| @iglesiasg | which makes me wonder why are you still concerned about installing it | 14:13 |
| yalcinm | sudo apt-get install liblapack-dev is also installed | 14:13 |
| yalcinm | iglesiasg: should I continue to cmake process no? | 14:14 |
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| @iglesiasg | yalcinm: yeah, try again and see if cmake is happy with everything (swig, python complaints that appeared before) | 14:15 |
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| @iglesiasg | yalcinm: start with a clean build directory | 14:16 |
| @iglesiasg | rm -rf build | 14:16 |
| @iglesiasg | mkdir build && cd build | 14:16 |
| @iglesiasg | etc | 14:16 |
| yalcinm | iglesiasg: http://pastebin.com/42Swiryj | 14:20 |
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| @iglesiasg | yalcinm: it looks good to me now | 14:26 |
| @iglesiasg | yalcinm: what is the output of nproc? | 14:26 |
| yalcinm | what is nproc? | 14:27 |
| yalcinm | iglesiasg: output is 1 | 14:27 |
| @iglesiasg | do nproc in your terminal to see the number of processors | 14:28 |
| yalcinm | iglesiasg: output is 1 | 14:28 |
| @iglesiasg | all right, then just type make | 14:28 |
| yalcinm | make -j5 all | 14:28 |
| yalcinm | ? | 14:28 |
| yalcinm | or just make? | 14:28 |
| @iglesiasg | -j5 determines that make should be run using 5 jobs in parallel, since your machine seems to have only one processor, make is just fine | 14:29 |
| @iglesiasg | make and make all should do pretty much the same (maybe? :D | 14:29 |
| yalcinm | iglesiasg: ok | 14:30 |
| yalcinm | after this? make install iglesiasg | 14:30 |
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| yalcinm | iglesiasg: after this? will I do "make install" | 14:31 |
| yalcinm | ? | 14:31 |
| @iglesiasg | let's see how this one goes first | 14:31 |
| @iglesiasg | but yeah, as the quickstart says | 14:31 |
| yalcinm | it's very slow | 14:32 |
| yalcinm | it's %2 | 14:32 |
| yalcinm | and the time here, is 5:31 AM | 14:32 |
| yalcinm | shogun took all of my day and night | 14:32 |
| yalcinm | iglesiasg: so I will leave it, and go to sleep now | 14:33 |
| yalcinm | iglesiasg: how will I know if it is okay or not after make finishes? | 14:33 |
| @iglesiasg | if there's been no error | 14:34 |
| yalcinm | ok | 14:34 |
| yalcinm | iglesiasg: thank you very much, I will let you know on github issue page | 14:34 |
| yalcinm | have a nice day | 14:34 |
| @iglesiasg | Cool. Thank you. You too | 14:35 |
| @iglesiasg | Have a nice sleep :) | 14:35 |
| @iglesiasg | yalcinm: what timezone are you in btw? | 14:35 |
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| yalcinm | iglesiasg: Pacific Time Zone (UTC-08:00) | 14:36 |
| @iglesiasg | ah cool | 14:36 |
| @iglesiasg | I think I was in that one three weeks ago | 14:36 |
| @iglesiasg | I went to CA | 14:36 |
| yalcinm | yeah, I live in Los Angeles, where were you? | 14:37 |
| yalcinm | where do you live? | 14:37 |
| @iglesiasg | San Jose and San Francisco | 14:37 |
| yalcinm | cool | 14:37 |
| @iglesiasg | for this Google Summer of Code summit, don't know if you have heard about it | 14:37 |
| yalcinm | I guess | 14:38 |
| yalcinm | where do you live? | 14:38 |
| yalcinm | iglesiasg: ? | 14:38 |
| @iglesiasg | the Netherlands | 14:38 |
| yalcinm | cool | 14:38 |
| @iglesiasg | in the east of the country, next to the German border | 14:38 |
| yalcinm | I have friends from Netherlands | 14:39 |
| yalcinm | talk to you later | 14:39 |
| yalcinm | thank you very much for your help | 14:39 |
| @iglesiasg | cool, all right, yeah, let's do that. No problem, you are welcome | 14:39 |
| yalcinm | you're the best shogun developer :) | 14:39 |
| @iglesiasg | no way, you just got me with some free time :) | 14:40 |
| yalcinm | you ARE! | 14:40 |
| yalcinm | bye | 14:40 |
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| rajat-kant | Can someone plz help me get started with Shogun? | 21:56 |
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