| --- Log opened Thu Mar 24 00:00:43 2016 | ||
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| shogun-buildbot | build #1105 of nightly_default is complete: Failure [failed notebooks] Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/1105 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, theaverageguy <yash14123@iiitd.ac.in> | 04:07 |
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| yzshixv | hi, I need some help for install | 08:42 |
| yzshixv | I follow the instructions from the quick start | 08:43 |
| yzshixv | but in cmake step, it said that in build folder, no cmakelist.txt appears | 08:44 |
| yzshixv | I need some help | 08:44 |
| lisitsyn | I guess you do cmake without '..' | 08:44 |
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| sonne|work | lisitsyn: very polity as always :P | 09:16 |
| lisitsyn | sonne|work: what? | 09:17 |
| lisitsyn | where? | 09:17 |
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| @wiking | lisitsyn: yo | 10:59 |
| lisitsyn | wiking: h e l l o | 11:05 |
| @wiking | maaaaaaaaaaaaaaaaaaaaaaa | 11:08 |
| lisitsyn | wiking: whats up | 11:08 |
| @wiking | sometimes | 11:09 |
| @wiking | these lines makes me thing wtf is happening in jvm | 11:09 |
| @wiking | typedef typename std::aligned_storage<sizeof(T), std::alignment_of<T>::value>::type aligned_t; | 11:09 |
| @wiking | :) | 11:10 |
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| shogun-notifier- | shogun: OXPHOS :develop * 6c36c42 / / (137 files): https://github.com/shogun-toolbox/shogun/commit/6c36c422d03f4af5178aeac51eabba0287d4eb37 | 11:19 |
| shogun-notifier- | shogun: squashed - remove HAVE_EIGEN3 flags | 11:19 |
| shogun-notifier- | shogun: Heiko Strathmann :develop * 84591f6 / / (137 files): https://github.com/shogun-toolbox/shogun/commit/84591f6f8666d095a92fb0f3bbcb11d18f665af8 | 11:19 |
| shogun-notifier- | shogun: Merge pull request #3092 from OXPHOS/HAVE_EIGEN3_flag_removal | 11:19 |
| shogun-notifier- | shogun: | 11:19 |
| shogun-notifier- | shogun: HAVE_EIGEN3 flags removed | 11:19 |
| lisitsyn | wiking: why? it is usual thing in HIGH PERFORMANCE | 11:20 |
| lisitsyn | ;) | 11:20 |
| @HeikoS | hahaha :) | 11:20 |
| @HeikoS | lisitsyn: so BSD release? | 11:20 |
| @wiking | :) | 11:20 |
| shogun-buildbot | build #569 of trusty - libshogun - viennacl is complete: Failure [failed compile] Build details are at http://buildbot.shogun-toolbox.org/builders/trusty%20-%20libshogun%20-%20viennacl/builds/569 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com> | 11:21 |
| @wiking | eheeeeeeeeeeeeeeey | 11:21 |
| @wiking | :) | 11:21 |
| lisitsyn | did we already decide | 11:22 |
| lisitsyn | if we put full license | 11:22 |
| @HeikoS | btw | 11:22 |
| @HeikoS | I am against putting the full license in every file | 11:22 |
| @HeikoS | dont care | 11:22 |
| @wiking | :D | 11:22 |
| @wiking | anything is fine come on | 11:22 |
| @wiking | :) | 11:22 |
| @wiking | just script it and done | 11:23 |
| @wiking | :) | 11:23 |
| @HeikoS | agree | 11:23 |
| lisitsyn | ok | 11:23 |
| shogun-buildbot | build #3678 of deb1 - libshogun is complete: Failure [failed compile] Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/3678 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com> | 11:24 |
| @HeikoS | lisitsyn: you start this? | 11:25 |
| lisitsyn | HeikoS: can't do now but yeah I could tonight maybe | 11:25 |
| @wiking | DO IT | 11:26 |
| @wiking | lisitsyn: https://www.youtube.com/watch?v=ZXsQAXx_ao0 | 11:26 |
| @HeikoS | lisitsyn: how can we help you? | 11:26 |
| @HeikoS | I can remove the GPL only code I put in a while ago | 11:26 |
| @HeikoS | to start with | 11:26 |
| @wiking | which is gpl only code? | 11:27 |
| lisitsyn | wiking: lol | 11:27 |
| @HeikoS | CStatistics | 11:27 |
| @HeikoS | alglib | 11:27 |
| @wiking | CStatistics? | 11:27 |
| @wiking | wie so? | 11:27 |
| @HeikoS | I needed gamma distribution cdf | 11:28 |
| @HeikoS | remember I asked a while ago about using boost for that | 11:28 |
| @wiking | nooooooooooooooooooooooooooooo | 11:28 |
| @HeikoS | haha | 11:28 |
| @HeikoS | yeah i agree | 11:28 |
| @HeikoS | but I needed the cdf anyways | 11:28 |
| @HeikoS | so I just copied one over | 11:28 |
| @HeikoS | the only thing I could find was GPL code | 11:28 |
| @wiking | from ? | 11:28 |
| @HeikoS | alglib | 11:28 |
| @wiking | ah | 11:28 |
| @wiking | well | 11:28 |
| @wiking | i guess c++11 will solve your problem | 11:28 |
| @wiking | :DDDDDDDDDDDDDDDDDDDD | 11:28 |
| @HeikoS | yeah ;) | 11:29 |
| @HeikoS | so I will just put runtime error (TM) for now | 11:29 |
| @wiking | :D | 11:29 |
| @HeikoS | keep the interface | 11:29 |
| @wiking | i mean on the other fuck this whole shit | 11:29 |
| @wiking | lets throw out everything | 11:29 |
| @wiking | c++11 | 11:29 |
| @wiking | and fuck all | 11:29 |
| @wiking | :D | 11:29 |
| @wiking | and if somebody has a problem | 11:29 |
| @wiking | static compile it | 11:29 |
| @wiking | :D | 11:29 |
| @HeikoS | ok I will do this today and try to fix the buildbot | 11:29 |
| @HeikoS | haha | 11:29 |
| @HeikoS | fuck this shit (TM) | 11:29 |
| @wiking | yeah | 11:30 |
| @wiking | JUST DO IT | 11:30 |
| @wiking | lisitsyn: ^ | 11:30 |
| @wiking | :) | 11:30 |
| @HeikoS | think it should be easy to release a bsd now though | 11:30 |
| @wiking | HeikoS: i mean man | 11:30 |
| @wiking | i'm refactoring the IO of shogun | 11:30 |
| @wiking | fuck | 11:30 |
| @wiking | that is a complete fucking shit | 11:30 |
| @wiking | :D | 11:30 |
| @HeikoS | yesyesyes | 11:30 |
| @HeikoS | I know | 11:30 |
| @wiking | i mean man | 11:30 |
| @HeikoS | Its so bad | 11:30 |
| @wiking | it's sooooooooooooooo bad | 11:30 |
| @HeikoS | nobody even wants to touch it | 11:30 |
| @wiking | in the current state | 11:30 |
| @HeikoS | ever read the clone and equals code? | 11:30 |
| @wiking | that i dont see the point releasing anything | 11:30 |
| @HeikoS | 1000LoC | 11:30 |
| @wiking | clone and equals? | 11:31 |
| @wiking | que? | 11:31 |
| @wiking | :D | 11:31 |
| @HeikoS | wiking: well it works at least | 11:31 |
| @wiking | hahaha ok that works | 11:31 |
| @wiking | but the fucking IO doesn't | 11:31 |
| @wiking | :) | 11:31 |
| @wiking | it's a fucking shit | 11:31 |
| @HeikoS | yeah | 11:31 |
| @wiking | i'm not having | 11:31 |
| @wiking | kilometer long | 11:31 |
| @wiking | macros | 11:31 |
| @HeikoS | but lets just do bsd release and have peace of mind | 11:31 |
| @wiking | for c++11 | 11:31 |
| @HeikoS | and then kill all the c89 with classes code | 11:31 |
| @wiking | 98 | 11:31 |
| @wiking | :) | 11:31 |
| @HeikoS | ha! ;) | 11:31 |
| @wiking | can we wait | 11:32 |
| @wiking | after easter? | 11:32 |
| @wiking | and then release? | 11:32 |
| @wiking | i mean this weekend :P | 11:32 |
| @HeikoS | sure | 11:33 |
| @HeikoS | but we can change the bsd thing already I guess | 11:33 |
| @HeikoS | its not that much, but a few things have to be doine | 11:33 |
| @HeikoS | fine with releaseing after easter | 11:33 |
| @HeikoS | will try to check what we need before that though | 11:33 |
| @wiking | k | 11:34 |
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| travis-ci | it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/118193479 | 12:14 |
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| shogun-notifier- | shogun: Heiko Strathmann :develop * 531f6c7 / tests/unit/classifier/LDA_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/531f6c7cd376640c6f3236392ececc7a280755a1 | 13:09 |
| shogun-notifier- | shogun: make lda unit test compile again | 13:09 |
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| shogun-buildbot | build #3679 of deb1 - libshogun is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/3679 | 13:11 |
| shogun-buildbot | build #570 of trusty - libshogun - viennacl is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/trusty%20-%20libshogun%20-%20viennacl/builds/570 | 13:12 |
| shogun-buildbot | build #2818 of bsd1 - libshogun is complete: Failure [failed configure] Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2818 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com> | 13:12 |
| shogun-buildbot | build #168 of FC22 - libshogun is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/FC22%20-%20libshogun/builds/168 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com> | 13:21 |
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| Joon_ | Hello | 13:34 |
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| Joon_ | Hello | 13:35 |
| Joon_ | I am from korea | 13:36 |
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| Joon_ | Hello?? | 13:38 |
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| Joon_ | Good morning shoguns | 13:53 |
| lisitsyn | hey | 13:55 |
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| travis-ci | it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/118213488 | 13:55 |
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| @wiking | ho | 14:31 |
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| shogun-buildbot | build #621 of debian wheezy - memcheck is complete: Failure [failed memory check] Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/621 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com> | 16:44 |
| OXPHOS | Hey I'm back. So I proposed to replace all #ifdef with template in I/O but I heard @wiking is already on it? | 16:45 |
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| @wiking | OXPHOS: which ifdefs? :) | 17:40 |
| @wiking | OXPHOS: but yeah dont waste too much time on i/o | 17:41 |
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| yzshixv | Hi | 17:43 |
| @wiking | hi | 17:43 |
| yzshixv | I have a question about Shogun Toolbox installation | 17:44 |
| @wiking | yes | 17:44 |
| yzshixv | I just follow the install document and when I use cmake instruction, it said that cmake.txt file doesn't exist in the build folder | 17:45 |
| yzshixv | I use Ubuntu system | 17:45 |
| @wiking | can you paste here what's your cmake command? | 17:46 |
| yzshixv | OK please wait for a second please~ | 17:46 |
| yzshixv | I put the shogun-4.1.0 in my $HOME path, then I type in mkdir build && cd build | 17:48 |
| yzshixv | there is a new build folder in the shogun-4.1.0, but it is empty | 17:48 |
| yzshixv | then I type in cmake -DJavaModular=ON .. | 17:49 |
| @wiking | is the build directory in shogun-4.1.0/build ? | 17:50 |
| yzshixv | yes | 17:50 |
| @wiking | mmm | 17:50 |
| @wiking | and you run cmake -DJavaModular=ON .. from shogun-4.1.0/build | 17:51 |
| @wiking | ? | 17:51 |
| @wiking | are you sure about that? | 17:51 |
| yzshixv | I tried this time... but here is a lot of error here | 17:52 |
| yzshixv | CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed -- Spinlock support not found | 17:52 |
| yzshixv | CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-mp] | 17:52 |
| @wiking | yzshixv: can you copy the whole error | 17:52 |
| @wiking | to pastebin.com | 17:52 |
| yzshixv | OK | 17:52 |
| yzshixv | I copy it right now~ | 17:53 |
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| OXPHOS | I'll jump in for one sec - #ifdef such as the ones in CSVfile.cpp | 17:56 |
| OXPHOS | #define GET_VECTOR(read_func, sg_type) \ void CCSVFile::get_vector(sg_type*& vector, int32_t& len) \ { \ if (!m_line_reader->has_next()) \ return; \ | 17:56 |
| OXPHOS | etc. | 17:56 |
| @wiking | OXPHOS: ah the magical defines :))) | 17:56 |
| @wiking | OXPHOS: yeah the problem with those is actually | 17:56 |
| @wiking | inheritance | 17:56 |
| yzshixv | Hi | 17:56 |
| yzshixv | again, doesn't exsit | 17:57 |
| @wiking | hi still | 17:57 |
| yzshixv | xus114@ubuntu:~$ cd shogun-4.1.0 xus114@ubuntu:~/shogun-4.1.0$ mkdir build && cd build xus114@ubuntu:~/shogun-4.1.0/build$ cmake -DJavaModular=ON.. CMake Error: The source directory "/home/xus114/shogun-4.1.0/build" does not appear to contain CMakeLists.txt. Specify --help for usage, or press the help button on the CMake GUI. | 17:57 |
| @wiking | yzshixv: pastebin | 17:57 |
| @wiking | mmm | 17:57 |
| @wiking | your command is wrong | 17:57 |
| @wiking | it's not cmake -DJavaModular=ON.. | 17:57 |
| @wiking | but cmake -DJavaModular=ON .. | 17:57 |
| @wiking | not the space | 17:57 |
| @wiking | *note | 17:57 |
| yzshixv | Ok I will try | 17:58 |
| OXPHOS | Aha so can I propose to refactor them? Will I run into any trouble trying to do so...? | 17:59 |
| @wiking | OXPHOS: a) i'm refactoring now the io part | 17:59 |
| @wiking | b) inheritance is not possible with templates | 17:59 |
| sanuj | wiking: yo | 17:59 |
| @wiking | sanuj: waza | 17:59 |
| sanuj | i was writing my proposal for this | 18:00 |
| sanuj | https://github.com/shogun-toolbox/shogun/wiki/GSoC_2015_plugin | 18:00 |
| @wiking | yes | 18:00 |
| sanuj | wiking: i have answered all the questions in here | 18:01 |
| sanuj | https://summerofcode.withgoogle.com/organizations/5104067932061696/ | 18:01 |
| yzshixv | Hi, I have pasted my error in http://pastebin.com/sCa782b5 | 18:01 |
| yzshixv | still error | 18:01 |
| @wiking | sanuj: ? | 18:02 |
| sanuj | wiking: i was planning to include a time line for the project | 18:02 |
| sanuj | needed help with that | 18:02 |
| @wiking | yzshixv: i think you are missing compilers | 18:02 |
| yzshixv | which one? | 18:02 |
| @wiking | simple c compiler | 18:03 |
| @wiking | and c++ | 18:03 |
| yzshixv | gcc? | 18:03 |
| yzshixv | I have gcc in ubuntu | 18:03 |
| OXPHOS | Okay I got it. So I'll focus on linalg and serialization. Thanks! | 18:03 |
| @wiking | g++ --version | 18:03 |
| @wiking | what's the output for that | 18:03 |
| @wiking | ? | 18:03 |
| @wiking | sanuj: i dont see your proposal | 18:04 |
| joon_ | hello shogun. | 18:04 |
| @wiking | joon_: helo | 18:04 |
| sanuj | wiking: i just shared it :P | 18:05 |
| sanuj | sorry | 18:05 |
| sanuj | it's incomplete | 18:05 |
| @wiking | where? | 18:05 |
| @wiking | still cannot find it | 18:05 |
| sanuj | on summer of code site | 18:05 |
| yzshixv | Ok, thank you, no error, I will try the example! | 18:05 |
| yzshixv | Thank you! | 18:05 |
| sanuj | wiking: here is the google doc link | 18:05 |
| @wiking | yzshixv: what's the output? | 18:05 |
| @wiking | of g++ | 18:05 |
| sanuj | wiking: https://docs.google.com/document/d/1vaf6S5WDKRQPXXt0KmTl9jbh6ln2IxLe7dkrfVoBP1Y/edit# | 18:05 |
| @wiking | g++ --version | 18:06 |
| sanuj | wiking: it's not complete yet | 18:06 |
| sanuj | wiking: but would be good if you could tell me what else to include | 18:06 |
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| @wiking | sanuj: yeah most important is missing | 18:07 |
| @wiking | timeline | 18:07 |
| @wiking | what and how | 18:07 |
| yzshixv | g++ (Ubuntu 4.8.4-2ubuntu1~14.04.1) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. | 18:07 |
| sanuj | wiking: i have read the design draft written by lisitsyn | 18:08 |
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| sanuj | wiking: and other links in the project wiki page | 18:09 |
| @wiking | yzshixv: ok so i would suggest you better pull the latest develop from git | 18:09 |
| @wiking | sanuj: ok cool | 18:09 |
| sanuj | so my what and how would be mostly that only | 18:09 |
| @wiking | then please write down a plan | 18:09 |
| @wiking | mmm | 18:09 |
| @wiking | that needs to be planned | 18:09 |
| @wiking | into a timeline | 18:10 |
| sanuj | wiking: okay, i'll write it and ping you again | 18:10 |
| sanuj | after some time | 18:10 |
| @wiking | ok | 18:10 |
| sanuj | wiking: thanks | 18:11 |
| yzshixv | Hi, another question and error | 18:17 |
| yzshixv | after the cmake instruction, I just use $make, here is another error http://pastebin.com/ZHH5hKa8 | 18:18 |
| yzshixv | stop in 5% in make | 18:18 |
| @wiking | mmm we are missing some macros | 18:20 |
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| @wiking | but you are definitely missing a lot of library dependencies there | 18:20 |
| @wiking | like lapack | 18:20 |
| yzshixv | can you give me a list for libraries? | 18:21 |
| @wiking | it's there | 18:21 |
| @wiking | in the help | 18:21 |
| @wiking | as well as in the cmake output | 18:21 |
| yzshixv | Yeah, all of these libraries do I have to install? | 18:21 |
| @wiking | not all | 18:22 |
| @wiking | but some at least | 18:22 |
| @wiking | like eigen | 18:22 |
| yzshixv | ok, I only need the necessary ones | 18:23 |
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| joon__ | i submitted my first draft about GSOC, can you review my draft? | 18:32 |
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| joon8409 | hello | 19:02 |
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| yzshixv | Hi，a question, can I use OpenCL on my vmware workstation? | 19:11 |
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| yzshixv | Hi, I have a question | 19:16 |
| yzshixv | what library should I install? | 19:16 |
| yzshixv | http://pastebin.com/JCT1Ay94 | 19:16 |
| yzshixv | I still have some errors when I do make instruction | 19:17 |
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| Subjoon | Hello shogun I submitted my proposal as draft name with myeongjoon | 19:26 |
| Subjoon | Can you comment about it?? | 19:27 |
| @HeikoS | Subjoon: great, we will have a look and comment | 19:27 |
| @HeikoS | it is a bit last minute to give comments, but I will see what we can do | 19:27 |
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| yzshixv | Hi | 19:29 |
| sanuj | HeikoS: yo | 19:32 |
| @HeikoS | sanuj: jojo | 19:32 |
| sanuj | for the plugins project | 19:32 |
| sanuj | will we be doing it on a separate branch and merge it at the end when all of the code is completed? | 19:33 |
| sanuj | sergey started 'narrow_interface' | 19:33 |
| @HeikoS | sanuj: yes thats the early prototype | 19:34 |
| @HeikoS | sanuj: you applying for the plugin project? | 19:35 |
| @HeikoS | sorry I currently lost track a bit | 19:35 |
| sanuj | HeikoS: yeah :P | 19:35 |
| sanuj | :) | 19:35 |
| @HeikoS | good, Ill keep it in mind :) | 19:35 |
| sanuj | HeikoS: i'll remind you ;) | 19:35 |
| @HeikoS | sanuj: yeah good | 19:36 |
| @HeikoS | but yes definitely that is the plan | 19:36 |
| @HeikoS | start with a prototype, implement all functions we want, and then transition | 19:36 |
| @HeikoS | the transition will be scary | 19:36 |
| sanuj | HeikoS: i know | 19:36 |
| sanuj | there is lots of code :O | 19:37 |
| sanuj | HeikoS: almost all of my project plan is based on the wiki page that sergey wrote | 19:37 |
| sanuj | is that fine? | 19:37 |
| @HeikoS | I think it is, | 19:37 |
| @HeikoS | what is really important is to make things concrete | 19:37 |
| sanuj | HeikoS: okay | 19:38 |
| sanuj | HeikoS: i'll also keep a second proposal for approximate kernels | 19:38 |
| @HeikoS | not just say "I plan to do this", but "I plan to do this, which consists of steps a,b,c,d,e,f, and I have sent a PR for a and b, here is a class diagram for c" | 19:38 |
| @HeikoS | you get what I mean | 19:38 |
| @HeikoS | initiative is key, and a concrete plan | 19:39 |
| sanuj | HeikoS: okay | 19:39 |
| @HeikoS | the best projects are those which are planned as detailed as possible | 19:39 |
| sanuj | do i include pseudo-code snippets in proposal? | 19:39 |
| @HeikoS | no, but links to issues, code snippets gists, and PRs | 19:40 |
| @HeikoS | so evidence that supports your plans that is publicly visible | 19:40 |
| sanuj | definitely | 19:40 |
| sanuj | i don't have any PRs explicitly for plugins | 19:41 |
| @HeikoS | sanuj: you have some others at least | 19:43 |
| @HeikoS | sanuj: btw you still have time to send PRs and snippets for that after the deadline | 19:43 |
| sanuj | HeikoS: sure | 19:43 |
| @HeikoS | but of course the earlier the better | 19:43 |
| @HeikoS | the project is hard-core we just need to make sure it will be a success :) | 19:44 |
| @HeikoS | but thats also a good motivation | 19:44 |
| sanuj | i don't have any PRs for plugins bcz i didn't see any plugin related work in Shogun | 19:44 |
| sanuj | I thought you guys would initiate it and then I could get in | 19:44 |
| sanuj | HeikoS: yeah, the project needs to be a success, it's very important for shogun | 19:45 |
| @HeikoS | sure that is fine | 19:46 |
| @HeikoS | we dont need PRs merged necessarily | 19:46 |
| @HeikoS | snippets and design drafts are fine | 19:46 |
| @HeikoS | a concrete list of steps | 19:46 |
| @HeikoS | a prototype (not in shogun code) | 19:46 |
| @HeikoS | all that helps | 19:47 |
| sanuj | okay | 19:47 |
| sanuj | btw i updated the cookbook PR | 19:47 |
| sanuj | https://github.com/shogun-toolbox/shogun/pull/3112 | 19:48 |
| AlexIalongo | hello everyone! I am also an applicant for GSoC 2016 (github: ialong) and really keen on the large-scale GP project | 19:48 |
| AlexIalongo | HeikoS: sorry to jump in the conversation I also have something to ask about cookbooks | 19:49 |
| @HeikoS | AlexIalongo: jojo! | 19:49 |
| @HeikoS | sanuj: cool will check soon | 19:50 |
| AlexIalongo | HeikoS: it seems they do not get added to the index automatically | 19:50 |
| @HeikoS | sanuj: btw sorry for being slow, there is quite a lof of things to do | 19:50 |
| AlexIalongo | HeikoS: jojojo! | 19:50 |
| sanuj | HeikoS: yeah i know :) | 19:50 |
| @HeikoS | AlexIalongo: no if you add a new folder, you need to change the index.rst file | 19:50 |
| AlexIalongo | HeikoS: ah gotcha | 19:50 |
| sanuj | HeikoS: will be back in a few minutes | 19:50 |
| @HeikoS | like add new folder for GP | 19:51 |
| AlexIalongo | cool will send in a PR soon then | 19:51 |
| @HeikoS | gp | 19:51 |
| @HeikoS | and then put the examples in there | 19:51 |
| @HeikoS | gp_regression_exact | 19:51 |
| AlexIalongo | that's exactly what I did | 19:51 |
| @HeikoS | gp_classification_logit | 19:51 |
| @HeikoS | and then put the gp folder in the index | 19:51 |
| AlexIalongo | cool, I'm on it | 19:51 |
| @HeikoS | good stuff | 19:52 |
| AlexIalongo | thanks! By the way, about the benchmarking, should I use MLPACK in the end? | 19:52 |
| @HeikoS | yes thats the plan | 19:52 |
| @HeikoS | but maybe check the issue | 19:52 |
| @HeikoS | yorkerlin has been doing tons of things thre | 19:52 |
| @HeikoS | he will show his benchmarks soon | 19:52 |
| AlexIalongo | I did, already some interesting findings re prediction times | 19:52 |
| AlexIalongo | wonder why we are losing to sklearn there | 19:53 |
| AlexIalongo | what should I focus on so I don't overlap with what yorkerlin is doing? | 19:53 |
| @HeikoS | AlexIalongo: good, please share them | 19:53 |
| @HeikoS | and discuss with yorkerlin | 19:53 |
| @HeikoS | he is the mentor | 19:53 |
| AlexIalongo | cool | 19:54 |
| @HeikoS | submitting a PR to the benchmark project that identifies a bottleneck would be good first step | 19:54 |
| @HeikoS | fixing it the second | 19:54 |
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| @HeikoS | AlexIalongo: see discussion with yorkerlin on the fulls tack of things until the GP has learned ML2 parameters | 19:55 |
| @HeikoS | make sure to communicate with Wu | 19:56 |
| @HeikoS | he writes lots of code quickly | 19:56 |
| AlexIalongo | great | 19:56 |
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| c4goldsw | Hey guys, I just submitted a draft proposal for GSoC: https://docs.google.com/document/d/1IXkTmKqRmXVASDmq4NaQBjDHRdXhfm0_nFrbW_PDt7E/edit . Could someone please look over it? | 20:01 |
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| shogun-notifier- | shogun: lambday :feature/bigtest * db779e9 / src/shogun/statistical_testing/internals/ (2 files): https://github.com/shogun-toolbox/shogun/commit/db779e93ecd0f500d4ab7c785a1b1a4d2b9eaecb | 20:33 |
| shogun-notifier- | shogun: shogunized data manager src | 20:33 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/alglib_removal * b37b104 / src/shogun/mathematics/Statistics.cpp,src/shogun/mathematics/Statistics.h: https://github.com/shogun-toolbox/shogun/commit/b37b104bd069a33461da1d31447e2104406fd90f | 20:33 |
| shogun-notifier- | shogun: refactor covariance_matrix to not use lapack but eigen3 | 20:33 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/alglib_removal * a23ad20 / src/shogun/mathematics/Statistics.cpp,src/shogun/mathematics/Statistics.h: https://github.com/shogun-toolbox/shogun/commit/a23ad20ab7367ac0b20c6659fa914a593e5bccbd | 20:33 |
| shogun-notifier- | shogun: remove gpl codes, replace with runtime errors, get rid of lapack dependency | 20:33 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/alglib_removal * 42fa889 / src/shogun/mathematics/Statistics.h: https://github.com/shogun-toolbox/shogun/commit/42fa8894f2198afc99b9ce88667022a1f7324a0a | 20:33 |
| shogun-notifier- | shogun: re-add some methods needed to keep structure alive | 20:33 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/alglib_removal * bff4fb2 / examples/undocumented/libshogun/statistics.cpp: https://github.com/shogun-toolbox/shogun/commit/bff4fb278a9e9f8f7c6eafc3ff3c0e7efe012c6f | 20:38 |
| shogun-notifier- | shogun: remove example that is in fact a unit test. | 20:38 |
| sanuj | HeikoS: the most time consuming task in the plugin framework will be to migrate the whole code to the plugin architecture right? | 20:45 |
| sanuj | and not finalizing the prototype for the plugin framework and writing the base interface that all plugins will have to follow? | 20:45 |
| @HeikoS | wiking: ping | 21:07 |
| @HeikoS | sanuj: yes | 21:07 |
| @HeikoS | but most crucial will be designing the ML api we want | 21:07 |
| @HeikoS | this can be planned neatly before | 21:08 |
| @HeikoS | and then the working prototype | 21:08 |
| @HeikoS | lisitsyn: ping | 21:08 |
| @HeikoS | sonney2k: ping | 21:08 |
| sanuj | HeikoS: okay | 21:08 |
| lisitsyn | yes | 21:08 |
| lisitsyn | hey | 21:08 |
| sanuj | HeikoS: thanks for your comments on my proposal | 21:08 |
| @HeikoS | lisitsyn: hi | 21:08 |
| @HeikoS | lisitsyn: I have a question | 21:08 |
| @HeikoS | about boost | 21:08 |
| @HeikoS | lisitsyn: we dont like to use it, because .... ? | 21:09 |
| @HeikoS | what are the details here? | 21:09 |
| lisitsyn | HeikoS: uhmm okay it is bloated | 21:09 |
| @HeikoS | and I just realised, that moast of the library is header only | 21:09 |
| lisitsyn | if you take one boost library you take whole boost | 21:09 |
| @HeikoS | is that true? | 21:09 |
| @HeikoS | can't I just take say the mathematics part? | 21:09 |
| lisitsyn | quite a lot of them are header only | 21:09 |
| lisitsyn | not sure about mathematics | 21:09 |
| lisitsyn | but if you grab maths stuff | 21:10 |
| @HeikoS | since I just compiled a shogun program using boost without linking against it | 21:10 |
| lisitsyn | you take whole boost | 21:10 |
| @HeikoS | lisitsyn: I see | 21:10 |
| @HeikoS | so no way to JUSt grab math stuff? | 21:10 |
| lisitsyn | it is modular yet monolithic | 21:10 |
| @HeikoS | lisitsyn: nobody solved this problem yet? | 21:10 |
| lisitsyn | HeikoS: well if you take math | 21:10 |
| @HeikoS | lisitsyn: we run into a problem with some low level stats modules | 21:11 |
| lisitsyn | you take math + core boost | 21:11 |
| @HeikoS | if we go bsd | 21:11 |
| @HeikoS | I see | 21:11 |
| @HeikoS | ok thats a good reason | 21:11 |
| @HeikoS | the only serious lib for stat basics is gnu | 21:11 |
| lisitsyn | HeikoS: it is quite slow to compile | 21:11 |
| @HeikoS | and alglib which is GPL | 21:11 |
| lisitsyn | HeikoS: what do you need? | 21:11 |
| @HeikoS | inverse_normal_cdf for example | 21:12 |
| @HeikoS | the alglib code for them is super messy | 21:12 |
| @HeikoS | see CStatistics.cpp | 21:12 |
| @HeikoS | and all is GPL | 21:12 |
| @HeikoS | lisitsyn: see my feaure branch | 21:12 |
| @HeikoS | I removed all GPL from statistics there | 21:12 |
| @HeikoS | but now GPs dont work anymore ;) | 21:12 |
| @HeikoS | boost math has all we ever need | 21:13 |
| @HeikoS | and is well oimplemented and tested | 21:13 |
| @HeikoS | pitty that we cant cut that out | 21:13 |
| lisitsyn | HeikoS: well I am not *that* against boost | 21:13 |
| @HeikoS | lisitsyn: I know the others are | 21:13 |
| lisitsyn | but there are some disadvantages | 21:13 |
| @HeikoS | I am not *that* for it | 21:14 |
| @HeikoS | just want these functions | 21:14 |
| lisitsyn | yeah I see | 21:14 |
| @HeikoS | lisitsyn: maybe we can steal from scipy | 21:14 |
| @HeikoS | that is bsd | 21:14 |
| sanuj | HeikoS: we would also need to change the notebooks and cookbook pages with the new api | 21:16 |
| @HeikoS | lisitsyn: ah nice fortran code | 21:16 |
| @HeikoS | sanuj: yes but that is not hard | 21:16 |
| sanuj | HeikoS: if we have different plugins then how will the installation work | 21:17 |
| @HeikoS | sanuj: base shogun will be fixed | 21:18 |
| @HeikoS | sanuj: plugins can be added | 21:18 |
| sanuj | yeah | 21:18 |
| @HeikoS | you install only the plugins/classes you want | 21:18 |
| @HeikoS | you can have dependencies | 21:18 |
| @HeikoS | that is, I want KRR ,it is possible to automagically then realise what it depends on | 21:18 |
| @HeikoS | we need some way to specify such things | 21:18 |
| sanuj | HeikoS: but like in case of python - pip install shogun-xxx-plugin | 21:18 |
| lisitsyn | what I am sure we don't want to develop a package manager :D | 21:19 |
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| travis-ci | it's lambday's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/118319747 | 21:19 |
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| lisitsyn | but maybe it is not that hard.. | 21:20 |
| @HeikoS | lisitsyn: check CStatistics.cpp man | 21:20 |
| @HeikoS | sanuj: installation comes second | 21:20 |
| @HeikoS | first is the plugins | 21:20 |
| @HeikoS | we might do the installation in another go | 21:20 |
| lisitsyn | HeikoS: not sure what to look for | 21:21 |
| @HeikoS | lisitsyn: inverse_normal_cdf | 21:22 |
| @HeikoS | for example | 21:22 |
| @HeikoS | the one with only one arugment | 21:22 |
| lisitsyn | ok I see | 21:22 |
| @HeikoS | lisitsyn: grep the CStatistics.h for alglib to find the routines | 21:22 |
| @HeikoS | that need replacement | 21:22 |
| @HeikoS | lisitsyn: any ideas on this? | 21:23 |
| @HeikoS | lisitsyn: these functions are not available anywhere | 21:23 |
| @HeikoS | alblib was the only place where I could find them back then | 21:23 |
| lisitsyn | no I don't know neither | 21:23 |
| @HeikoS | matlab has them | 21:24 |
| @HeikoS | scipy as well | 21:24 |
| @HeikoS | so they should be there | 21:24 |
| @HeikoS | lisitsyn: oh yes, and boost | 21:24 |
| lisitsyn | HeikoS: some parts of boost are more easy to extract | 21:25 |
| lisitsyn | it depends | 21:25 |
| lisitsyn | I haven't checked math | 21:25 |
| @HeikoS | lisitsyn: would you mind checking? | 21:25 |
| @HeikoS | since I have no idea | 21:25 |
| @HeikoS | if we had a boost math only, then we would be good I think | 21:25 |
| @HeikoS | lisitsyn: is boost stable? | 21:27 |
| lisitsyn | HeikoS: in what sense? | 21:27 |
| @HeikoS | lisitsyn: I just wonder how bad it actually is to use it | 21:27 |
| @HeikoS | api etc | 21:27 |
| lisitsyn | stable - no changes over time? | 21:27 |
| @HeikoS | lisitsyn: since all I had to do to use the normal_cdf inverse of boost was to add one hadder | 21:27 |
| @HeikoS | header | 21:27 |
| @HeikoS | nothing els | 21:27 |
| @HeikoS | lisitsyn: if we dont need to link against things | 21:28 |
| @HeikoS | we can just ship the necessary header files | 21:28 |
| @HeikoS | I wonder what the problem would be here | 21:28 |
| @HeikoS | http://www.mlpack.org/trac/ticket/223 | 21:28 |
| lisitsyn | HeikoS: well, what I see is | 21:29 |
| lisitsyn | you always grab most of the boost core | 21:29 |
| lisitsyn | and compilation speed | 21:29 |
| @HeikoS | http://webcache.googleusercontent.com/search?q=cache:h7lclvHnCbQJ:www.mlpack.org/trac/ticket/223+&cd=6&hl=en&ct=clnk&gl=us | 21:29 |
| @HeikoS | ok I see | 21:29 |
| @HeikoS | lisitsyn: so what would be the alternative | 21:30 |
| @HeikoS | lisitsyn: ok i will just implement a few by hand | 21:30 |
| @HeikoS | ewfc is in c++ that already helps a lot | 21:30 |
| @HeikoS | gotta go | 21:32 |
| @HeikoS | see you | 21:32 |
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| sanuj | lisitsyn: hey | 21:33 |
| sanuj | got time? | 21:33 |
| lisitsyn | sanuj: yeah | 21:34 |
| sanuj | lisitsyn: i was writing the timeline for the plugin proposal | 21:34 |
| sanuj | can you view the proposal? | 21:34 |
| lisitsyn | let me find it | 21:35 |
| sanuj | lisitsyn: i can paste the google doc link here | 21:40 |
| sanuj | lisitsyn: https://docs.google.com/document/d/1vaf6S5WDKRQPXXt0KmTl9jbh6ln2IxLe7dkrfVoBP1Y/edit# | 21:42 |
| lisitsyn | sanuj: ok thanks | 21:45 |
| sanuj | lisitsyn: the timeline is in the end | 21:46 |
| sanuj | plan and timeline is not complete | 21:47 |
| sanuj | lisitsyn: is dynaplugz the final plugin framework for shogun? | 21:47 |
| lisitsyn | sanuj: no, I don't think so | 21:48 |
| sanuj | lisitsyn: so i was thinking i can write a small github repo for the plugin framework demonstration and include it in my proposal | 21:48 |
| sanuj | i can update the github repo even after the proposal deadline and we can do the proof of concept for Tags and other stuff in that | 21:50 |
| lisitsyn | sanuj: yes it is a good idea | 21:51 |
| lisitsyn | sanuj: ok put some comments | 21:55 |
| sanuj | lisitsyn: yes i saw | 21:55 |
| sanuj | thanks :) | 21:56 |
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| travis-ci | it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/118319824 | 22:00 |
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| sanuj | lisitsyn: what do we expect till the mid term evaluation? :) | 22:00 |
| sanuj | api design and plugin framework has been finalized. code migration has begun to the new framework? | 22:01 |
| lisitsyn | sanuj: yeah probably | 22:01 |
| curiousguy13 | lisitsyn, hey, could you please review my proposal too? :) | 22:02 |
| lisitsyn | curiousguy13: yeah for sure | 22:02 |
| curiousguy13 | cool | 22:03 |
| sanuj | lisitsyn: what all things can i demonstrate in the github repo? | 22:03 |
| lisitsyn | curiousguy13: uhm how do I identify it | 22:03 |
| lisitsyn | sanuj: don't get it | 22:03 |
| sanuj | lisitsyn: like how should i go about doing it | 22:03 |
| curiousguy13 | lisitsyn, i'll send you the link | 22:04 |
| lisitsyn | sanuj: well you can put a link a say you're going to start working on a prototype here | 22:04 |
| sanuj | lisitsyn: yeah | 22:05 |
| sanuj | but in the github repo what all things shall i code that we need to finalize the plugin framework | 22:06 |
| lisitsyn | sanuj: ah ok something working ;) | 22:06 |
| lisitsyn | proof of concept | 22:06 |
| sanuj | lisitsyn: i'll implement stuff from your wiki page | 22:07 |
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| sanuj | lisitsyn: thanks for your feedback :) | 22:21 |
| sanuj | going to sleep | 22:22 |
| sanuj | see ya! | 22:22 |
| curiousguy13 | lisitsyn, hey , thanks for your feedback. I really appreciate it! | 22:26 |
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| lisitsyn | you're welcome | 22:26 |
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| travis-ci | it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/118321137 | 22:31 |
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| c4goldsw | Hey, I got my draft finished a few hours ago, is anyone around to look at it? | 22:37 |
| c4goldsw | https://docs.google.com/document/d/1IXkTmKqRmXVASDmq4NaQBjDHRdXhfm0_nFrbW_PDt7E/edit | 22:37 |
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| --- Log closed Fri Mar 25 00:00:45 2016 | ||
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