IRC logs of #shogun for Wednesday, 2016-06-29

« Tuesday, 2016-06-28 Index Thursday, 2016-06-30 »
--- Log opened Wed Jun 29 00:00:00 2016
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OXPHOSJun 28th - finish shareboost/gp cookbook. refactored linalg/restructured unittests/added alignment/03:30
@wikingok so \p/04:30
@wiking\o/04:30
shogun-buildbotbuild #30 of memleak - valgrind is complete: Failure [failed memory check generate html]  Build details are at http://buildbot.shogun-toolbox.org/builders/memleak%20-%20valgrind/builds/30  blamelist: Fredrik Hallgren <fredrik.hallgren@ucl.ac.uk>, OXPHOS <engelzora@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Viktor Gal <viktor.gal@maeth.com>, Heiko Strathmann05:41
shogun-buildbot<heiko.strathmann@gmail.com>, Saurabh7 <saurabh.mahindre@gmail.com>05:41
shogun-buildbotbuild #1031 of nightly_none is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_none/builds/1031  blamelist: Fredrik Hallgren <fredrik.hallgren@ucl.ac.uk>, OXPHOS <engelzora@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Viktor Gal <viktor.gal@maeth.com>, Heiko Strathmann <heiko.strathmann@gmail.com>, Saurabh705:47
shogun-buildbot<saurabh.mahindre@gmail.com>05:47
shogun-buildbotbuild #1161 of nightly_default is complete: Failure [failed test test_1 notebooks]  Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/1161  blamelist: Fredrik Hallgren <fredrik.hallgren@ucl.ac.uk>, OXPHOS <engelzora@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Viktor Gal <viktor.gal@maeth.com>, Heiko Strathmann06:45
shogun-buildbot<heiko.strathmann@gmail.com>, Saurabh7 <saurabh.mahindre@gmail.com>06:45
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sanujB-ZDM-G, there?11:55
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sanujB-ZDM-G, there?13:30
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@wikingHeikoS: y014:04
@HeikoSwiking: joo14:04
sanujB-ZDM-G, is this the correct way to compare storage?14:53
sanujbool equals(void** storage, void** other_storage) const14:53
sanuj        {14:53
sanuj            T typed_storage = *(reinterpret_cast<T*>(storage));14:53
sanuj            T typed_other_storage = *(reinterpret_cast<T*>(other_storage));14:53
sanuj            return typed_storage == typed_other_storage;14:53
sanuj        }14:53
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shogun-notifier-shogun: OXPHOS :develop * 91a3199 / doc/cookbook/source/ (2 files): https://github.com/shogun-toolbox/shogun/commit/91a31993da44397cf7d67ecea81fcae821f1004a15:18
shogun-notifier-shogun: shareboost cookbook minor fix15:18
shogun-notifier-shogun: Heiko Strathmann :develop * b951918 / doc/cookbook/source/ (2 files): https://github.com/shogun-toolbox/shogun/commit/b951918d29ecb6c013e01875c7b5beab37aceda315:18
shogun-notifier-shogun: Merge pull request #3318 from OXPHOS/cookbook_shareboost15:18
shogun-notifier-shogun:15:18
shogun-notifier-shogun: shareboost cookbook minor fix15:18
shogun-notifier-shogun: OXPHOS :develop * 76f89c1 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/76f89c121454ac2a06fa5db71e5e0977659d78b615:19
shogun-notifier-shogun: gp classifier - cookbook and integration test15:19
shogun-notifier-shogun: Heiko Strathmann :develop * 9e7592d / / (3 files): https://github.com/shogun-toolbox/shogun/commit/9e7592d7b028835d388c5bda508a62cd4cf0b87615:19
shogun-notifier-shogun: Merge pull request #3311 from OXPHOS/cookbook_gpclassifier15:19
shogun-notifier-shogun:15:19
shogun-notifier-shogun: cookbook - gaussian process classifier15:19
shogun-buildbotbuild #2915 of bsd1 - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2915  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com>15:26
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shogun-buildbotbuild #1270 of precise - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/1270  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com>15:27
@HeikoSOXPHOS: jo15:30
OXPHOSHeikoS: hey15:31
@HeikoSOXPHOS: remove the aligned again?15:31
@HeikoSback in 3 mins15:31
OXPHOSHeikoS: it is giving all the meta example errors. I just removed the ones in SGVector15:32
OXPHOSHeikoS: I was trying to test is at local. But it seems the linalg branch gives me other trouble to build the meta examples15:33
@HeikoSre15:36
@HeikoSOXPHOS: meta examples?15:39
@HeikoSOXPHOS: I dont understand arent they kind of unrelated?15:39
@HeikoSOXPHOS: btw pls remember to send a daily update from now on, as mentioned in email15:39
@HeikoSOXPHOS: also, do you have the revised timeline somehwere?15:39
@HeikoSsanuj: hi! revised timeline? :)15:40
sanujHeikoS, no :/15:40
sanujneed to talk to sergey about it15:40
OXPHOSHeikoS: Yep I removed the other stuff15:40
sanuji have no idea how much time plugins will take15:40
@HeikoSsanuj: more that we have15:40
OXPHOSHeikoS: I sent an update 12h ago15:40
@HeikoSOXPHOS: ah ok15:41
@HeikoSsorry :)15:41
@HeikoSsanuj: you can already structure things yourself15:41
sanujHeikoS, and then we have to make other classes in shogun support tags as well15:41
@HeikoSand based on how much time it took, you can estimate whats is realistic15:41
OXPHOSHeikoS: it's okay. I think only wiking was here ..15:41
@HeikoSsanuj: for plugins, we could think about only having a prototype maybe15:41
@HeikoSOXPHOS: you sent to IRC?15:41
@HeikoSOXPHOS: can you from now on send them to rahul, wiking, me via email daily?15:42
@HeikoSor the list15:42
@HeikoSstand up, just via email15:42
OXPHOSHeikoS: yep. np!15:42
@HeikoSOXPHOS: thanks, helps a lot in keeping things together!15:42
@HeikoSOXPHOS: and the timeline is where?15:43
sanujHeikoS, so a working prototype for plugin architecture15:44
@HeikoSsanuj: yeah but this should contain like 15 points15:45
sanujthen when we migrate classes to plugins, also take care of tags15:45
@HeikoSsanuj: details!15:45
@HeikoSsanuj: getting that tags merged and working in all of shogun should be another focus point15:45
OXPHOSHeikoS: https://docs.google.com/document/d/1eozTFX_mgKx3eXQfQnP07Rxi8GYKfGYdu_qvGpLRnjw/edit?usp=sharing15:45
@HeikoSsanuj: and then some base class structure15:45
@HeikoSOXPHOS: thanks!15:45
OXPHOSHeikoS: I dont have details for cereal yet..15:45
@HeikoSOXPHOS: suggestion:15:45
@HeikoSshorten the lnalg stuff. We are almost done and all we now need is to refactor the existing implementations to the new interface, that should only take a week15:46
@HeikoSand then a week clean up maybe max15:46
@HeikoSThen, cerealk15:46
@HeikoSwe should try to free as much time as possible for that15:46
@HeikoSso I would prefer to get the linalg done asap15:46
@HeikoSmost work is done there anyways15:47
@HeikoSOXPHOS: think that is good15:47
@HeikoSOXPHOS: and we definitely want the cereal stuff to work15:47
@HeikoSOXPHOS: smart pointer can go I think, or optional, I dont think it is realistic15:47
OXPHOSHeikoS: sure thx. I already have some linalg methods working [at local] now and I'll pull once the current patch is merged15:47
sanujHeikoS, i'll update my timeline tonight15:47
@HeikoSOXPHOS: but good otherwise15:47
sanujand then we can refine it15:47
@HeikoSOXPHOS: great, then you can send patches of the methods + tests one by one15:48
@HeikoSshould be quick15:48
@HeikoScan send multiple at once actually, as they dont overlap15:48
@HeikoSsanuj: cool!15:48
OXPHOSHeikoS: yep. The matrix - should they be in GPUMemory or I should rename it to GPUMemoryVectorBlabla..?15:48
OXPHOSand have a separate file for GPUMemoryMatrix?15:48
shogun-buildbotbuild #2909 of deb3 - modular_interfaces is complete: Failure [failed examples and unit tests]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/2909  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com>15:49
@HeikoSOXPHOS: I think you can have a new file for matrix15:49
@HeikoSor wai15:49
@HeikoSt15:49
OXPHOSHeikoS: the errors with align: http://pastebin.com/4EUT3CXH15:50
@HeikoSOXPHOS: I think you can re-use the GPUMemoryBase  class for matrix15:51
@HeikoSjust rename the clone method15:51
@HeikoSThen GPUMemoryVectorViennaCL15:51
@HeikoSGPUMemoryMatrixViannaCL15:51
@HeikoSOXPHOS: you need to adjust the pointers in the methods a bit, so that matrix and vector cannot be mixed15:52
OXPHOSHeikoS: I see15:52
@wikingHeikoS: we have another problem15:53
@wiking/home/buildslave/deb3_-_modular_interfaces/build/build/examples/meta/java/regression/kernel_ridge_regression.java:66: error: cannot find symbol15:53
@wiking__sg_storage.append_wrapped(width, "width");15:53
@wikinghttp://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/2909/steps/examples%20and%20unit%20tests/logs/stdio15:53
sanujHeikoS, for this https://github.com/shogun-toolbox/shogun/pull/324615:53
sanujwhere can i find the csharp listing15:54
@HeikoSwiking: yeah I wonder where that is coming from15:54
sanujHeikoS, or shall i just try changing the name of 'params'15:54
@HeikoSI checked the last commit ....15:54
@HeikoSOXPHOS: see my comments in the linalg PR15:54
@HeikoSwiking: I dont get why this is even there for non cpp, serialization should only happen for cpp examples15:54
@HeikoSmist have been some latest patch, checking15:55
@wikingHeikoS: no the problem is that modular stuff have not been executed for a longer time now15:56
@wikingbecause we had a failing bug on viennacl build15:56
@wikingfor some time15:56
@wikingif there's an error15:56
@wikingthe modular stuff are not being built15:56
@HeikoSwiking: I see15:57
@HeikoSwiking: but this serialization stuff15:57
@HeikoSshould only happen for cpp15:57
@HeikoSwiking: as not supported for targets other than cpp15:57
@HeikoSthis error above is missing typemap for String in java15:57
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * ee92d3f / src/shogun/distributions/kernel_exp_family/KernelExpFamilyNystromH.h: https://github.com/shogun-toolbox/shogun/commit/ee92d3f3f3841f05e1bad7130fcd4e5bad79b59315:58
shogun-notifier-shogun: change to low memory mode by default15:58
@HeikoSwiking: btw just discussed to prototype a tensorflow integration for shogun15:59
@HeikoSjust to see ho that would go15:59
OXPHOSHeikoS: you mean like LinalgBackendBase-LinalgBackendGPUBase-LinalgBackendGPUViennaCL?16:03
OXPHOSand I assume LinalgBackendGPUBase looks almost the same as LinalgBackendBase, with only pure virtual methods?16:03
@HeikoSOXPHOS: even simpler16:03
@HeikoSLinalgBackendGPUBase inherits from the existing base16:03
@HeikoSjust adds the GPU methods16:03
@HeikoSso everything is a LinalgBackendBase16:04
@HeikoSbut GPU is more specific16:04
OXPHOSso just the transfer methods16:04
@HeikoSwith these purely virtual methods16:04
@HeikoSyes16:04
@HeikoSto enfore GPU backends implementing them first16:04
OXPHOSand the purely virtual - is current way {SG_NOTIMPLEMENTED} pure virtual? Because I have tried =0 and it didn't work for macro16:05
@HeikoSOXPHOS: pure virtual means that if you dont implement the method then you get a compile error16:05
@HeikoSOXPHOS: should work with macro16:05
OXPHOSHeikoS:#define BACKEND_GENERIC_DOT(Type) \ virtual Type dot(const SGVector<Type>&, const SGVector<Type>&) const = 0;\16:06
OXPHOSHeikoS: oops it works now. sry.16:08
shogun-buildbotbuild #2 of FC23 - libshogun - aarch64 is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FC23%20-%20libshogun%20-%20aarch64/builds/2  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com>16:11
@HeikoSOXPHOS: cool16:13
@HeikoSwiking: fix incoming16:13
@HeikoSOXPHOS: this is almost ready to go :)16:13
@wikingthnx16:15
@wikinglol man16:15
@wikingjvm/spark is a piece of shit:)16:15
@wikingit seems it's heavily doing some false sharing16:15
sanujwiking, i need some help with c++16:15
sanuji'm trying to solve this https://travis-ci.org/shogun-toolbox/shogun/jobs/140998391#L380916:16
sanujhere is the unit-test https://github.com/shogun-toolbox/shogun/pull/3221/commits/eb0dfc3e187ea041b1dc29b3cfa68e735b81a7e5#diff-3ec059f5fe8c08df1d897615a67b54faR7616:16
OXPHOSHeikoS: actually it ALWAYS fails that pythonmodular test: https://travis-ci.org/shogun-toolbox/shogun/jobs/14107598816:17
OXPHOSHeikoS: I didn't really get why..16:17
@HeikoSyeah working on a fix16:17
@HeikoSmeta example16:17
@HeikoS10 mins :)16:17
OXPHOSHeikoS: cool thx!16:17
sanujwiking, you there?16:19
@HeikoSOXPHOS: actually16:19
@HeikoSthis is different16:19
@HeikoSyou have to hide things from SWIG16:19
@HeikoSin order to get rid of this16:19
@HeikoSnothign to do with align or meta examples....this error you shared16:20
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sanujHeikoS, can you help with the above?16:20
@HeikoSsanuj: in a call, 5 min16:20
sanujokay16:20
@HeikoSsanuj: did you run ddd already?16:24
sanujyes16:24
sanuji think i know what is causing it16:24
sanujbut i don' t understand why it is happeneing16:24
sanujshall i explain?16:25
@HeikoSsanuj:  not yet16:25
@HeikoSstill in call16:25
sanujkk16:25
@wikingsanuj: sanuj here16:31
@wikingbut what do u wanna check16:31
@wikingi mean could u give a context?16:31
@wikingwhether it points to the same memory addr?16:31
sanujwiking, this returns false16:32
sanujhttps://github.com/sanuj/shogun/blob/tags/src/shogun/lib/any.h#L12116:32
sanujthat's why it fails16:32
sanujAny is a class which allows to store objects of arbitrary types16:33
sanujerase type is here https://github.com/sanuj/shogun/blob/tags/src/shogun/lib/any.h#L23716:33
sanujB-ZDM-G, there?16:38
sanujgoing to have dinner16:39
sanujsee you later16:39
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@HeikoSOXPHOS: jo16:46
OXPHOSHeikoS: Hey are u back?16:46
@HeikoSso the error, did yousolve it?16:46
@HeikoSyes16:46
OXPHOSHeikoS: not sure what you mean exactly..but that problem is solved now after I removed the aligns..16:48
shogun-notifier-shogun: Esben Sorig :feature/meta_vector_matrix * 294823a / examples/meta/generator/translate.py: https://github.com/shogun-toolbox/shogun/commit/294823acce8521109870dd23f89e2e0a84fa773016:49
shogun-notifier-shogun: Fix bug where injected code remains accross all translations16:49
shogun-notifier-shogun: Heiko Strathmann :feature/meta_vector_matrix * f73bd72 / examples/meta/generator/translate.py: https://github.com/shogun-toolbox/shogun/commit/f73bd72dbef98efca4c2e9f2661c34e2036c961816:49
shogun-notifier-shogun: Merge pull request #3321 from sorig/meta_vector_matrix16:49
shogun-notifier-shogun:16:49
shogun-notifier-shogun: Fix bug where injected code remains across all translations16:49
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@HeikoSOXPHOS: you had this travis error16:50
@HeikoSwhich moaned in python interface about some linalg thing16:50
@HeikoSOXPHOS: is that OK now?16:50
@HeikoSshogun-buildbot: build --force 'deb3 - modular_interfaces'16:50
@HeikoSshogun-buildbot: force build 'deb3 - modular_interfaces'16:50
shogun-buildbotbuild #2910 forced16:50
shogun-buildbotI'll give a shout when the build finishes16:50
OXPHOSHeikoS: nope. python/lua/octave gives error and I added the links to the comments of:https://github.com/shogun-toolbox/shogun/pull/331716:52
@HeikoSImportError: /home/travis/shogun-build/lib/python2.7/dist-packages/_modshogun.so: undefined symbol: _ZN6shogun16get_global_linlgEv16:52
@HeikoSthis one?16:52
OXPHOSHeikoS: yep16:53
@HeikoSOXPHOS: is it maybe because you forgot to guard some things?16:55
@HeikoSOXPHOS: can you reproduce this locally with python?16:56
OXPHOSHeikoS: do I have to build meta example and enable python modular for this?16:58
@HeikoSno meta examples needed16:59
@HeikoSjust build shogun with ptyhon enabled16:59
@HeikoSand then python -c 'import modshogun'16:59
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OXPHOSHeikoS: sth. more not found: http://pastebin.com/dpqRmktb17:02
@HeikoSOXPHOS: it is a weird error17:02
@HeikoSOXPHOS: this is locally?17:02
OXPHOSHeikoS: yep17:02
@HeikoSehm .....17:02
@HeikoSweird?17:02
@HeikoSso this is fresh build?17:03
@HeikoSlatest develop?17:03
@HeikoSand definitely no artifact of changing git or so?17:03
OXPHOSfresh linalg feature branch. got the error since my first push. honestly i don't know how it behaves originally but it seems to be the problem with sg_linalg..17:04
@HeikoSOXPHOS: try hiding the linalg getter from swig17:07
@HeikoScan be because we dont have a typemap for SGLinalg17:08
@HeikoSI mean the travis error17:08
@HeikoSand linalg should be totally hidden from SWIG17:08
shogun-buildbotbuild #55 of xenial - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/xenial%20-%20libshogun/builds/55  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, OXPHOS <engelzora@gmail.com>, Viktor Gal <viktor.gal@maeth.com>17:09
OXPHOSHeikoS: so I'll try hiding get_global_sg_linalg only for now?17:11
shogun-buildbotbuild #20 of clang - thread analysis is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang%20-%20thread%20analysis/builds/20  blamelist: lambday <heavensdevil6909@gmail.com>, Ariane Paola Gomes <arianepaola@users.noreply.github.com>, Esben Sorig <esben@sorig.eu>, Sanuj <sanuj.sharma.in@gmail.com>, Fredrik17:11
shogun-buildbotHallgren <fredrik.hallgren@ucl.ac.uk>, OXPHOS <engelzora@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Sergey Lisitsyn <lisitsyn.s.o@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>, Viktor Gal <viktor.gal@maeth.com>, Heiko Strathmann <heiko.strathmann@gmail.com>, Saurabh7 <saurabh.mahindre@gmail.com>17:11
shogun-buildbotbuild #18 of clang - undefined behaviour analysis is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang%20-%20undefined%20behaviour%20analysis/builds/18  blamelist: lambday <heavensdevil6909@gmail.com>, Ariane Paola Gomes <arianepaola@users.noreply.github.com>, Esben Sorig <esben@sorig.eu>, Sanuj17:11
shogun-buildbot<sanuj.sharma.in@gmail.com>, Fredrik Hallgren <fredrik.hallgren@ucl.ac.uk>, OXPHOS <engelzora@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Sergey Lisitsyn <lisitsyn.s.o@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>, Viktor Gal <viktor.gal@maeth.com>, Heiko Strathmann <heiko.strathmann@gmail.com>, Saurabh7 <saurabh.mahindre@gmail.com>17:11
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OXPHOSHeikoS: going to sleep now..I can try hiding stuff from SWIG parts by parts tmr when the travis is not busy17:15
@HeikoSOXPHOS: your local error is weird as well17:25
@HeikoSbut ok17:25
@HeikoSgood night17:25
@HeikoSyeah just the linalg to see whats wrong17:25
shogun-notifier-shogun: Esben Sorig :develop * 149756e / examples/meta/generator/translate.py: https://github.com/shogun-toolbox/shogun/commit/149756ecdbc4dfa6b10f558a703994f75547b99b17:33
shogun-notifier-shogun: Fix bug where injected code remains accross all translations17:33
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 88825b4 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/88825b4960f2f413ba528a6aa8da9ec914e8cfba17:39
shogun-notifier-shogun: first working build_system for full gaussian estimator with unit tests17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * fbbed15 / tests/unit/distribution/KernelExpFamilyImpl_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/fbbed158b49eb0e0782b59c67a4661bb3a73dcb517:39
shogun-notifier-shogun: remove print17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * aef31f7 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/aef31f780e79418e1e985b7a5d26cc0703c5ca5f17:39
shogun-notifier-shogun: add fit method and (broken) unit test17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 31879cf / src/shogun/distributions/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/31879cf975b96352bebcea9b1b4ea7033543abe817:39
shogun-notifier-shogun: fix uninitialized memory error17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 6160881 / tests/unit/distribution/KernelExpFamilyImpl_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/6160881494f72ede2df1d0446c673c5436123b1717:39
shogun-notifier-shogun: fix memory leak via using SG_REF17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * c9118f0 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/c9118f05289be1c166cc5bf7813ac6433e5cdd8617:39
shogun-notifier-shogun: implemented nystrom using pinv (not working yet)17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 3b85f44 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/3b85f444a3214768dc7fc638d62808d4fc666d1d17:39
shogun-notifier-shogun: make pinv work17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 17b4a62 / src/shogun/distributions/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/17b4a6228a237c1f97b8f3d06a81806a0f091acb17:39
shogun-notifier-shogun: re-add accidentially remove variables17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 59e2d45 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/59e2d4586380157a984d17f81de8b81c52b068b217:39
shogun-notifier-shogun: added log_pdf method for full model17:39
shogun-notifier-shogun: change interface to SGMatrix, clena up imports17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * ec082c3 / src/shogun/distributions/kernel_exp_family/KernelExpFamily.cpp: https://github.com/shogun-toolbox/shogun/commit/ec082c3d80ce91757fa090b652f725ea496a49b517:39
shogun-notifier-shogun: remove requires for now17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 44310cc / tests/unit/distribution/KernelExpFamilyNystromImpl_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/44310ccd85558b709d9c588964b1029ab66e3fde17:39
shogun-notifier-shogun: fix memory error17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 98d5383 / src/shogun/distributions/kernel_exp_family/ (2 files): https://github.com/shogun-toolbox/shogun/commit/98d538305966d166af6af299b52a484403bfa55a17:39
shogun-notifier-shogun: added grad and some REQUIRE statements17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * fde7a24 / src/shogun/distributions/kernel_exp_family/KernelExpFamily.cpp: https://github.com/shogun-toolbox/shogun/commit/fde7a24c0c4f1f8d79a0dedc972535b80a2a3c9e17:39
shogun-notifier-shogun: fix REQUIRE17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * ea2341e / src/shogun/distributions/kernel_exp_family/impl/ (2 files): https://github.com/shogun-toolbox/shogun/commit/ea2341ee99d4fb3bc9af35f0dc9e5a19ff4ec57f17:39
shogun-notifier-shogun: added few comments and TODOs, parallelized another loop in nystrom17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 2209cd3 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.h: https://github.com/shogun-toolbox/shogun/commit/2209cd3ecafc1f4b23dc26157df94f26e6506ee517:39
shogun-notifier-shogun: more todo17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 8973e06 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.h: https://github.com/shogun-toolbox/shogun/commit/8973e06df297cd285dbe91a548ae6431d6c434fa17:39
shogun-notifier-shogun: add another todo17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * e1249c3 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/e1249c3a9009cb98d2601aa528ad51a7493e735c17:39
shogun-notifier-shogun: added nystrom grad17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 35f468e / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/35f468e03af97972690d98377f3cda3f87e6759e17:39
shogun-notifier-shogun: add two more TODOs17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 1555d4b / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyNystromImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/1555d4ba3d50e02f0c992007837042e3d1f4c31517:39
shogun-notifier-shogun: temp commit to save current state17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 5bc47d5 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/5bc47d512c770f8154abcf4b87c76cb54f47d04c17:39
shogun-notifier-shogun: refactor column sub-sampling and minor clean-ups17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 8709826 / src/shogun/distributions/kernel_exp_family/impl/ (3 files): https://github.com/shogun-toolbox/shogun/commit/8709826a4f8492d8d6dbf2df1ac8691346801aa717:39
shogun-notifier-shogun: a working version using precomputed squared norms17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 457146c / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/457146c5534b9759964554ca9f0b312e5ccb97bd17:39
shogun-notifier-shogun: fix invalid memory free error17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 9b952b5 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/9b952b5825df0d0531db03b1942f9f4f6ded187917:39
shogun-notifier-shogun: exploit precomputed difference vectors17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * c0ff79b / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/c0ff79b5e33a313595ff9aa3505fbd8124e574b717:39
shogun-notifier-shogun: exploit symmetry in precomputing17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * c3d086f / / (2 files): https://github.com/shogun-toolbox/shogun/commit/c3d086fe747331eb12bc15d071fc98794a65962317:39
shogun-notifier-shogun: fix an issue which makes nystrom fail for small number of rkhs basis functions17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 80a7459 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/80a7459ad5e365f4306e3b7d9684a340f0db0ea417:39
shogun-notifier-shogun: introduce flag to distinguish between low and high memory mode; fix bugs around nystrom17:39
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * af46460 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyNystromImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/af46460bec3e41814810dcfa218274dfa4aece1d17:39
shogun-notifier-shogun: some const clean-ups17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * b390420 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/b390420e541c54df31992577d9c2c115b3afeb7a17:40
shogun-notifier-shogun: add index based kernel functions17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * a508157 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/a508157a2fdc52d1e8adf67081ce7ac560f6d8d017:40
shogun-notifier-shogun: final conversion to index based kernel calls17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 0142539 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyNystromImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/0142539cccab26f7117051dfe6417760a6e7973217:40
shogun-notifier-shogun: use LLT rather than pinv17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 3f3ba11 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/3f3ba11ea08ff031483f5dc58367b5b4a7a934e917:40
shogun-notifier-shogun: use self adjoint eigensolver for pseudo inverse17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 6585125 / src/shogun/distributions/kernel_exp_family/impl/ (2 files): https://github.com/shogun-toolbox/shogun/commit/6585125a5aa3d738c369764bc07447e32a3281b717:40
shogun-notifier-shogun: fix memory error caused by overloading not happening due to forgotten const keyword17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 57398de / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/57398de4d9d92a7685c699c308f34255c7c5325617:40
shogun-notifier-shogun: give correct info message17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * d175cf1 / src/shogun/distributions/kernel_exp_family/impl/KernelExpFamilyNystromImpl.cpp: https://github.com/shogun-toolbox/shogun/commit/d175cf19a43921e801c80b7afd30995f7e84f72817:40
shogun-notifier-shogun: remove old comments17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 140a593 / / (8 files): https://github.com/shogun-toolbox/shogun/commit/140a59377658f7e73428d460d276dc021f1f59aa17:40
shogun-notifier-shogun: big refactoring, added new nystrom approxation class17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * e3076a6 / src/interfaces/modular/Distribution.i/ (2 files): https://github.com/shogun-toolbox/shogun/commit/e3076a687d79627399784e60f59782f4fab0e9f517:40
shogun-notifier-shogun: minor updates17:40
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * c8e4ffc / src/shogun/distributions/kernel_exp_family/KernelExpFamilyNystromH.h: https://github.com/shogun-toolbox/shogun/commit/c8e4ffcc6ead6b27292764a9a815d9e453e3672617:40
shogun-notifier-shogun: change to low memory mode by default17:40
shogun-buildbotbuild #2910 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/291017:41
@HeikoSwiking:  ^17:42
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shogun-buildbotbuild #1271 of precise - libshogun is complete: Failure [failed compile]  Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/1271  blamelist: Esben Sorig <esben@sorig.eu>17:46
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travis-ciit's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/14108608317:49
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@HeikoSshogun-buildbot: build force --branch=develop 'deb3 - modular_interfaces'17:51
@HeikoSshogun-buildbot: force build --branch=develop 'deb3 - modular_interfaces'17:51
shogun-buildbotThe build has been queued, I'll give a shout when it starts17:51
@HeikoSshogun-buildbot: force build 'deb3 - modular_interfaces' --branch=develop17:51
shogun-buildbotThe build has been queued, I'll give a shout when it starts17:51
shogun-buildbotbuild #2916 of bsd1 - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2916  blamelist: Esben Sorig <esben@sorig.eu>17:52
shogun-buildbotbuild #56 of xenial - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/xenial%20-%20libshogun/builds/56  blamelist: Esben Sorig <esben@sorig.eu>17:53
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@HeikoSSaurabh7: jo18:05
@HeikoSsee my comments18:05
@HeikoSnice that it scales18:05
@HeikoS!18:05
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * 3612fa3 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/3612fa36021c15f1677f828578471d265c27fde518:19
shogun-notifier-shogun: added method to compute sub-sampled version of h18:19
shogun-buildbotbuild forced [ETA 40m29s]18:22
shogun-buildbotI'll give a shout when the build finishes18:22
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shogun-buildbotbuild #3 of FC23 - libshogun - aarch64 is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FC23%20-%20libshogun%20-%20aarch64/builds/3  blamelist: Esben Sorig <esben@sorig.eu>18:31
Saurabh7HeikoS: yo18:36
Saurabh7yes I saw will make changes18:36
@HeikoSSaurabh7: so this is pretty encouraging I think :)18:36
@HeikoSnow we have bagging going18:36
@HeikoSbig improvement18:36
@HeikoSespecially for parallel18:36
Saurabh7yes very nice, removing that TODO comment soon :)18:37
Saurabh7HeikoS: modifying the shallow_subset copy doesnt change another one18:38
Saurabh7i.e the matrix for densefeatures ?18:38
Saurabh7your comment^18:39
@HeikoSSaurabh7: yeah18:42
@HeikoSlike "it is thread safe"18:42
@HeikoSbut testing this without doing threads18:43
@HeikoSjust create a few shallow copies, and do stuff with them18:43
@HeikoSand then assert that the subsets dont interfer18:43
Saurabh7ok cool18:46
shogun-buildbotbuild #2912 of deb3 - modular_interfaces is complete: Failure [failed test libshogun]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/291218:52
shogun-buildbotbuild forced [ETA 40m29s]18:52
shogun-buildbotI'll give a shout when the build finishes18:52
shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * b1f7451 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/b1f74513fe7bcf3ce9d2b837aa8e466bd2b04a1618:54
shogun-notifier-shogun: compute_h now is real nystrom18:54
@HeikoSSaurabh7: http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/2912/steps/test%20libshogun/logs/stdio19:02
Saurabh7HeikoS: weird this, I dont understand why its happening though19:07
Saurabh7I had fixed the evaultion to be proper,19:08
@HeikoSdont know19:08
@HeikoSjust pointed you to it )19:08
sanujany.h is making me mad19:10
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@HeikoSsanuj: haha19:15
@HeikoSso?19:15
@HeikoSshall I help?19:15
sanuj:D19:15
@HeikoSalso having problems here atm argh19:15
sanujit's frustrating19:16
sanujhttps://github.com/sanuj/shogun/blob/tags/src/shogun/lib/any.h19:16
sanujbazdmeg19:17
@HeikoSsanuj: you need to debug19:19
@HeikoSand follow call calls19:19
sanujHeikoS, i have a doubt19:19
sanujHeikoS, see line 9519:19
sanujcan you explain what is happening here19:20
@HeikoSI dont get the question19:20
sanujHeikoS, did you see line 95?19:20
@HeikoSlooking at it19:21
sanuj*(storage) = new T(*reinterpret_cast<T const*>(v));19:21
@HeikoSwhat is unclear?19:21
sanujso v is pointer to a value19:21
@HeikoSyes19:21
@HeikoSvoid19:21
sanujsuppose i do -> int i=10; Any any(i);19:21
sanujthen v will be void * to i19:21
sanujHeikoS, right?19:22
shogun-buildbotbuild #2913 of deb3 - modular_interfaces is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/291319:22
@HeikoSvoid * to i?19:22
sanuja pointer to i19:22
sanuja void* pointer pointing to memory address of int i19:23
@HeikoSwhat is int i?19:23
@HeikoSah the thing you passed19:23
@HeikoSyeah19:23
sanujinteger19:23
@HeikoSsure19:23
sanujHeikoS, i had added a line below that19:24
sanujto print values19:24
sanujstd::cout << *(reinterpret_cast<int*>(storage)) << std::endl;19:24
sanujand then i did19:24
sanujint integer = 10;19:24
sanuj    auto any = Any(integer);19:24
@HeikoSsorry I am not following19:24
@HeikoSwhat the problem is19:25
sanuji'm getting this as output 3838428819:25
@HeikoSsanuj: what can I say19:26
@HeikoSdebug19:26
@HeikoSrun the debugger19:26
@HeikoSlook at the memory19:26
@HeikoSonly way19:26
@HeikoSnot sure how to get this across19:26
@HeikoSbut like this, how can I know what is wrong?19:26
@HeikoSor you?19:26
@HeikoSso run debugger and check all parts of it19:26
@HeikoStake machine into pieces and then check19:27
sanujokay19:27
@HeikoSsanuj: I mean if you have a problem doing that, let me know19:28
@HeikoSbut I just cannot help this way19:28
@HeikoSlook at the memory19:29
@HeikoScheck where the pointers go to19:29
@HeikoSmake sure you understand what each part of that line mean19:29
sanujcool19:30
@HeikoSsanuj: happy to discuss once you find things19:30
@HeikoSsanuj: I mean you solved the other bug using the debugger right?19:30
@HeikoSwhere you were stuck for quite a while before you used it19:30
sanujyes i had19:31
@HeikoSso remember what mindset solved your problem: getting down with things19:31
sanujokayyyyy19:31
sanuj:D19:31
@HeikoSSaurabh7: jo!19:31
@HeikoSSaurabh7: can you pls hide all these RF methods from SWIG? Either via putting them in an impl class or guarding them19:32
@HeikoSI get tons of warnings for missing parameter docs of the helper methods in there19:32
@HeikoSbut these methods should not be in SWIG anyways19:32
@HeikoSsanuj: you will see you can do it :D19:32
sanujlet's hope so :D19:33
Saurabh7HeikoS: The newly changed ones ?19:34
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Saurabh7ok I will check and hide19:35
@HeikoSSaurabh7: all helper methods19:39
@HeikoSbasically SWIG should only see that stuff that would be used in a meta example, nothing of the internals should be exposed19:39
@HeikoSSaurabh7: some ppl like interface classes for that reason19:39
@HeikoSSaurabh7: check LMNN e.g.19:39
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travis-ciit's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/14110035819:53
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shogun-notifier-shogun: Heiko Strathmann :feature/kernel_exp_family * dc67037 / / (12 files): https://github.com/shogun-toolbox/shogun/commit/dc6703759561a4a1a492c72b90b7eb39d6d185aa20:30
shogun-notifier-shogun: Big refactoring to get rid of old nystrom implementation which was not correct. Only one class remains20:30
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travis-ciit's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/14112527221:29
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travis-ciit's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/14113374022:05
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travis-ciit's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/14115524822:34
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--- Log closed Thu Jun 30 00:00:01 2016
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