| --- Log opened Fri Jul 29 00:00:42 2016 | ||
| -!- HeikoS [~heiko@nat-211-176.internal.eduroam.ucl.ac.uk] has quit [Quit: Leaving.] | 03:58 | |
| -!- OXPHOS [c0a906af@gateway/web/freenode/ip.192.169.6.175] has joined #shogun | 04:44 | |
| @wiking | OXPHOS, wazzaaa | 04:48 |
|---|---|---|
| @wiking | OXPHOS, do we serialize? | 04:48 |
| OXPHOS | wiking: I'm dockering! | 04:49 |
| @wiking | aaaah ok | 04:49 |
| @wiking | so you still have to resolve travis, right? | 04:49 |
| OXPHOS | wiking: may i ask, what's the hash number pulling from shogun/dev? I can't find a match in shogun | 04:49 |
| OXPHOS | yes | 04:49 |
| @wiking | docker pull shogun/shogun-dev | 04:49 |
| @wiking | this should pull you the image | 04:50 |
| OXPHOS | yeah | 04:50 |
| OXPHOS | wiking: can you explain more? how do I suppose to use it :) | 04:51 |
| @wiking | ah | 04:51 |
| @wiking | so once you've pull | 04:51 |
| @wiking | *ed | 04:51 |
| @wiking | then you do | 04:52 |
| @wiking | sudo docker run -it shogun/shogun-dev /bin/bash | 04:52 |
| @wiking | then you are inside the docker | 04:52 |
| OXPHOS | wiking: I don't need all the latest right? the downloading is kinda slow | 04:53 |
| OXPHOS | wiking: and it started all over today | 04:53 |
| @wiking | what do you mean latest? | 04:54 |
| @wiking | of? | 04:54 |
| @wiking | docker image? | 04:54 |
| @wiking | i mean there's like 2 version of it | 04:54 |
| @wiking | it has a lot of dependencies :) | 04:54 |
| OXPHOS | ohh | 04:54 |
| OXPHOS | I got Using default tag: latest latest: Pulling from shogun/shogun-dev | 04:54 |
| OXPHOS | 96c6a1f3c3b0: Downloading 40.01 MB/65.7 MB ed40d4bcb313: Download complete b171f9dbc13b: Download complete | 04:54 |
| @wiking | yeah but it'll pull a lot of images | 04:54 |
| OXPHOS | blabla.. | 04:54 |
| @wiking | like the base image | 04:55 |
| @wiking | etc | 04:55 |
| OXPHOS | it's gonna be tough | 04:55 |
| OXPHOS | wiking: btw I can't remove or unlink string | 04:56 |
| @wiking | ? | 04:56 |
| @wiking | ? | 04:56 |
| @wiking | i'm not sure if i understand | 04:56 |
| @wiking | std::string a; | 04:56 |
| @wiking | a.c_str() | 04:56 |
| OXPHOS | wiking: so the filename in serialization unittest. I'm not using char | 04:56 |
| @wiking | yeah and | 04:57 |
| @wiking | ? | 04:57 |
| @wiking | std::string has api | 04:57 |
| @wiking | that returns the char* behind it | 04:57 |
| @wiking | .c_str() | 04:57 |
| OXPHOS | okay i see | 04:57 |
| @wiking | please RTFM | 04:57 |
| @wiking | OXPHOS, here? | 06:23 |
| OXPHOS | wiking: yep | 06:24 |
| @wiking | ok so this is not correct | 06:24 |
| @wiking | https://github.com/shogun-toolbox/shogun/pull/3375/files/28766e03e946c002f3796dfaf6f47d14c1f6b8c0..8a76421e1cbd81e2926dfadcf0d55c30860d8445#diff-1689b0bd3ceb28355cc3c05ed7ffe4f0R127 | 06:24 |
| @wiking | you wanna expose the load/save_xml/json/binary to swig | 06:24 |
| @wiking | as you wanna be able to save/load from swig interfaces | 06:24 |
| @wiking | the only thing that you dont wanna expose to swig | 06:25 |
| @wiking | is the templated version | 06:25 |
| @wiking | of load/save | 06:25 |
| OXPHOS | ohhh i see | 06:25 |
| OXPHOS | thanks | 06:25 |
| -!- OXPHOS [c0a906af@gateway/web/freenode/ip.192.169.6.175] has quit [Ping timeout: 250 seconds] | 08:03 | |
| -!- sanuj [~sanuj@117.203.21.44] has joined #shogun | 10:09 | |
| sanuj | lisitsyn, there? | 10:11 |
| -!- c4goldsw [5da420e6@gateway/web/cgi-irc/kiwiirc.com/ip.93.164.32.230] has joined #shogun | 11:23 | |
| @wiking | c4goldsw, y0 | 11:34 |
| c4goldsw | wiking hello | 11:34 |
| c4goldsw | doing well? | 11:34 |
| @wiking | c4goldsw, you have introduced some memleaks: http://buildbot.shogun-toolbox.org/memcheck/20160728-0131.html | 11:34 |
| c4goldsw | wiking Alright, I'll look into that then - I'll probably have questions in a few minutes | 11:35 |
| @wiking | kkk | 11:36 |
| c4goldsw | wiking, is index_t signed or unsigned? | 11:40 |
| c4goldsw | If you don't know I'll just test it quickly (I couldn't find where it's defined). | 11:40 |
| c4goldsw | wiking Ah, it's int32_t | 11:47 |
| @wiking | i think yeah it's a typedef for int32_t | 11:47 |
| c4goldsw | Now, here's a little problem I'm having. Remember the errors I was getting from here: http://buildbot.shogun-toolbox.org/builders/coverity%20analysis/builds/110/steps/analyse/logs/stdio | 11:48 |
| c4goldsw | They're just being caused by lines like this: https://github.com/shogun-toolbox/shogun/blob/develop/src/shogun/regression/LeastAngleRegression.cpp#L203 | 11:48 |
| c4goldsw | Now, what should I do to resolve an error like this? It seems a little silly to have to cast just to stop a warning, but that's the easiest solution I have in mind. | 11:49 |
| c4goldsw | wiking ^ | 11:50 |
| @wiking | size_type Unsigned integral type (usually std::size_t) | 11:51 |
| @wiking | use the right type for the i | 11:52 |
| @wiking | so for example | 11:52 |
| @wiking | instead of for (index_t i=0; i < corr.size(); ++i) | 11:52 |
| @wiking | do for (size_t i=0; i < corr.size(); ++i) | 11:52 |
| @wiking | right? | 11:52 |
| c4goldsw | Ok, thanks. Next question: would you recommend Valgrind for finding the memleaks? | 11:52 |
| @wiking | yeah that's hat is being used there | 11:55 |
| c4goldsw | Okee dokee. Thanks for the help. | 11:56 |
| @wiking | nw | 11:56 |
| c4goldsw | wiking Also, how can I get these warnings to show? Is there some CMake option for that? | 12:01 |
| @wiking | well it pretty much depends on your compiler | 12:01 |
| @wiking | in that case i think clang is being used | 12:01 |
| @wiking | but you can specify | 12:01 |
| @wiking | like | 12:01 |
| @wiking | CXXFLAGS="-Werror" CFLAGS="-Werror" cmake ... | 12:02 |
| @wiking | and then do the make | 12:02 |
| @wiking | becuase in that case every warning will act as an error | 12:02 |
| c4goldsw | Okay, thanks. | 12:02 |
| -!- sanuj [~sanuj@117.203.21.44] has quit [Ping timeout: 244 seconds] | 12:23 | |
| -!- HeikoS [~heiko@nat-241-132.internal.eduroam.ucl.ac.uk] has joined #shogun | 13:19 | |
| -!- mode/#shogun [+o HeikoS] by ChanServ | 13:19 | |
| c4goldsw | Hey HeikoS, how are you? | 13:29 |
| @HeikoS | c4goldsw: hey man | 13:29 |
| @HeikoS | yeah all good , and you? | 13:29 |
| c4goldsw | Good good. Where you on holiday? | 13:29 |
| @HeikoS | yeah last week | 13:31 |
| c4goldsw | Cool. Have a question about the clean up: https://github.com/shogun-toolbox/shogun/pull/3313#discussion-diff-71969594R43 | 13:31 |
| @HeikoS | sure will do | 13:31 |
| c4goldsw | What's the exact issue, and what can I do about it (what I just linked), if anything? | 13:31 |
| @HeikoS | c4goldsw: so we cannot have any method exposed to SWIG that have std:: in them | 13:32 |
| @HeikoS | so this needs to be hidden from SWIG | 13:32 |
| c4goldsw | How do you hide it? | 13:32 |
| @HeikoS | which means it needs to be guarded with #ifndef HAVE_SWIG | 13:32 |
| @HeikoS | or similar, I always forget the exact name of macro | 13:33 |
| @HeikoS | see SGVector.h there is many such guards | 13:33 |
| c4goldsw | Alright, I'll get onto that then. That's all for now | 13:33 |
| @HeikoS | it just means swig ignores | 13:33 |
| @HeikoS | so it is as simple as adding 2 lines | 13:33 |
| @HeikoS | but maybe it already is, just wanted to make sure | 13:33 |
| c4goldsw | #ifndef works | 13:33 |
| c4goldsw | No, I don't think so. | 13:33 |
| c4goldsw | nope | 13:33 |
| -!- sanuj [~sanuj@117.203.21.44] has joined #shogun | 13:46 | |
| c4goldsw | Hey HeikoS, what do SG_REF() and SG_UNREF() do? | 15:18 |
| @wiking | c4goldsw, ++ and -- the reference counter | 15:19 |
| @wiking | in case you do a CMachine* m = new CLeastAngleRegression(...); | 15:19 |
| @wiking | you'll have to do a SG_UNREF(m); | 15:20 |
| @wiking | on the end | 15:20 |
| @wiking | to release the memory | 15:20 |
| c4goldsw | Makes sense. | 15:20 |
| c4goldsw | Thanks wiking | 15:20 |
| @wiking | nw | 15:20 |
| @HeikoS | lisitsyn: around? | 15:20 |
| c4goldsw | wiking Also, the leaks are being caused by test cases which are made to crash intentionally. I'll get onto resolving that. | 15:21 |
| c4goldsw | Cleanup currently isn't happening when they do crash. | 15:21 |
| @wiking | ah cool just make sure that it'll still happen :) | 15:22 |
| lisitsyn | HeikoS: yeap | 15:23 |
| sanuj | lisitsyn, you look away | 15:23 |
| sanuj | now you are not away | 15:24 |
| lisitsyn | just a few minutes here | 15:25 |
| lisitsyn | sup | 15:25 |
| sanuj | lisitsyn, plugins PR is good to be merged | 15:25 |
| sanuj | just this https://github.com/shogun-toolbox/shogun/pull/3370#discussion-diff-72779293R31 | 15:26 |
| sanuj | lisitsyn, ^ | 15:26 |
| lisitsyn | sanuj: could you please get rid of camel case there? | 15:28 |
| lisitsyn | for some reason I used it | 15:28 |
| sanuj | lisitsyn, for function names or class names? | 15:29 |
| lisitsyn | sanuj: functions | 15:31 |
| sanuj | lisitsyn, Khorosho | 15:31 |
| @HeikoS | lisitsyn: I have two questions for you | 15:40 |
| @HeikoS | lisitsyn: 1. "view whole listing" in meta examples | 15:41 |
| @HeikoS | 2.) how to get this integration testing working for SWIg targets | 15:53 |
| @HeikoS | i.e. templated array | 15:53 |
| c4goldsw | ping wiking | 15:55 |
| @wiking | pong | 15:55 |
| c4goldsw | wiking sorry for the delay. If I want to throw a general error, what should I throw? | 15:59 |
| c4goldsw | Would throw; be sufficeint? It's for the tests that are meant to crash, when I'm handling the actual error being thrown (it's for cleanup) | 16:00 |
| c4goldsw | I just did a quick test and it appear to work. | 16:00 |
| c4goldsw | appeared* | 16:01 |
| -!- shogun-notifier- [~irker@7nn.de] has joined #shogun | 16:04 | |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * d60e006 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/d60e006254342267f67fb3be702d64c6564accce | 16:04 |
| shogun-notifier- | shogun: some cosmetic updates for meta example and cookbooks | 16:04 |
| shogun-notifier- | shogun: lambday :feature/bigtest * d4e5d9c / src/shogun/statistics/experimental/internals/ (34 files): https://github.com/shogun-toolbox/shogun/commit/d4e5d9c7f5afe8fcd83122f5a5f4157d025bb54e | 16:09 |
| shogun-notifier- | shogun: added first version of bigtesting framework | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 89fde9a / src/shogun/statistics/experimental/internals/ (5 files): https://github.com/shogun-toolbox/shogun/commit/89fde9a2582e88de261fae677bb253c4fcf762c1 | 16:09 |
| shogun-notifier- | shogun: documentation and code-style changes | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * f006809 / src/shogun/statistics/experimental/ (3 files): https://github.com/shogun-toolbox/shogun/commit/f00680964bebc26abfeb0b320b9efa74d39f354a | 16:09 |
| shogun-notifier- | shogun: added hypothesis test (experimental) base class | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * b9d2d16 / src/shogun/ (108 files): https://github.com/shogun-toolbox/shogun/commit/b9d2d16d2bc9164f99a808085609b626fff5f612 | 16:09 |
| shogun-notifier- | shogun: removed old files | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 55bf4e1 / src/shogun/hypothesistest/ (38 files): https://github.com/shogun-toolbox/shogun/commit/55bf4e1ed6578df41f42a92345dbb5d600af1b9e | 16:09 |
| shogun-notifier- | shogun: added rest of the files | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 2dffb2f / examples/meta/src/statistical_testing/quadratic_time_mmd.sg: https://github.com/shogun-toolbox/shogun/commit/2dffb2fb9fd72ca07a58a93c9f2952341c43dfe1 | 16:09 |
| shogun-notifier- | shogun: first meta example for mmd | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 64bba70 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/64bba70decaff46a8f8c67c210315911483d76d6 | 16:09 |
| shogun-notifier- | shogun: Add an initial cookbook page for quadratic time mmd | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * f9ee049 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/f9ee049281bdd86b9280f0f1f6c7837e293cef94 | 16:09 |
| shogun-notifier- | shogun: add linear time mmd api example draft | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 8fb45d7 / / (127 files): https://github.com/shogun-toolbox/shogun/commit/8fb45d73ad50bfcf0683f74623e94211b21b9d16 | 16:09 |
| shogun-notifier- | shogun: fix build issues | 16:09 |
| shogun-notifier- | shogun: temporarily removed unit-tests to avoid compilation issues | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 66b6fdb / src/shogun/statistical_testing/MMD.cpp,src/shogun/statistical_testing/MMD.h: https://github.com/shogun-toolbox/shogun/commit/66b6fdb3ded43224d7bac0cad8b4feb3c841e25a | 16:09 |
| shogun-notifier- | shogun: removed statistic computation API for multiple kernels | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 567b0d2 / src/shogun/statistical_testing/MMD.cpp: https://github.com/shogun-toolbox/shogun/commit/567b0d2309f422f6778c50cf8b73ee7ab83991b9 | 16:09 |
| shogun-notifier- | shogun: removed simulate_null | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * efa7976 / src/shogun/statistical_testing/MMD.cpp: https://github.com/shogun-toolbox/shogun/commit/efa79763e29b36bb6599bbf626f6d49cdf171a08 | 16:09 |
| shogun-notifier- | shogun: added permutation test with precomputed kernel matrices | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 9f556bc / examples/meta/src/statistical_testing/linear_time_mmd.sg: https://github.com/shogun-toolbox/shogun/commit/9f556bc0e182b6e7afa79bd1b14a4c59d10c8556 | 16:09 |
| shogun-notifier- | shogun: added number of samples (mandatory for streaming samples) to lineartime mmd meta example | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * ceefe38 / src/shogun/statistical_testing/QuadraticTimeMMD.cpp: https://github.com/shogun-toolbox/shogun/commit/ceefe38fa221974541abe01ab48f30a5d06fbf39 | 16:09 |
| shogun-notifier- | shogun: todo for later | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 2a9b05b / / (3 files): https://github.com/shogun-toolbox/shogun/commit/2a9b05b4403e49efa9f9fb6f38b641711f480c91 | 16:09 |
| shogun-notifier- | shogun: add constructor to QuadraticTimeMMD | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 0754cf9 / doc/cookbook/source/examples/statistical_testing/quadratic_time_mmd.rst: https://github.com/shogun-toolbox/shogun/commit/0754cf97befae9c0c2353b8a4ee7005d9e0e3cf6 | 16:09 |
| shogun-notifier- | shogun: Give the example some love | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 048770b / doc/cookbook/source/examples/statistical_testing/ (2 files): https://github.com/shogun-toolbox/shogun/commit/048770b9f4e8d4683eb5752cf19e7af53ed16bcf | 16:09 |
| shogun-notifier- | shogun: more cookbook updates | 16:09 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * a4a8575 / src/shogun/statistical_testing/QuadraticTimeMMD.cpp: https://github.com/shogun-toolbox/shogun/commit/a4a8575002fc1bf612f0e209bdb07a2597446592 | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * ea9104c / tests/unit/statistical_testing/ (8 files): https://github.com/shogun-toolbox/shogun/commit/ea9104c20b2e98064d8cd3405149f85aa9c58e28 | 16:09 |
| shogun-notifier- | shogun: added data-fetchers and kernel-manager unit-tests | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 9240482 / / (8 files): https://github.com/shogun-toolbox/shogun/commit/92404823daed2717a572878f05b04494d149dfea | 16:09 |
| shogun-notifier- | shogun: fixed quadratic time mmd bugs and speedup | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * ffaf758 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/ffaf758f2ae7a94919757a49c1ce8f1df6b836a7 | 16:09 |
| shogun-notifier- | shogun: added more tests, fixed more bugs | 16:09 |
| shogun-notifier- | shogun: lambday :feature/bigtest * f7da454 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/f7da4547e3873dddfec103520e45e481683ef571 | 16:09 |
| shogun-notifier- | shogun: removed temporary permuted matrix creation for mmd | 16:09 |
| shogun-notifier- | shogun: | 16:09 |
| shogun-notifier- | shogun: - since SIMD doesn't help in this case, rather slows things down | 16:09 |
| shogun-notifier- | shogun: due to temporary matrix creation | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 06f916e / / (5 files): https://github.com/shogun-toolbox/shogun/commit/06f916eed38dbd4061755febbacf97139b147665 | 16:10 |
| shogun-notifier- | shogun: added cache-friendly sum-computation for permutation | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * c0b2164 / src/shogun/statistical_testing/ (4 files): https://github.com/shogun-toolbox/shogun/commit/c0b21644b6928a628dbb51a0e17830067e954b8c | 16:10 |
| shogun-notifier- | shogun: Added task-parallel computation support | 16:10 |
| shogun-notifier- | shogun: | 16:10 |
| shogun-notifier- | shogun: - Speeded up the permutation test | 16:10 |
| shogun-notifier- | shogun: - Overall speed-up due to | 16:10 |
| shogun-notifier- | shogun: added add_kernel method in MMD | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * dcbbe81 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/dcbbe81f6c81fc947443e8abd18c62ae0ef17ac4 | 16:10 |
| shogun-notifier- | shogun: added feature shallow copy and merged copy methods | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 0be64d0 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/0be64d0b50932dfe450e81d79c0a4155e25e5ec2 | 16:10 |
| shogun-notifier- | shogun: made the data manager work with shallow copy | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * ac7824c / tests/unit/statistical_testing/ (2 files): https://github.com/shogun-toolbox/shogun/commit/ac7824cb8dfe23b5a0a15fa320a27def3fc1b1e7 | 16:10 |
| shogun-notifier- | shogun: added kernel selection unit tests | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 66ae417 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/66ae417b88ab65a84ccfd656aa73a5ac6f1fecd4 | 16:10 |
| shogun-notifier- | shogun: added block data structure | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * a2e9fa4 / src/shogun/statistical_testing/internals/ (2 files): https://github.com/shogun-toolbox/shogun/commit/a2e9fa482d38fc7be82c5529c0792121977b3f88 | 16:10 |
| shogun-notifier- | shogun: updated next samples data structure with blocks | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 97fe4d5 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/97fe4d5cf5eca2f9269132ce39ef2e2d0dbd2c3c | 16:10 |
| shogun-notifier- | shogun: updated data fetchers to return naked pointers | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 8e0b2d9 / src/shogun/statistical_testing/internals/DataManager.cpp: https://github.com/shogun-toolbox/shogun/commit/8e0b2d948db91e5a95acb11e12db4eeb350f080b | 16:10 |
| shogun-notifier- | shogun: updated data manager to work with blocks | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 3812302 / src/shogun/statistical_testing/HypothesisTest.cpp: https://github.com/shogun-toolbox/shogun/commit/3812302da6e89ef8dd3c052e94464a9c7374e9b5 | 16:10 |
| shogun-notifier- | shogun: removed unused variable result | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 3faa8ef / src/shogun/statistical_testing/ (2 files): https://github.com/shogun-toolbox/shogun/commit/3faa8efe00b08620a0fdd9cf844750e675590b17 | 16:10 |
| shogun-notifier- | shogun: some clean ups | 16:10 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 68e6292 / examples/meta/src/statistical_testing/ (2 files): https://github.com/shogun-toolbox/shogun/commit/68e6292f78076bb25d3b2b0a681dc0d31c255d40 | 16:10 |
| shogun-notifier- | shogun: added compiling (but not running) examples of kernel selection for MMD | 16:10 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 1cb3688 / doc/cookbook/source/examples/statistical_testing/linear_time_mmd_kernel_selection.rst: https://github.com/shogun-toolbox/shogun/commit/1cb3688d676442419355fb6a20e1a1804175ade3 | 16:10 |
| shogun-notifier- | shogun: initial sketch for kernel learning example | 16:10 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * c60f971 / doc/ipython-notebooks/ (2 files): https://github.com/shogun-toolbox/shogun/commit/c60f9710a4bc0a2f03550785951a082b9feb6144 | 16:10 |
| shogun-notifier- | shogun: rename folder | 16:10 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * a90b8b8 / examples/meta/src/statistical_testing/quadratic_time_mmd_kernel_selection.sg: https://github.com/shogun-toolbox/shogun/commit/a90b8b82a2cc4ec34399e493a9ef0e0d414e8192 | 16:10 |
| shogun-notifier- | shogun: use different data in testing than in kernel learning | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 3a5d463 / / (9 files): https://github.com/shogun-toolbox/shogun/commit/3a5d4630067d6b1cde5a0e47776c3fcfbd944b27 | 16:10 |
| shogun-notifier- | shogun: renamed OPTIMIZE_MMD to MAXIMIZE_POWER in kernel selection | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 43a2dd0 / src/shogun/statistical_testing/MMD.cpp: https://github.com/shogun-toolbox/shogun/commit/43a2dd04214795e6bdc228b343a32ec557097e4e | 16:10 |
| shogun-notifier- | shogun: removed precomputed kernels (if there are any) while selecting kernel | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 3b85bdb / src/shogun/statistical_testing/MMD.cpp: https://github.com/shogun-toolbox/shogun/commit/3b85bdb751661c31eb13e335d921494bfbd87285 | 16:10 |
| shogun-notifier- | shogun: added statistic and Q computation methods | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 0d80347 / src/shogun/statistical_testing/ (14 files): https://github.com/shogun-toolbox/shogun/commit/0d80347063f3b99e5682bd550fe8991e6a282d9f | 16:10 |
| shogun-notifier- | shogun: added weighted kernel learning methods | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 381b1cf / src/shogun/statistical_testing/internals/OptimizationSolver.cpp: https://github.com/shogun-toolbox/shogun/commit/381b1cf1f45906786328ea56713444720374037c | 16:10 |
| shogun-notifier- | shogun: added median heuristic for kernel selection for quadratic time mmd | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * c80439f / src/shogun/statistical_testing/ (6 files): https://github.com/shogun-toolbox/shogun/commit/c80439f62b66db634abde07cbb02ee4718d72b80 | 16:10 |
| shogun-notifier- | shogun: added support for cross-validation setting for kernel selection (incomplete) | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 46684ab / / (20 files): https://github.com/shogun-toolbox/shogun/commit/46684abcbfbbed10e9f72a4d623db03f129c13f0 | 16:10 |
| shogun-notifier- | shogun: made the enum classes in statistical testing simple enums | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * a1cdd9e / / (6 files): https://github.com/shogun-toolbox/shogun/commit/a1cdd9ef2cfccdb5b80b0c3fd61e2ceee1da705c | 16:10 |
| shogun-notifier- | shogun: added first draft of train-test data split | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 9504a46 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/9504a467a7a506743e78965800abd20ca9fa6a95 | 16:10 |
| shogun-notifier- | shogun: fixed clone subset stack bug in features util | 16:10 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 389742b / / (4 files): https://github.com/shogun-toolbox/shogun/commit/389742bd338158b93096bc69b42cce2a22056d73 | 16:10 |
| shogun-notifier- | shogun: full and blockwise train/test data fetchers fixed | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * cc6ace4 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/cc6ace43359cb7dbb53f8e3c150c509422aea609 | 16:11 |
| shogun-notifier- | shogun: fixed memory bug for streaming data parser and added unit-test | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 53951dc / / (5 files): https://github.com/shogun-toolbox/shogun/commit/53951dc2d296487df1bcbd69bce4ef0343f25d9d | 16:11 |
| shogun-notifier- | shogun: full and blockwise train/test streaming data fetchers added | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * eb3c8a1 / / (11 files): https://github.com/shogun-toolbox/shogun/commit/eb3c8a18472f9dab120b4e0f055abb3cb336e3ca | 16:11 |
| shogun-notifier- | shogun: intermediate work for test-train data split | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 96d5b94 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/96d5b9496e82019f0a0f05cf0ca36ba0b87b9646 | 16:11 |
| shogun-notifier- | shogun: save the kernel selection policy | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * eb726fc / src/shogun/statistical_testing/ (16 files): https://github.com/shogun-toolbox/shogun/commit/eb726fccba785fdcdbdd0f4c74ec60fae3d6a801 | 16:11 |
| shogun-notifier- | shogun: save the kernel selection measures for later query | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 2e141e3 / src/shogun/statistical_testing/internals/ (6 files): https://github.com/shogun-toolbox/shogun/commit/2e141e38c11de7a070ff3f31cd5c679d6e7dc4d6 | 16:11 |
| shogun-notifier- | shogun: refactored maximize cross validation kernel selection method | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * ee67b7c / src/shogun/statistical_testing/ (6 files): https://github.com/shogun-toolbox/shogun/commit/ee67b7ce7ba9249c4ebde65e3bed79e940005d2c | 16:11 |
| shogun-notifier- | shogun: refactor API (incomplete) | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 055ca1f / / (31 files): https://github.com/shogun-toolbox/shogun/commit/055ca1faf51f01e367d90422924124d74658ce94 | 16:11 |
| shogun-notifier- | shogun: refactored train/test subsetting and hypothesis test framework | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * bce64e2 / src/interfaces/modular/Statistics.i,src/interfaces/modular/Statistics_includes.i: https://github.com/shogun-toolbox/shogun/commit/bce64e213a4f0a9db784fa144943a76fea99d93e | 16:11 |
| shogun-notifier- | shogun: added kernel selection strategy in modular interface | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * c7b3c81 / / (8 files): https://github.com/shogun-toolbox/shogun/commit/c7b3c815aaf2e8540e312e809f36b244bb2982ba | 16:11 |
| shogun-notifier- | shogun: refactored the interface for specifying kernel selection strategy | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 13aaf83 / src/shogun/statistical_testing/internals/MaxXValidation.cpp: https://github.com/shogun-toolbox/shogun/commit/13aaf83629b6280123d571cd9d9b8c8b8cc518cf | 16:11 |
| shogun-notifier- | shogun: fixed cross validation bug | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 90713e1 / / (41 files): https://github.com/shogun-toolbox/shogun/commit/90713e1940da41731c64d9a6e51ab5217df3eb7c | 16:11 |
| shogun-notifier- | shogun: refactored directory structure | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * e0a1210 / tests/unit/statistical_testing/ (5 files): https://github.com/shogun-toolbox/shogun/commit/e0a1210d60f51efbe845778efe2af55be9036641 | 16:11 |
| shogun-notifier- | shogun: removed some debug messages from cross-validation | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 444aa1b / src/shogun/ (8 files): https://github.com/shogun-toolbox/shogun/commit/444aa1ba0a295d6acc786f68576f2d19edd96cf1 | 16:11 |
| shogun-notifier- | shogun: added multi kernel permutation test cross validation | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 7ea6c7f / / (5 files): https://github.com/shogun-toolbox/shogun/commit/7ea6c7f01f47d07b83164f55c0e3842ef5a60cfb | 16:11 |
| shogun-notifier- | shogun: fixed alpha bug ;) | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 6a04a67 / / (7 files): https://github.com/shogun-toolbox/shogun/commit/6a04a672f3844b8af8e4b471bd70f1f47c48b1af | 16:11 |
| shogun-notifier- | shogun: added multi-kernel mmd computation to public API | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 726a87e / / (2 files): https://github.com/shogun-toolbox/shogun/commit/726a87efdfa627c1e4358efd8dab6e6686408c5a | 16:11 |
| shogun-notifier- | shogun: optimized multi kernel permutation test cross validation | 16:11 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 71c5917 / src/shogun/statistical_testing/ (12 files): https://github.com/shogun-toolbox/shogun/commit/71c591702c3f1e77f350efc84e85ff0854d4f5b0 | 16:11 |
| shogun-notifier- | shogun: make all enums be classes | 16:11 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 5066fc6 / src/shogun/statistical_testing/internals/mmd/MultiKernelMMD.cpp: https://github.com/shogun-toolbox/shogun/commit/5066fc62ae6146a72d0bfaedbb6989cedbe2925b | 16:11 |
| shogun-notifier- | shogun: fix another merge conflict from enum refactoring | 16:11 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * ae6ec3b / examples/meta/generator/targets/cpp.json: https://github.com/shogun-toolbox/shogun/commit/ae6ec3b462ed0f4a496a83268dcf1f5bda7cdbc8 | 16:11 |
| shogun-notifier- | shogun: fix wrong json grammar | 16:11 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * 3c8ebdc / / (7 files): https://github.com/shogun-toolbox/shogun/commit/3c8ebdcd7844884a84d3b2bff5abf502f77e7869 | 16:11 |
| shogun-notifier- | shogun: refactored kernel testing cookbook and meta examples | 16:11 |
| shogun-notifier- | shogun: Heiko Strathmann :feature/bigtest * e66359f / examples/meta/generator/targets/cpp.json: https://github.com/shogun-toolbox/shogun/commit/e66359f2767a649ae0f82a91b8a65d6c19c45bd3 | 16:11 |
| shogun-notifier- | shogun: fixed multi-kernel perform test unit-test | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * bd444c3 / src/shogun/statistical_testing/internals/mmd/ (3 files): https://github.com/shogun-toolbox/shogun/commit/bd444c35c8468673ded2b9864af18adcab56c96b | 16:11 |
| shogun-notifier- | shogun: refactored mmd internal computation components | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * b766140 / / (19 files): https://github.com/shogun-toolbox/shogun/commit/b76614032d1c6fdbd53256b673aadd1ae526d813 | 16:11 |
| shogun-notifier- | shogun: more refactoring and internals cleanup for MMD | 16:11 |
| shogun-notifier- | shogun: | 16:11 |
| shogun-notifier- | shogun: - removed BiasedFull, UnbiasedFull and UnbiasedIncomplete classes | 16:11 |
| shogun-notifier- | shogun: - different statistic types are taken care of in ComputeMMD class | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 156fe34 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/156fe34e5e5a51576b6d939618de80b233ec634f | 16:11 |
| shogun-notifier- | shogun: removed MultiKernelMMD class, put in ComputeMMD class itself | 16:11 |
| shogun-notifier- | shogun: lambday :feature/bigtest * ce190ce / / (11 files): https://github.com/shogun-toolbox/shogun/commit/ce190ce641f5c5d407c843c497eca518fdc1de5e | 16:12 |
| shogun-notifier- | shogun: More refactoring for statistical testing internals | 16:12 |
| shogun-notifier- | shogun: | 16:12 |
| shogun-notifier- | shogun: - removed WithinBlockPermutationBatch and MultiKernelPermutationTest | 16:12 |
| shogun-notifier- | shogun: - Both single kernel and multi-kernel cases are now handled in | 16:12 |
| shogun-notifier- | shogun: PermutationMMD | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 427580b / src/shogun/statistical_testing/ (8 files): https://github.com/shogun-toolbox/shogun/commit/427580bcbfc347b8b0fcd378cec6dd63dd30e0a5 | 16:12 |
| shogun-notifier- | shogun: refactored cross-validation permutation MMD | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 8634f3c / / (3 files): https://github.com/shogun-toolbox/shogun/commit/8634f3c2c9821b0baeb328acf49b7bb80393e924 | 16:12 |
| shogun-notifier- | shogun: updated multikernel mmd2 to have the same api as single kernel | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 2c8a8f4 / src/shogun/io/streaming/InputParser.h: https://github.com/shogun-toolbox/shogun/commit/2c8a8f463af9a7ae152abae7141dd640e300d2e1 | 16:12 |
| shogun-notifier- | shogun: fixed input parser segfault bug for streaming generators | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * c6d3efd / src/shogun/statistical_testing/ (3 files): https://github.com/shogun-toolbox/shogun/commit/c6d3efdf044d3b9d1f66b3085836899335278f96 | 16:12 |
| shogun-notifier- | shogun: made multi-kernel MMD work when the features are updated | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 84d80da / examples/meta/generator/targets/cpp.json: https://github.com/shogun-toolbox/shogun/commit/84d80daa8b047d23ade86715694a194a475c7697 | 16:12 |
| shogun-notifier- | shogun: fixed enum class generation in meta examples | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 55edafd / / (6 files): https://github.com/shogun-toolbox/shogun/commit/55edafddfbc84aa06c3fb9fa775d4e0c6b323148 | 16:12 |
| shogun-notifier- | shogun: added variance under alternative for quadratic time mmd | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * a03d443 / src/shogun/statistical_testing/internals/mmd/VarianceH1.h: https://github.com/shogun-toolbox/shogun/commit/a03d443a671e6d5910cad96e66cb77e2570174ef | 16:12 |
| shogun-notifier- | shogun: prepare variance h1 for multikernel processing | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * cf03a3c / / (2 files): https://github.com/shogun-toolbox/shogun/commit/cf03a3c4235333ba95e463725f41a21f4a9d6d69 | 16:12 |
| shogun-notifier- | shogun: debugged variance under h0 for mmd | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * 5bbe988 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/5bbe988c08cee29ae181ebdde8c95dc3ea5f7472 | 16:12 |
| shogun-notifier- | shogun: enabled variance under h1 computation without precomputing the kernel | 16:12 |
| shogun-notifier- | shogun: lambday :feature/bigtest * bbcc40f / / (6 files): https://github.com/shogun-toolbox/shogun/commit/bbcc40fc4854706c959c0f0a22796edc2f3f0477 | 16:12 |
| shogun-notifier- | shogun: added multikernel variance h1 estimation | 16:12 |
| c4goldsw | HeikoS the LARS cleanup patch is in. | 16:20 |
| c4goldsw | Travis is building it. | 16:20 |
| c4goldsw | I've also started work to make LDA support float types (I'll be following the exact same process as I did for LARS). | 16:21 |
| c4goldsw | Also, how can I make a contribution to the news file? | 16:22 |
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| travis-ci | it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/148318732 | 16:30 |
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| shogun-notifier- | shogun: lambday :feature/bigtest * 254e237 / src/interfaces/modular/Statistics.i,src/interfaces/modular/Statistics_includes.i: https://github.com/shogun-toolbox/shogun/commit/254e237a10c5f6424e52563341f0bdea6af40de2 | 16:32 |
| shogun-notifier- | shogun: added base class streaming MMD to the interface | 16:32 |
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| c4goldsw | ping HeikoS | 17:53 |
| c4goldsw | ping wiking | 17:55 |
| Saurabh7 | yo | 17:55 |
| Saurabh7 | HeikoS: yyoyo | 17:55 |
| Saurabh7 | c4goldsw: you can just make your addition to the NEWS file | 17:56 |
| c4goldsw | Saurabh7 Cool, I'll do that then. Also, do you have a moment? | 17:57 |
| Saurabh7 | sure | 17:57 |
| c4goldsw | Great, it's a C++ syntax question. Take this:https://gist.github.com/c4goldsw/a29d0fe0415bdcff925619af942a0df9#file-lda-cpp-L201 | 17:58 |
| c4goldsw | I'm getting the error that Constant() isn't a method of EigenVectorXt. The definition for that is here: | 17:58 |
| c4goldsw | https://github.com/shogun-toolbox/shogun/blob/develop/src/shogun/lib/SGVector.h#L40 | 17:59 |
| c4goldsw | Do you know what this is happening? | 17:59 |
| c4goldsw | The actual error is "no type named Constant" in EigenVectorXt | 18:00 |
| c4goldsw | Saurabh7 I've found this:http://stackoverflow.com/questions/19128796/why-can-i-call-base-template-class-method-from-derived-class, I think I should be fine | 18:06 |
| c4goldsw | http://stackoverflow.com/questions/19128796/why-can-i-call-base-template-class-method-from-derived-class | 18:06 |
| Saurabh7 | ah | 18:08 |
| Saurabh7 | yeah looks like its due to the templated eigen matrix | 18:08 |
| Saurabh7 | not sure how to solve that | 18:09 |
| Saurabh7 | setConst doesnt work too ? | 18:09 |
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| travis-ci | it's lambday's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/148325938 | 18:39 |
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| shogun-notifier- | shogun: lambday :feature/bigtest * 6b6036b / / (25 files): https://github.com/shogun-toolbox/shogun/commit/6b6036b3cf455e7486ed0f94c9551753de015006 | 19:17 |
| shogun-notifier- | shogun: changed enum classes to plain enums for statistical tests | 19:17 |
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| travis-ci | it's lambday's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/148369005 | 19:59 |
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| --- Log closed Sat Jul 30 00:00:44 2016 | ||
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