IRC logs of #shogun for Monday, 2018-06-04

« Sunday, 2018-06-03 Index Tuesday, 2018-06-05 »
--- Log opened Mon Jun 04 00:00:35 2018
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@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4326 opened by vinx1305:25
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@sukey[https://github.com/shogun-toolbox/shogun] Issue https://github.com/shogun-toolbox/shogun/issues/4308 closed by vigsterkr11:38
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4325 merged by vigsterkr11:38
@sukey[https://github.com/shogun-toolbox/shogun] New commit https://github.com/shogun-toolbox/shogun/commit/cd08c4ee16dc02e9d64e3ba7be7fcb734de0f0de by vigsterkr11:38
-shogun-buildbot:#shogun- Build deb4 - python3 #444 is complete: Failure [failed python (failure)] - http://buildbot.shogun-toolbox.org:8080/#builders/28/builds/44411:49
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--- Log closed Mon Jun 04 12:15:55 2018
--- Log opened Mon Jun 04 12:16:05 2018
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@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4305 synchronized by shubham80812:39
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@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4327 opened by shubham80812:52
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@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4206 synchronized by FaroukY14:35
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4206 synchronized by FaroukY14:38
Faroukwiking, you here?14:41
wuweiwiking: hi15:10
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4326 synchronized by vinx1315:14
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lisitsynwhat's going on :P15:51
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FaroukHeikoS: Hi16:19
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@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4317 synchronized by vinx1316:23
@HeikoSFarouk: hihi16:27
@HeikoShow are things?16:27
@HeikoSshubham808: hi16:27
shubham808HeikoS: hey16:27
Faroukgood good. working on porting SGDMinimizer to use stan now. However, I have a question on the cookbook. After I updated my shogun-data, I noticed binary_perceptron.dat was changed in shogun data16:28
Faroukeven though I never touched it16:28
@HeikoSFarouk: there are two ways to change it16:29
@HeikoSupdating the data submodule16:29
@HeikoSand changing the file16:29
@HeikoSFarouk: but I think you can just ignore this or?16:29
FaroukNot sure, because it caused a conflict in the branch.16:30
FaroukIts already merged in shogun-data16:30
Faroukthe cross_validation.dat16:30
@HeikoSI am not sure what you are trying to do or what you are being blocked16:31
@HeikoSbut you can always git reset the data submodule16:31
@HeikoSand then do your changes again16:31
FaroukAlright I'll try that16:32
shubham808HeikoS: hey16:33
@HeikoSFarouk: let me know if you have problems16:33
@HeikoSshould not block you in any way16:33
@HeikoSif it does, ask again :)16:33
@HeikoSshubham808: whats up?16:33
shubham808about the garbage collection pr16:33
shubham808valgrind ctest -R generated* --without-pymalloc --leak-check=full16:34
shubham808does not detect anything16:34
@HeikoSshubham808: and how does that change from before?16:35
@HeikoSbefore the patch I mean16:35
shubham808i have to check with the pymalloc flag16:36
shubham808(for before the patch)16:36
@HeikoSkk16:38
shubham808another thing16:38
shubham808for feature block logistic regression cookbook16:39
shubham808i am stuck at a place16:39
@HeikoSyep16:40
@HeikoShave something I can look at?16:40
shubham808https://github.com/shubham808/shogun/blob/fba2d9ec06e545f42fb1b3f212f6956b1f7e0585/examples/meta/src/binary/feature_block_logistic_regression.sg#L2116:40
@HeikoSFarouk: I now see your conflict16:41
@HeikoSso what you need to do16:41
@HeikoS1.) locally reset your data repo to master16:41
@HeikoS2.) generate the file from your example and copy it into the data repo16:41
FaroukAlright I see16:42
@HeikoS(or actually, since wiking has already merged the file, no need to do that if you have resetted it to master)16:42
@HeikoS3.) commit the data version in your 4206 PR16:42
FaroukI did, when travis tests, does it install the .dat files from shogun-data?16:42
@HeikoSthen the conflict will be gone16:42
@HeikoSyes it does16:42
@HeikoSit pulls the commit with the hash that is in the submodule shogun/data16:42
FaroukOhhh I see16:43
@HeikoSFarouk: you can see that in the travis logs16:43
@HeikoShttps://travis-ci.org/shogun-toolbox/shogun/jobs/386990066#L44616:43
@HeikoSeg here16:43
@HeikoSit tells you exactly which commit it checks out16:43
@HeikoSand that is the same as in the submodule that you update in the main repo16:43
@HeikoSFarouk: let's aim to merge this now16:44
FaroukAlright I'll give it a go now16:44
@HeikoSFarouk: as in the next few minutes16:44
FaroukI am pausing other work16:44
@HeikoSas this has been open to long :)16:44
FaroukYep, I agree :)16:45
@HeikoSso give it a try and let me know what happens16:45
FaroukSure, trying now16:45
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shogitter(shubham808) Heiko hey I switched to shogitter16:46
shogitter(shubham808) Something went wrong on my pc16:47
shogitter(shubham808) U see the line of code above ?16:48
@HeikoSlol ok16:48
@HeikoSchecking the code16:49
@HeikoSyes the factory16:49
@HeikoSwhats the prob?16:49
shogitter(shubham808) So the feature_relation is expects a indexblockrelation pointer16:49
shogitter(shubham808) But what we are passing is some<indexblockgroup>16:50
shogitter(shubham808) U see the problem?16:51
@HeikoSnot yet16:51
@HeikoSah16:51
@HeikoSbase class vs specialised class16:51
shogitter(shubham808) Yep16:51
@HeikoSah ok16:51
shogitter(shubham808) I tried adding a new base class16:51
@HeikoSsure that needs fixing for meta examples16:51
@HeikoSeverything should be done via base class16:51
shogitter(shubham808) Yes yes16:51
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4206 synchronized by FaroukY16:51
shogitter(shubham808) But then I won't be able to use block_add(block1) anymore16:52
@HeikoSso you need a factory that instantiates the group16:52
@HeikoSuh16:52
@HeikoSbecause that is specialised method?16:52
shogitter(shubham808) Yes16:52
@HeikoSi see16:52
@HeikoSlet me think a moment16:52
@HeikoSinteresting problem16:53
shogitter(shubham808) So then I tried to do a put_add thingy we did for combined kernel16:53
@HeikoSyes16:53
@HeikoSthat would be my first relfex as well16:53
shogitter(shubham808) But that would mean making block group a base too16:53
@HeikoSbut we have add only for objects16:53
shogitter(shubham808) Since only base can be "added" to base16:53
@HeikoSlet me stare at the example for a bit16:53
shogitter(shubham808) Okay ?16:54
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4317 synchronized by vinx1316:55
shogitter(shubham808) Hey I will get set up for meeting let's take this up there16:55
@HeikoSok16:55
@HeikoSsee you in 516:55
@HeikoSI attached a hangout call to the invite16:55
@HeikoSlet's meet in there16:55
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4206 synchronized by FaroukY16:55
@HeikoSlisitsyn: you there?16:56
shogitter(shubham808) In 10 ? my pc is still weird16:56
@HeikoSok :D16:56
@HeikoSFarouk: still conflicting16:57
@HeikoSyou need to make sure your data submodule is resetted to the shogun-data/master head16:57
@HeikoSyou branched at some point16:57
FaroukHeikoS: I think the problem is that there is another pr that is changing averaged_perceptron.dat and perceptron.dat16:57
FaroukI did16:57
@sukey[https://github.com/shogun-toolbox/shogun] Issue https://github.com/shogun-toolbox/shogun/issues/4328 vigsterkr added label: "SWIG"16:57
@sukey[https://github.com/shogun-toolbox/shogun] Issue https://github.com/shogun-toolbox/shogun/issues/432816:57
Faroukits resetted to shogun-data/head16:57
@sukey[https://github.com/shogun-toolbox/shogun] Issue https://github.com/shogun-toolbox/shogun/issues/4328 opened by vigsterkr16:57
@HeikoSFarouk: no thats not the problem16:57
@HeikoSit is a simple git merge conflict16:58
@HeikoSwhich means you are in a different branch than the develop branch16:58
@HeikoSyou will need to fully regenerate your commit with the .dat file16:58
@HeikoSor merge the conflict locally16:58
rcurtinHeikoS: ping re: MLOSS workshop :)17:00
rcurtindeadline is the 11th, just wanted to see what you were thinking17:00
@wiking:)17:01
@wikingrcurtin, morning :)17:01
wuweiwiking: hi17:01
rcurtinmorning to you also... although it is almost lunchtime here.  I am not the earliest riser in the world...17:01
@wikingwuwei, yoyoyo17:01
@wikingrcurtin, :>17:01
wuweiwiking: have u seen the broken tests of my cookbook pr? because transformer branch is out of date17:02
wuweiwiking: shall we have a new branch for transformer in shogun-data?17:03
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@wikingmmmm we ccould17:03
@wikingbut first i wanna rebase that branch :)17:03
@wikinglemme merge the inverse transform bracnh17:04
@wikingand rebase the feature branch17:04
@wikingok?17:04
wuweiyeah sure17:04
@sukey[https://github.com/shogun-toolbox/shogun] vigsterkr pushed 4 commits:17:04
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/41659b8274cbbf735e75c6170205f00e544f4cba17:04
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/b45c31eb0407c7a60760dfd69e08389fda16ad9a17:04
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/84c1cde758d1a8752fbcc14694464c58f6177eb217:04
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/45162b6952051839f8a908983f6100cea080582117:04
@sukey[https://github.com/shogun-toolbox/shogun] Pull Request https://github.com/shogun-toolbox/shogun/pull/4326 merged by vigsterkr17:04
@wikinghehehe rebase problem17:05
@wikinglemme resolve it17:05
@wiking :)17:05
wuweiwell.. have you seen the one failing test in inverse_transform17:06
@wikingnoup17:06
wuweia bit weird, not sure about that17:07
@sukey[https://github.com/shogun-toolbox/shogun] vigsterkr pushed 67 commits:17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/5766fd9438ea89c9dea641cdd3970badae74b2e617:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/bf0e5c82bf1bfb9d5e1424ab70bd25d709100d8317:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/c13a5f3b06ac3f2b2d19342ae6d61dd2e42d4bd517:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/46eab927c4f425c4bf4687fc2626c51fd93d0d0617:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/727384a6dc8ee66177a3ffae2276086b7faf560917:10
@wikingwuwei, ^ rebased the feature branch17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/0deb4c6d280eec57cbb0ce3389aae381d850d9a317:10
@wiking:)17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/23c34e9f210df1f24def971d61db156c4990386f17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/ca8397d9199648fcff2ce0e07c8b30007a7d2d6d17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/eb3c7af4579f523cc99922c1841c5faef455752a17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/a1084d46b627bacde66e513e3292890128591d9217:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/88a110c89ba5982178f5b4772766d2749c4dbe3717:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/b243db9a871ca0673cd0dc83fc1377d81c65c4f517:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/bf4b21f36c241cb52ce002651740ede6a7514fc417:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/b4ed9e01110b740256ee3193be9e27ecf95de7a917:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/080e2d776b0e305f9c2f5c6aca6e3c0e9bb25bad17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/e30eba40394e8621d3e71903591fdf28a7a5230517:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/f5638480f2147734eee67321f0ace8b7b524547e17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/a8c232d7b07a2d6c8f435e71a6dbe5b188cf16bd17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/bd6fbb6c9e1b039032d8d964edc835d470a95f3b17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/b3ac8ec37692482cb809985966c9252cc1c8429917:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/8a3e4d4346a344cf33798dfd5ca583576d61021b17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/11e72d664201ec28000d37b0b77215da80b464f317:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/4b6f6bbb61aba36de9fc4c20370f6953a1aa7aab17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/b9f907ea6daa67bedb708dbabe03282fb49a707517:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/752aab19a7bb40aa80c62985c61418a345e2153817:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/788b1ccc8701ed9ac13066f9b6e04cb0b6bd903c17:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/d26eca7073371906c7cf320ce2712075c35246f017:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/9d875ede5ce6399cdaf702143428939f84848b9117:10
@sukeyhttps://github.com/shogun-toolbox/shogun/commit/ba362a027b79247133d4acf47331deff10e5202d17:10
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wuweigreat, thanks!17:10
@wikingso you'l have to rebase https://github.com/shogun-toolbox/shogun/pull/431717:11
@wikingand the other stuff :)))17:11
FaroukHeikoS: Alright conflict fixed17:16
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travis-ciit's Wuwei Lin's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/38783635517:18
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travis-ciit's Wuwei Lin's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/38783635517:19
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@wikingwuwei, ping17:34
wuweiwiking: hi17:35
@wikingwuwei, can u do a quick test with a swig interface (say python) that if you throw from a pipeline an std::invalid_argument what happens17:35
@wiking(use python shell to do the test)17:35
@wikingi would think that in that you will exit from python shell17:35
@wikingbut maybe i'm wrong17:35
@wikingin case of ShogunException that does not happen17:36
wuweisure17:36
@wikingi hope this will kick in17:40
@wikinghttps://github.com/swig/swig/blob/master/Lib/typemaps/exception.swg17:40
@wikinghttps://github.com/swig/swig/blob/master/Lib/typemaps/exception.swg#L6017:40
@wikingbut lets just check17:42
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wuweiwiking: python exited after exception17:59
wuweiterminate called after throwing an instance of 'std::invalid_argument'17:59
wuweiwhat():  error17:59
wuwei[1]    14037 abort (core dumped)  python17:59
@HeikoSwiking: jojo18:09
@HeikoSwiking: there is some discussion necessary regarding black box stuff18:10
@HeikoSregarding what makes the state of the model18:10
@HeikoSand whether it might be good to have some kind of internal API to update model state18:10
@HeikoSsince otherwise it is hard to expose/catch18:10
@HeikoSthings like18:11
@HeikoSnumber of iterations18:11
@HeikoSare usually just temporary variables18:11
@HeikoSso exposing them (say to progress bar) happens manually18:11
@HeikoSfor iterations it might not be a big issue18:11
@HeikoSbut there might be cases where temporary variables are an issue18:11
@HeikoSnext thing is that we somehow want to ensure that stopped models are seirlilizable with the temporary state they are in18:12
@HeikoShowever, that is basically impossible to test if the train method just directly updates state variables (or not)18:12
@HeikoSif there was some kind of API like18:12
@HeikoSto update the state in an iteration18:13
@HeikoSthen one could hitchhike this and connect things for testing and exposing these numbers18:13
@HeikoSmaybe we can discuss this tomorrow at stammtisch18:13
@HeikoSFarouk: how is that data PR giong? :D18:13
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lisitsynHeikoS: hey18:56
@HeikoSlisitsyn: hi!18:56
@HeikoSlisitsyn: I have a few qs for you18:56
@HeikoShave some time?18:56
lisitsynyeah18:56
lisitsynI am back18:57
@HeikoScool18:58
@HeikoSsooo19:02
@HeikoSlisitsyn: first thing: https://github.com/shubham808/shogun/blob/fba2d9ec06e545f42fb1b3f212f6956b1f7e0585/examples/meta/src/binary/feature_block_logistic_regression.sg#L2119:02
@HeikoSlisitsyn: your index block API is quite hard to represent with factories and base classes19:02
@HeikoSas in order to build them, one needs to call methods on specialised class19:03
@HeikoSwe could have another "add" extension, but I wonder whether an OO interface is the right thing here19:03
@HeikoSmaybe rather index based?19:03
FaroukHeikoS: It's done now, fixed the conflict19:08
FaroukWaiting for travis19:09
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travis-ciit's Wuwei Lin's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/38783920019:10
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@HeikoSFarouk: cool nice one :)19:10
FaroukTurns out like you said, I had committed the head before, so I just undid that commit, then reset data head, then commit again, and it was good19:11
@HeikoSnice19:11
@HeikoSsomething learnt about git :)19:11
FaroukYeah :)19:11
rcurtinHeikoS: thanks for the email update :)19:12
@HeikoSrcurtin: welcome :)19:13
@HeikoSrcurtin: lisitsyn suggested another speaker from yandex19:13
@HeikoSbut I will wait for the other ones to get back first19:13
rcurtinsure, no problem, and if you'd like me to reach out to anyone just let me know19:14
@HeikoScool19:16
@HeikoSrcurtin: how is gsoc going?19:17
rcurtinit's going well so far, this year we have six students19:17
rcurtinso far less insane than last year's 10 students19:17
rcurtinby the way, I also know Misha Bilenko at Yandex, he keeps saying hi to me at conferences.  he led the development of catboost, so we could also reach out to him (and maybe also Anna too), your call19:18
@HeikoSthat is quite inline with what sergey suggested, so its on the "try next" list :)19:19
rcurtinJohn Langford I think would be a good person that people would show up for, but I don't know if he'd accept.  he is pretty busy so he may have other things to do19:20
rcurtinbut I guess we only need a couple speakers, not 20 :)19:20
@HeikoShaha yes indeed19:21
lisitsynbilenko is a big shot :)19:25
lisitsynHeikoS: let me take a look19:26
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--- Log closed Tue Jun 05 00:00:36 2018
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