| add_example_to_single_tree(int32_t idx, float64_t weight, int32_t tree_num) | CWeightedDegreePositionStringKernel | protected |
| add_example_to_tree(int32_t idx, float64_t weight) | CWeightedDegreePositionStringKernel | protectedvirtual |
| add_to_normal(int32_t idx, float64_t weight) | CWeightedDegreePositionStringKernel | virtual |
| alphabet | CWeightedDegreePositionStringKernel | protected |
| block_computation | CWeightedDegreePositionStringKernel | protected |
| block_weights | CWeightedDegreePositionStringKernel | protected |
| build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict) | CSGObject | |
| cache_kernel_row(int32_t x) | CKernel | |
| cache_multiple_kernel_rows(int32_t *key, int32_t varnum) | CKernel | |
| cache_reset() | CKernel | |
| cache_size | CKernel | protected |
| CKernel() | CKernel | |
| CKernel(int32_t size) | CKernel | |
| CKernel(CFeatures *l, CFeatures *r, int32_t size) | CKernel | |
| cleanup() | CWeightedDegreePositionStringKernel | virtual |
| cleanup_POIM2() | CWeightedDegreePositionStringKernel | |
| clear_normal() | CWeightedDegreePositionStringKernel | virtual |
| clone() | CSGObject | virtual |
| combined_kernel_weight | CKernel | protected |
| compute(int32_t idx_a, int32_t idx_b) | CWeightedDegreePositionStringKernel | protectedvirtual |
| compute_abs_weights(int32_t &len) | CWeightedDegreePositionStringKernel | |
| compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0) | CWeightedDegreePositionStringKernel | virtual |
| compute_batch_helper(void *p) | CWeightedDegreePositionStringKernel | static |
| compute_by_subkernel(int32_t idx, float64_t *subkernel_contrib) | CWeightedDegreePositionStringKernel | virtual |
| compute_by_tree(int32_t idx) | CWeightedDegreePositionStringKernel | virtual |
| compute_by_tree(int32_t idx, float64_t *LevelContrib) | CWeightedDegreePositionStringKernel | virtual |
| compute_consensus(int32_t &num_feat, int32_t num_suppvec, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | |
| compute_optimized(int32_t idx) | CWeightedDegreePositionStringKernel | virtual |
| compute_POIM(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *poim_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t *distrib) | CWeightedDegreePositionStringKernel | |
| compute_POIM2(int32_t max_degree, CSVM *svm) | CWeightedDegreePositionStringKernel | |
| compute_row_start(int64_t offs, int32_t n, bool symmetric) | CKernel | protected |
| compute_scoring(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *weights) | CWeightedDegreePositionStringKernel | |
| compute_with_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
| compute_without_mismatch(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
| compute_without_mismatch_matrix(char *avec, int32_t alen, char *bvec, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
| compute_without_mismatch_position_weights(char *avec, float64_t *posweights_lhs, int32_t alen, char *bvec, float64_t *posweights_rhs, int32_t blen) | CWeightedDegreePositionStringKernel | protected |
| create_empty_tries() | CWeightedDegreePositionStringKernel | protected |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| CStringKernel(int32_t cachesize=0) | CStringKernel< char > | |
| CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< char > | |
| CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | |
| CWeightedDegreePositionStringKernel(int32_t size, int32_t degree, int32_t max_mismatch=0, int32_t mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
| CWeightedDegreePositionStringKernel(int32_t size, SGVector< float64_t > weights, int32_t degree, int32_t max_mismatch, SGVector< int32_t > shifts, int32_t mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
| CWeightedDegreePositionStringKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t degree) | CWeightedDegreePositionStringKernel | |
| deep_copy() const | CSGObject | virtual |
| degree | CWeightedDegreePositionStringKernel | protected |
| delete_optimization() | CWeightedDegreePositionStringKernel | virtual |
| delete_position_weights() | CWeightedDegreePositionStringKernel | |
| delete_position_weights_lhs() | CWeightedDegreePositionStringKernel | |
| delete_position_weights_rhs() | CWeightedDegreePositionStringKernel | |
| equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false) | CSGObject | virtual |
| extract_w(int32_t max_degree, int32_t &num_feat, int32_t &num_sym, float64_t *w_result, int32_t num_suppvec, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | |
| get_activenum_cache() | CKernel | |
| get_cache_size() | CKernel | |
| get_combined_kernel_weight() | CKernel | |
| get_degree() | CWeightedDegreePositionStringKernel | |
| get_degree_weights(int32_t &d, int32_t &len) | CWeightedDegreePositionStringKernel | |
| get_feature_class() | CStringKernel< char > | virtual |
| get_feature_type() | CStringKernel< char > | virtual |
| get_global_io() | CSGObject | |
| get_global_parallel() | CSGObject | |
| get_global_version() | CSGObject | |
| get_is_initialized() | CKernel | |
| get_kernel_col(int32_t j) | CKernel | virtual |
| get_kernel_diagonal(SGVector< float64_t > preallocated=SGVector< float64_t >()) | CKernel | |
| get_kernel_matrix() | CKernel | |
| get_kernel_matrix() | CKernel | |
| get_kernel_matrix_helper(void *p) | CKernel | protectedstatic |
| get_kernel_row(int32_t i) | CKernel | virtual |
| get_kernel_row(int32_t docnum, int32_t *active2dnum, float64_t *buffer, bool full_line=false) | CKernel | |
| get_kernel_type() | CWeightedDegreePositionStringKernel | virtual |
| get_lhs() | CKernel | |
| get_lhs_equals_rhs() | CKernel | |
| get_max_elems_cache() | CKernel | |
| get_max_mismatch() | CWeightedDegreePositionStringKernel | |
| get_modelsel_names() | CSGObject | |
| get_modsel_param_descr(const char *param_name) | CSGObject | |
| get_modsel_param_index(const char *param_name) | CSGObject | |
| get_name() const | CWeightedDegreePositionStringKernel | virtual |
| get_normalizer() | CKernel | virtual |
| get_num_subkernels() | CWeightedDegreePositionStringKernel | virtual |
| get_num_vec_lhs() | CKernel | virtual |
| get_num_vec_rhs() | CKernel | virtual |
| get_optimization_type() | CKernel | |
| get_parameter_gradient(const TParameter *param, index_t index=-1) | CKernel | virtual |
| get_parameter_gradient_diagonal(const TParameter *param, index_t index=-1) | CKernel | virtual |
| get_POIM2() | CWeightedDegreePositionStringKernel | |
| get_position_weights(int32_t &len) | CWeightedDegreePositionStringKernel | |
| get_rhs() | CKernel | |
| get_subkernel_weights(int32_t &num_weights) | CWeightedDegreePositionStringKernel | virtual |
| CStringKernel< char >::get_subkernel_weights() | CKernel | virtual |
| get_weights(int32_t &num_weights) | CWeightedDegreePositionStringKernel | |
| has_features() | CKernel | virtual |
| has_property(EKernelProperty p) | CKernel | |
| init(CFeatures *l, CFeatures *r) | CWeightedDegreePositionStringKernel | virtual |
| init_block_weights() | CWeightedDegreePositionStringKernel | |
| init_block_weights_const() | CWeightedDegreePositionStringKernel | |
| init_block_weights_cubicpoly() | CWeightedDegreePositionStringKernel | |
| init_block_weights_exp() | CWeightedDegreePositionStringKernel | |
| init_block_weights_from_wd() | CWeightedDegreePositionStringKernel | |
| init_block_weights_from_wd_external() | CWeightedDegreePositionStringKernel | |
| init_block_weights_linear() | CWeightedDegreePositionStringKernel | |
| init_block_weights_log() | CWeightedDegreePositionStringKernel | |
| init_block_weights_sqpoly() | CWeightedDegreePositionStringKernel | |
| init_normalizer() | CKernel | virtual |
| init_optimization(int32_t p_count, int32_t *IDX, float64_t *alphas) | CWeightedDegreePositionStringKernel | virtual |
| init_optimization(int32_t count, int32_t *IDX, float64_t *alphas, int32_t tree_num, int32_t upto_tree=-1) | CWeightedDegreePositionStringKernel | virtual |
| init_optimization_svm(CSVM *svm) | CKernel | |
| io | CSGObject | |
| is_generic(EPrimitiveType *generic) const | CSGObject | virtual |
| is_tree_initialized() | CWeightedDegreePositionStringKernel | |
| kernel(int32_t idx_a, int32_t idx_b) | CKernel | |
| kernel_cache | CKernel | protected |
| kernel_cache_check(int32_t cacheidx) | CKernel | |
| kernel_cache_cleanup() | CKernel | |
| kernel_cache_init(int32_t size, bool regression_hack=false) | CKernel | |
| kernel_cache_reset_lru() | CKernel | |
| kernel_cache_shrink(int32_t totdoc, int32_t num_shrink, int32_t *after) | CKernel | |
| kernel_cache_space_available() | CKernel | |
| kernel_cache_touch(int32_t cacheidx) | CKernel | |
| kernel_matrix | CKernel | protected |
| length | CWeightedDegreePositionStringKernel | protected |
| lhs | CKernel | protected |
| lhs_equals_rhs | CKernel | protected |
| list_kernel() | CKernel | |
| load(CFile *loader) | CKernel | |
| load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
| load_serializable_post() | CWeightedDegreePositionStringKernel | protectedvirtual |
| load_serializable_pre() | CSGObject | protectedvirtual |
| m_gradient_parameters | CSGObject | |
| m_hash | CSGObject | |
| m_model_selection_parameters | CSGObject | |
| m_parameters | CSGObject | |
| m_poim | CWeightedDegreePositionStringKernel | protected |
| m_poim_distrib | CWeightedDegreePositionStringKernel | protected |
| m_poim_num_feat | CWeightedDegreePositionStringKernel | protected |
| m_poim_num_sym | CWeightedDegreePositionStringKernel | protected |
| m_poim_result_len | CWeightedDegreePositionStringKernel | protected |
| max_mismatch | CWeightedDegreePositionStringKernel | protected |
| max_shift | CWeightedDegreePositionStringKernel | protected |
| mkl_stepsize | CWeightedDegreePositionStringKernel | protected |
| normalizer | CKernel | protected |
| num_lhs | CKernel | protected |
| num_rhs | CKernel | protected |
| obtain_from_generic(CSGObject *kernel) | CKernel | static |
| opt_type | CKernel | protected |
| optimization_initialized | CKernel | protected |
| parallel | CSGObject | |
| parameter_hash_changed() | CSGObject | virtual |
| poim_tries | CWeightedDegreePositionStringKernel | protected |
| position_mask | CWeightedDegreePositionStringKernel | protected |
| position_weights | CWeightedDegreePositionStringKernel | protected |
| position_weights_len | CWeightedDegreePositionStringKernel | protected |
| position_weights_lhs | CWeightedDegreePositionStringKernel | protected |
| position_weights_lhs_len | CWeightedDegreePositionStringKernel | protected |
| position_weights_rhs | CWeightedDegreePositionStringKernel | protected |
| position_weights_rhs_len | CWeightedDegreePositionStringKernel | protected |
| prepare_POIM2(SGMatrix< float64_t > distrib) | CWeightedDegreePositionStringKernel | |
| print_modsel_params() | CSGObject | |
| print_serializable(const char *prefix="") | CSGObject | virtual |
| properties | CKernel | protected |
| register_params() | CKernel | protectedvirtual |
| remove_lhs() | CWeightedDegreePositionStringKernel | protectedvirtual |
| remove_lhs_and_rhs() | CKernel | virtual |
| remove_rhs() | CKernel | virtual |
| resize_kernel_cache(KERNELCACHE_IDX size, bool regression_hack=false) | CKernel | |
| rhs | CKernel | protected |
| row_col_wise_sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false) | CKernel | virtual |
| row_wise_sum_squared_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
| row_wise_sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
| save(CFile *writer) | CKernel | |
| save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
| save_serializable_post() | CKernel | protectedvirtual |
| save_serializable_pre() | CKernel | protectedvirtual |
| seq_length | CWeightedDegreePositionStringKernel | protected |
| set_cache_size(int32_t size) | CKernel | |
| set_combined_kernel_weight(float64_t nw) | CKernel | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_global_io(SGIO *io) | CSGObject | |
| set_global_parallel(Parallel *parallel) | CSGObject | |
| set_global_version(Version *version) | CSGObject | |
| set_is_initialized(bool p_init) | CKernel | protected |
| set_normalizer(CKernelNormalizer *normalizer) | CKernel | virtual |
| set_optimization_type(EOptimizationType t) | CKernel | virtual |
| set_position_weights(SGVector< float64_t > pws) | CWeightedDegreePositionStringKernel | virtual |
| set_position_weights_lhs(float64_t *pws, int32_t len, int32_t num) | CWeightedDegreePositionStringKernel | |
| set_position_weights_rhs(float64_t *pws, int32_t len, int32_t num) | CWeightedDegreePositionStringKernel | |
| set_property(EKernelProperty p) | CKernel | protected |
| set_shifts(SGVector< int32_t > shifts) | CWeightedDegreePositionStringKernel | |
| set_subkernel_weights(SGVector< float64_t > w) | CWeightedDegreePositionStringKernel | virtual |
| set_time(int32_t t) | CKernel | |
| set_wd_weights() | CWeightedDegreePositionStringKernel | virtual |
| set_weights(SGMatrix< float64_t > new_weights) | CWeightedDegreePositionStringKernel | |
| shallow_copy() const | CSGObject | virtual |
| shift | CWeightedDegreePositionStringKernel | protected |
| shift_len | CWeightedDegreePositionStringKernel | protected |
| sum_block(index_t block_begin_row, index_t block_begin_col, index_t block_size_row, index_t block_size_col, bool no_diag=false) | CKernel | virtual |
| sum_symmetric_block(index_t block_begin, index_t block_size, bool no_diag=true) | CKernel | virtual |
| tree_initialized | CWeightedDegreePositionStringKernel | protected |
| tries | CWeightedDegreePositionStringKernel | protected |
| type | CWeightedDegreePositionStringKernel | protected |
| unset_generic() | CSGObject | |
| unset_property(EKernelProperty p) | CKernel | protected |
| update_parameter_hash() | CSGObject | virtual |
| use_poim_tries | CWeightedDegreePositionStringKernel | protected |
| version | CSGObject | |
| weights | CWeightedDegreePositionStringKernel | protected |
| weights_buffer | CWeightedDegreePositionStringKernel | protected |
| weights_degree | CWeightedDegreePositionStringKernel | protected |
| weights_length | CWeightedDegreePositionStringKernel | protected |
| which_degree | CWeightedDegreePositionStringKernel | protected |
| ~CKernel() | CKernel | virtual |
| ~CSGObject() | CSGObject | virtual |
| ~CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | virtual |
