SVRLight.cpp

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00001 /*
00002  * This program is free software; you can redistribute it and/or modify
00003  * it under the terms of the GNU General Public License as published by
00004  * the Free Software Foundation; either version 3 of the License, or
00005  * (at your option) any later version.
00006  *
00007  * Written (W) 1999-2009 Soeren Sonnenburg
00008  * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
00009  */
00010 
00011 #include "lib/config.h"
00012 
00013 #ifdef USE_SVMLIGHT
00014 
00015 #include "lib/io.h"
00016 #include "lib/lapack.h"
00017 #include "lib/Signal.h"
00018 #include "lib/Mathematics.h"
00019 #include "regression/svr/SVRLight.h"
00020 #include "classifier/KernelMachine.h"
00021 #include "kernel/CombinedKernel.h"
00022 
00023 #include <unistd.h>
00024 
00025 #ifdef USE_CPLEX
00026 extern "C" {
00027 #include <ilcplex/cplex.h>
00028 }
00029 #endif
00030 
00031 #include "base/Parallel.h"
00032 
00033 #ifndef WIN32
00034 #include <pthread.h>
00035 #endif
00036 
00037 using namespace shogun;
00038 
00039 #ifndef DOXYGEN_SHOULD_SKIP_THIS
00040 struct S_THREAD_PARAM
00041 {
00042     float64_t* lin;
00043     int32_t start, end;
00044     int32_t* active2dnum;
00045     int32_t* docs;
00046     CKernel* kernel;
00047     int32_t num_vectors;
00048 };
00049 #endif // DOXYGEN_SHOULD_SKIP_THIS
00050 
00051 CSVRLight::CSVRLight(float64_t C, float64_t eps, CKernel* k, CLabels* lab)
00052 : CSVMLight(C, k, lab)
00053 {
00054     set_tube_epsilon(eps);
00055 }
00056 
00057 CSVRLight::CSVRLight()
00058 : CSVMLight()
00059 {
00060 }
00061 
00062 bool CSVRLight::train(CFeatures* data)
00063 {
00064     //certain setup params
00065     verbosity=1;
00066     init_margin=0.15;
00067     init_iter=500;
00068     precision_violations=0;
00069     opt_precision=DEF_PRECISION;
00070 
00071     strcpy (learn_parm->predfile, "");
00072     learn_parm->biased_hyperplane=1;
00073     learn_parm->sharedslack=0;
00074     learn_parm->remove_inconsistent=0;
00075     learn_parm->skip_final_opt_check=1;
00076     learn_parm->svm_maxqpsize=get_qpsize();
00077     learn_parm->svm_newvarsinqp=learn_parm->svm_maxqpsize-1;
00078     learn_parm->maxiter=100000;
00079     learn_parm->svm_iter_to_shrink=100;
00080     learn_parm->svm_c=get_C1();
00081     learn_parm->transduction_posratio=0.33;
00082     learn_parm->svm_costratio=get_C2()/get_C1();
00083     learn_parm->svm_costratio_unlab=1.0;
00084     learn_parm->svm_unlabbound=1E-5;
00085     learn_parm->epsilon_crit=epsilon; // GU: better decrease it ... ??
00086     learn_parm->epsilon_a=1E-15;
00087     learn_parm->compute_loo=0;
00088     learn_parm->rho=1.0;
00089     learn_parm->xa_depth=0;
00090 
00091     if (!kernel)
00092     {
00093         SG_ERROR( "SVR_light can not proceed without kernel!\n");
00094         return false ;
00095     }
00096 
00097     if (!labels)
00098     {
00099         SG_ERROR( "SVR_light can not proceed without labels!\n");
00100         return false;
00101     }
00102 
00103     if (data)
00104     {
00105         if (labels->get_num_labels() != data->get_num_vectors())
00106             SG_ERROR("Number of training vectors does not match number of labels\n");
00107         kernel->init(data, data);
00108     }
00109 
00110     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00111         kernel->clear_normal();
00112 
00113     // output some info
00114     SG_DEBUG( "qpsize = %i\n", learn_parm->svm_maxqpsize) ;
00115     SG_DEBUG( "epsilon = %1.1e\n", learn_parm->epsilon_crit) ;
00116     SG_DEBUG( "kernel->has_property(KP_LINADD) = %i\n", kernel->has_property(KP_LINADD)) ;
00117     SG_DEBUG( "kernel->has_property(KP_KERNCOMBINATION) = %i\n", kernel->has_property(KP_KERNCOMBINATION)) ;
00118     SG_DEBUG( "get_linadd_enabled() = %i\n", get_linadd_enabled()) ;
00119     SG_DEBUG( "kernel->get_num_subkernels() = %i\n", kernel->get_num_subkernels()) ;
00120 
00121     use_kernel_cache = !((kernel->get_kernel_type() == K_CUSTOM) ||
00122                          (get_linadd_enabled() && kernel->has_property(KP_LINADD)));
00123 
00124     SG_DEBUG( "use_kernel_cache = %i\n", use_kernel_cache) ;
00125 
00126     // train the svm
00127     svr_learn();
00128 
00129     // brain damaged svm light work around
00130     create_new_model(model->sv_num-1);
00131     set_bias(-model->b);
00132     for (int32_t i=0; i<model->sv_num-1; i++)
00133     {
00134         set_alpha(i, model->alpha[i+1]);
00135         set_support_vector(i, model->supvec[i+1]);
00136     }
00137 
00138     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00139         kernel->clear_normal() ;
00140 
00141     return true ;
00142 }
00143 
00144 void CSVRLight::svr_learn()
00145 {
00146     int32_t *inconsistent, i, j;
00147     int32_t inconsistentnum;
00148     int32_t upsupvecnum;
00149     float64_t maxdiff, *lin, *c, *a;
00150     int32_t runtime_start,runtime_end;
00151     int32_t iterations;
00152     float64_t *xi_fullset; /* buffer for storing xi on full sample in loo */
00153     float64_t *a_fullset;  /* buffer for storing alpha on full sample in loo */
00154     TIMING timing_profile;
00155     SHRINK_STATE shrink_state;
00156     int32_t* label;
00157     int32_t* docs;
00158 
00159     ASSERT(labels);
00160     int32_t totdoc=labels->get_num_labels();
00161     num_vectors=totdoc;
00162 
00163     // set up regression problem in standard form
00164     docs=new int32_t[2*totdoc];
00165     label=new int32_t[2*totdoc];
00166     c = new float64_t[2*totdoc];
00167 
00168   for(i=0;i<totdoc;i++) {
00169       docs[i]=i;
00170       j=2*totdoc-1-i;
00171       label[i]=+1;
00172       c[i]=labels->get_label(i);
00173       docs[j]=j;
00174       label[j]=-1;
00175       c[j]=labels->get_label(i);
00176   }
00177   totdoc*=2;
00178 
00179   //prepare kernel cache for regression (i.e. cachelines are twice of current size)
00180   kernel->resize_kernel_cache( kernel->get_cache_size(), true);
00181 
00182   if (kernel->get_kernel_type() == K_COMBINED)
00183   {
00184       CCombinedKernel* k      = (CCombinedKernel*) kernel;
00185       CKernel* kn = k->get_first_kernel();
00186 
00187       while (kn)
00188       {
00189           kn->resize_kernel_cache( kernel->get_cache_size(), true);
00190           SG_UNREF(kn);
00191           kn = k->get_next_kernel();
00192       }
00193   }
00194 
00195   runtime_start=get_runtime();
00196   timing_profile.time_kernel=0;
00197   timing_profile.time_opti=0;
00198   timing_profile.time_shrink=0;
00199   timing_profile.time_update=0;
00200   timing_profile.time_model=0;
00201   timing_profile.time_check=0;
00202   timing_profile.time_select=0;
00203 
00204     delete[] W;
00205     W=NULL;
00206 
00207     if (kernel->has_property(KP_KERNCOMBINATION) && callback)
00208     {
00209         W = new float64_t[totdoc*kernel->get_num_subkernels()];
00210         for (i=0; i<totdoc*kernel->get_num_subkernels(); i++)
00211             W[i]=0;
00212     }
00213 
00214     /* make sure -n value is reasonable */
00215     if((learn_parm->svm_newvarsinqp < 2)
00216             || (learn_parm->svm_newvarsinqp > learn_parm->svm_maxqpsize)) {
00217         learn_parm->svm_newvarsinqp=learn_parm->svm_maxqpsize;
00218     }
00219 
00220     init_shrink_state(&shrink_state,totdoc,(int32_t)MAXSHRINK);
00221 
00222     inconsistent = new int32_t[totdoc];
00223     a = new float64_t[totdoc];
00224     a_fullset = new float64_t[totdoc];
00225     xi_fullset = new float64_t[totdoc];
00226     lin = new float64_t[totdoc];
00227     learn_parm->svm_cost = new float64_t[totdoc];
00228     if (m_linear_term_len > 0)
00229         learn_parm->eps=get_linear_term_array();
00230     else
00231     {
00232         learn_parm->eps=new float64_t[totdoc];      /* equivalent regression epsilon for classification */
00233         CMath::fill_vector(learn_parm->eps, totdoc, tube_epsilon);
00234     }
00235 
00236     delete[] model->supvec;
00237     delete[] model->alpha;
00238     delete[] model->index;
00239     model->supvec = new int32_t[totdoc+2];
00240     model->alpha = new float64_t[totdoc+2];
00241     model->index = new int32_t[totdoc+2];
00242 
00243     model->at_upper_bound=0;
00244     model->b=0;
00245     model->supvec[0]=0;  /* element 0 reserved and empty for now */
00246     model->alpha[0]=0;
00247     model->totdoc=totdoc;
00248 
00249     model->kernel=kernel;
00250 
00251     model->sv_num=1;
00252     model->loo_error=-1;
00253     model->loo_recall=-1;
00254     model->loo_precision=-1;
00255     model->xa_error=-1;
00256     model->xa_recall=-1;
00257     model->xa_precision=-1;
00258     inconsistentnum=0;
00259 
00260   for(i=0;i<totdoc;i++) {    /* various inits */
00261     inconsistent[i]=0;
00262     a[i]=0;
00263     lin[i]=0;
00264 
00265         if(label[i] > 0) {
00266             learn_parm->svm_cost[i]=learn_parm->svm_c*learn_parm->svm_costratio*
00267                 fabs((float64_t)label[i]);
00268         }
00269         else if(label[i] < 0) {
00270             learn_parm->svm_cost[i]=learn_parm->svm_c*fabs((float64_t)label[i]);
00271         }
00272         else
00273             ASSERT(false);
00274     }
00275 
00276     if(verbosity==1) {
00277         SG_DEBUG( "Optimizing...\n");
00278     }
00279 
00280     /* train the svm */
00281         SG_DEBUG( "num_train: %d\n", totdoc);
00282   iterations=optimize_to_convergence(docs,label,totdoc,
00283                      &shrink_state,inconsistent,a,lin,
00284                      c,&timing_profile,
00285                      &maxdiff,(int32_t)-1,
00286                      (int32_t)1);
00287 
00288 
00289     if(verbosity>=1) {
00290         SG_DONE();
00291         SG_INFO("(%ld iterations)\n",iterations);
00292         SG_INFO( "Optimization finished (maxdiff=%.8f).\n",maxdiff);
00293         SG_INFO( "obj = %.16f, rho = %.16f\n",get_objective(),model->b);
00294 
00295         runtime_end=get_runtime();
00296         upsupvecnum=0;
00297 
00298         SG_DEBUG( "num sv: %d\n", model->sv_num);
00299         for(i=1;i<model->sv_num;i++)
00300         {
00301             if(fabs(model->alpha[i]) >=
00302                     (learn_parm->svm_cost[model->supvec[i]]-
00303                      learn_parm->epsilon_a))
00304                 upsupvecnum++;
00305         }
00306         SG_INFO( "Number of SV: %ld (including %ld at upper bound)\n",
00307                 model->sv_num-1,upsupvecnum);
00308     }
00309 
00310   /* this makes sure the model we return does not contain pointers to the
00311      temporary documents */
00312   for(i=1;i<model->sv_num;i++) {
00313     j=model->supvec[i];
00314     if(j >= (totdoc/2)) {
00315       j=totdoc-j-1;
00316     }
00317     model->supvec[i]=j;
00318   }
00319 
00320   shrink_state_cleanup(&shrink_state);
00321     delete[] label;
00322     delete[] inconsistent;
00323     delete[] c;
00324     delete[] a;
00325     delete[] a_fullset;
00326     delete[] xi_fullset;
00327     delete[] lin;
00328     delete[] learn_parm->svm_cost;
00329     delete[] docs;
00330 }
00331 
00332 float64_t CSVRLight::compute_objective_function(
00333     float64_t *a, float64_t *lin, float64_t *c, float64_t* eps, int32_t *label,
00334     int32_t totdoc)
00335 {
00336   /* calculate value of objective function */
00337   float64_t criterion=0;
00338 
00339   for(int32_t i=0;i<totdoc;i++)
00340       criterion+=(eps[i]-(float64_t)label[i]*c[i])*a[i]+0.5*a[i]*label[i]*lin[i];
00341 
00342   /* float64_t check=0;
00343   for(int32_t i=0;i<totdoc;i++)
00344   {
00345       check+=a[i]*eps-a[i]*label[i]*c[i];
00346       for(int32_t j=0;j<totdoc;j++)
00347           check+= 0.5*a[i]*label[i]*a[j]*label[j]*compute_kernel(i,j);
00348 
00349   }
00350 
00351   SG_INFO("REGRESSION OBJECTIVE %f vs. CHECK %f (diff %f)\n", criterion, check, criterion-check); */
00352 
00353   return(criterion);
00354 }
00355 
00356 void* CSVRLight::update_linear_component_linadd_helper(void *params_)
00357 {
00358     S_THREAD_PARAM * params = (S_THREAD_PARAM*) params_ ;
00359 
00360     int32_t jj=0, j=0 ;
00361 
00362     for(jj=params->start;(jj<params->end) && (j=params->active2dnum[jj])>=0;jj++)
00363         params->lin[j]+=params->kernel->compute_optimized(CSVRLight::regression_fix_index2(params->docs[j], params->num_vectors));
00364 
00365     return NULL ;
00366 }
00367 
00368 
00369 void CSVRLight::update_linear_component(
00370     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00371     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00372     float64_t *aicache, float64_t* c)
00373      /* keep track of the linear component */
00374      /* lin of the gradient etc. by updating */
00375      /* based on the change of the variables */
00376      /* in the current working set */
00377 {
00378     register int32_t i=0,ii=0,j=0,jj=0;
00379 
00380     if (kernel->has_property(KP_LINADD) && get_linadd_enabled())
00381     {
00382         if (callback)
00383         {
00384             update_linear_component_mkl_linadd(docs, label, active2dnum, a, a_old, working2dnum,
00385                                                totdoc,  lin, aicache, c) ;
00386         }
00387         else
00388         {
00389             kernel->clear_normal();
00390 
00391             int32_t num_working=0;
00392             for(ii=0;(i=working2dnum[ii])>=0;ii++) {
00393                 if(a[i] != a_old[i]) {
00394                     kernel->add_to_normal(regression_fix_index(docs[i]), (a[i]-a_old[i])*(float64_t)label[i]);
00395                     num_working++;
00396                 }
00397             }
00398 
00399             if (num_working>0)
00400             {
00401                 if (parallel->get_num_threads() < 2)
00402                 {
00403                     for(jj=0;(j=active2dnum[jj])>=0;jj++) {
00404                         lin[j]+=kernel->compute_optimized(regression_fix_index(docs[j]));
00405                     }
00406                 }
00407 #ifndef WIN32
00408                 else
00409                 {
00410                     int32_t num_elem = 0 ;
00411                     for(jj=0;(j=active2dnum[jj])>=0;jj++) num_elem++ ;
00412 
00413                     pthread_t* threads = new pthread_t[parallel->get_num_threads()-1] ;
00414                     S_THREAD_PARAM* params = new S_THREAD_PARAM[parallel->get_num_threads()-1] ;
00415                     int32_t start = 0 ;
00416                     int32_t step = num_elem/parallel->get_num_threads() ;
00417                     int32_t end = step ;
00418 
00419                     for (int32_t t=0; t<parallel->get_num_threads()-1; t++)
00420                     {
00421                         params[t].kernel = kernel ;
00422                         params[t].lin = lin ;
00423                         params[t].docs = docs ;
00424                         params[t].active2dnum=active2dnum ;
00425                         params[t].start = start ;
00426                         params[t].end = end ;
00427                         params[t].num_vectors=num_vectors ;
00428 
00429                         start=end ;
00430                         end+=step ;
00431                         pthread_create(&threads[t], NULL, update_linear_component_linadd_helper, (void*)&params[t]) ;
00432                     }
00433 
00434                     for(jj=params[parallel->get_num_threads()-2].end;(j=active2dnum[jj])>=0;jj++) {
00435                         lin[j]+=kernel->compute_optimized(regression_fix_index(docs[j]));
00436                     }
00437                     void* ret;
00438                     for (int32_t t=0; t<parallel->get_num_threads()-1; t++)
00439                         pthread_join(threads[t], &ret) ;
00440 
00441                     delete[] params;
00442                     delete[] threads;
00443                 }
00444 #endif
00445             }
00446         }
00447     }
00448     else
00449     {
00450         if (callback)
00451         {
00452             update_linear_component_mkl(docs, label, active2dnum,
00453                     a, a_old, working2dnum, totdoc, lin, aicache, c) ;
00454         }
00455         else {
00456             for(jj=0;(i=working2dnum[jj])>=0;jj++) {
00457                 if(a[i] != a_old[i]) {
00458                     kernel->get_kernel_row(i,active2dnum,aicache);
00459                     for(ii=0;(j=active2dnum[ii])>=0;ii++)
00460                         lin[j]+=(a[i]-a_old[i])*aicache[j]*(float64_t)label[i];
00461                 }
00462             }
00463         }
00464     }
00465 }
00466 
00467 void CSVRLight::update_linear_component_mkl(
00468     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00469     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00470     float64_t *aicache, float64_t* c)
00471 {
00472     int32_t num         = totdoc;
00473     int32_t num_weights = -1;
00474     int32_t num_kernels = kernel->get_num_subkernels() ;
00475     const float64_t* old_beta  = kernel->get_subkernel_weights(num_weights);
00476 
00477     ASSERT(num_weights==num_kernels);
00478 
00479     if ((kernel->get_kernel_type()==K_COMBINED) &&
00480              (!((CCombinedKernel*)kernel)->get_append_subkernel_weights()))// for combined kernel
00481     {
00482         CCombinedKernel* k      = (CCombinedKernel*) kernel;
00483         CKernel* kn = k->get_first_kernel() ;
00484         int32_t n = 0, i, j ;
00485 
00486         while (kn!=NULL)
00487         {
00488             for(i=0;i<num;i++)
00489             {
00490                 if(a[i] != a_old[i])
00491                 {
00492                     kn->get_kernel_row(i,NULL,aicache, true);
00493                     for(j=0;j<num;j++)
00494                         W[j*num_kernels+n]+=(a[i]-a_old[i])*aicache[regression_fix_index(j)]*(float64_t)label[i];
00495                 }
00496             }
00497             SG_UNREF(kn);
00498             kn = k->get_next_kernel();
00499             n++ ;
00500         }
00501     }
00502     else // hope the kernel is fast ...
00503     {
00504         float64_t* w_backup = new float64_t[num_kernels] ;
00505         float64_t* w1 = new float64_t[num_kernels] ;
00506 
00507         // backup and set to zero
00508         for (int32_t i=0; i<num_kernels; i++)
00509         {
00510             w_backup[i] = old_beta[i] ;
00511             w1[i]=0.0 ;
00512         }
00513         for (int32_t n=0; n<num_kernels; n++)
00514         {
00515             w1[n]=1.0 ;
00516             kernel->set_subkernel_weights(w1, num_weights) ;
00517 
00518             for(int32_t i=0;i<num;i++)
00519             {
00520                 if(a[i] != a_old[i])
00521                 {
00522                     for(int32_t j=0;j<num;j++)
00523                         W[j*num_kernels+n]+=(a[i]-a_old[i])*compute_kernel(i,j)*(float64_t)label[i];
00524                 }
00525             }
00526             w1[n]=0.0 ;
00527         }
00528 
00529         // restore old weights
00530         kernel->set_subkernel_weights(w_backup,num_weights) ;
00531 
00532         delete[] w_backup ;
00533         delete[] w1 ;
00534     }
00535 
00536     call_mkl_callback(a, label, lin, c, totdoc);
00537 }
00538 
00539 
00540 void CSVRLight::update_linear_component_mkl_linadd(
00541     int32_t* docs, int32_t* label, int32_t *active2dnum, float64_t *a,
00542     float64_t *a_old, int32_t *working2dnum, int32_t totdoc, float64_t *lin,
00543     float64_t *aicache, float64_t* c)
00544 {
00545     // kernel with LP_LINADD property is assumed to have
00546     // compute_by_subkernel functions
00547     int32_t num         = totdoc;
00548     int32_t num_weights = -1;
00549     int32_t num_kernels = kernel->get_num_subkernels() ;
00550     const float64_t* old_beta   = kernel->get_subkernel_weights(num_weights);
00551 
00552     ASSERT(num_weights==num_kernels);
00553 
00554     float64_t* w_backup=new float64_t[num_kernels];
00555     float64_t* w1=new float64_t[num_kernels];
00556 
00557     // backup and set to one
00558     for (int32_t i=0; i<num_kernels; i++)
00559     {
00560         w_backup[i] = old_beta[i] ;
00561         w1[i]=1.0 ;
00562     }
00563     // set the kernel weights
00564     kernel->set_subkernel_weights(w1, num_weights) ;
00565 
00566     // create normal update (with changed alphas only)
00567     kernel->clear_normal();
00568     for(int32_t ii=0, i=0;(i=working2dnum[ii])>=0;ii++) {
00569         if(a[i] != a_old[i]) {
00570             kernel->add_to_normal(regression_fix_index(docs[i]), (a[i]-a_old[i])*(float64_t)label[i]);
00571         }
00572     }
00573 
00574     // determine contributions of different kernels
00575     for (int32_t i=0; i<num; i++)
00576         kernel->compute_by_subkernel(i,&W[i*num_kernels]) ;
00577 
00578     // restore old weights
00579     kernel->set_subkernel_weights(w_backup,num_weights) ;
00580 
00581     delete[] w_backup ;
00582     delete[] w1 ;
00583 
00584     call_mkl_callback(a, label, lin, c, totdoc);
00585 }
00586 
00587 void CSVRLight::call_mkl_callback(float64_t* a, int32_t* label, float64_t* lin, float64_t* c, int32_t totdoc)
00588 {
00589     int32_t num = totdoc;
00590     int32_t num_kernels = kernel->get_num_subkernels() ;
00591     int nk = (int) num_kernels; // calling external lib
00592     float64_t sumalpha = 0;
00593     float64_t* sumw=new float64_t[num_kernels];
00594 
00595     for (int32_t i=0; i<num; i++)
00596         sumalpha-=a[i]*(learn_parm->eps[i]-label[i]*c[i]);
00597 
00598 #ifdef HAVE_LAPACK
00599     double* alphay  = new double[num];
00600     for (int32_t i=0; i<num; i++)
00601         alphay[i]=a[i]*label[i];
00602 
00603     for (int32_t i=0; i<num_kernels; i++)
00604         sumw[i]=0;
00605 
00606     cblas_dgemv(CblasColMajor, CblasNoTrans, nk, (int) num, 0.5, (double*) W,
00607         nk, (double*) alphay, 1, 1.0, (double*) sumw, 1);
00608 
00609     delete[] alphay;
00610 #else
00611     for (int32_t d=0; d<num_kernels; d++)
00612     {
00613         sumw[d]=0;
00614         for(int32_t i=0; i<num; i++)
00615             sumw[d] += 0.5*a[i]*label[i]*W[i*num_kernels+d];
00616     }
00617 #endif
00618 
00619     if (callback)
00620         mkl_converged=callback(mkl, sumw, sumalpha);
00621 
00622     const float64_t* new_beta   = kernel->get_subkernel_weights(num_kernels);
00623 
00624     // update lin
00625 #ifdef HAVE_LAPACK
00626     cblas_dgemv(CblasColMajor, CblasTrans, nk, (int) num, 1.0, (double*) W,
00627         nk, (double*) new_beta, 1, 0.0, (double*) lin, 1);
00628 #else
00629     for(int32_t i=0; i<num; i++)
00630         lin[i]=0 ;
00631     for (int32_t d=0; d<num_kernels; d++)
00632         if (new_beta[d]!=0)
00633             for(int32_t i=0; i<num; i++)
00634                 lin[i] += new_beta[d]*W[i*num_kernels+d] ;
00635 #endif
00636 
00637 
00638     delete[] sumw;
00639 }
00640 
00641 
00642 void CSVRLight::reactivate_inactive_examples(
00643     int32_t* label, float64_t *a, SHRINK_STATE *shrink_state, float64_t *lin,
00644     float64_t *c, int32_t totdoc, int32_t iteration, int32_t *inconsistent,
00645     int32_t* docs, float64_t *aicache, float64_t *maxdiff)
00646      /* Make all variables active again which had been removed by
00647         shrinking. */
00648      /* Computes lin for those variables from scratch. */
00649 {
00650   register int32_t i=0,j,ii=0,jj,t,*changed2dnum,*inactive2dnum;
00651   int32_t *changed,*inactive;
00652   register float64_t *a_old,dist;
00653   float64_t ex_c,target;
00654 
00655   if (kernel->has_property(KP_LINADD) && get_linadd_enabled()) { /* special linear case */
00656       a_old=shrink_state->last_a;
00657 
00658       kernel->clear_normal();
00659       int32_t num_modified=0;
00660       for(i=0;i<totdoc;i++) {
00661           if(a[i] != a_old[i]) {
00662               kernel->add_to_normal(regression_fix_index(docs[i]), ((a[i]-a_old[i])*(float64_t)label[i]));
00663               a_old[i]=a[i];
00664               num_modified++;
00665           }
00666       }
00667 
00668       if (num_modified>0)
00669       {
00670           for(i=0;i<totdoc;i++) {
00671               if(!shrink_state->active[i]) {
00672                   lin[i]=shrink_state->last_lin[i]+kernel->compute_optimized(regression_fix_index(docs[i]));
00673               }
00674               shrink_state->last_lin[i]=lin[i];
00675           }
00676       }
00677   }
00678   else
00679   {
00680       changed=new int32_t[totdoc];
00681       changed2dnum=new int32_t[totdoc+11];
00682       inactive=new int32_t[totdoc];
00683       inactive2dnum=new int32_t[totdoc+11];
00684       for(t=shrink_state->deactnum-1;(t>=0) && shrink_state->a_history[t];t--) {
00685           if(verbosity>=2) {
00686               SG_INFO( "%ld..",t);
00687           }
00688           a_old=shrink_state->a_history[t];
00689           for(i=0;i<totdoc;i++) {
00690               inactive[i]=((!shrink_state->active[i])
00691                       && (shrink_state->inactive_since[i] == t));
00692               changed[i]= (a[i] != a_old[i]);
00693           }
00694           compute_index(inactive,totdoc,inactive2dnum);
00695           compute_index(changed,totdoc,changed2dnum);
00696 
00697           for(ii=0;(i=changed2dnum[ii])>=0;ii++) {
00698               CKernelMachine::kernel->get_kernel_row(i,inactive2dnum,aicache);
00699               for(jj=0;(j=inactive2dnum[jj])>=0;jj++)
00700                   lin[j]+=(a[i]-a_old[i])*aicache[j]*(float64_t)label[i];
00701           }
00702       }
00703       delete[] changed;
00704       delete[] changed2dnum;
00705       delete[] inactive;
00706       delete[] inactive2dnum;
00707   }
00708 
00709   (*maxdiff)=0;
00710   for(i=0;i<totdoc;i++) {
00711     shrink_state->inactive_since[i]=shrink_state->deactnum-1;
00712     if(!inconsistent[i]) {
00713       dist=(lin[i]-model->b)*(float64_t)label[i];
00714       target=-(learn_parm->eps[i]-(float64_t)label[i]*c[i]);
00715       ex_c=learn_parm->svm_cost[i]-learn_parm->epsilon_a;
00716       if((a[i]>learn_parm->epsilon_a) && (dist > target)) {
00717     if((dist-target)>(*maxdiff))  /* largest violation */
00718       (*maxdiff)=dist-target;
00719       }
00720       else if((a[i]<ex_c) && (dist < target)) {
00721     if((target-dist)>(*maxdiff))  /* largest violation */
00722       (*maxdiff)=target-dist;
00723       }
00724       if((a[i]>(0+learn_parm->epsilon_a))
00725      && (a[i]<ex_c)) {
00726     shrink_state->active[i]=1;                         /* not at bound */
00727       }
00728       else if((a[i]<=(0+learn_parm->epsilon_a)) && (dist < (target+learn_parm->epsilon_shrink))) {
00729     shrink_state->active[i]=1;
00730       }
00731       else if((a[i]>=ex_c)
00732           && (dist > (target-learn_parm->epsilon_shrink))) {
00733     shrink_state->active[i]=1;
00734       }
00735       else if(learn_parm->sharedslack) { /* make all active when sharedslack */
00736     shrink_state->active[i]=1;
00737       }
00738     }
00739   }
00740   if (use_kernel_cache) { /* update history for non-linear */
00741       for(i=0;i<totdoc;i++) {
00742           (shrink_state->a_history[shrink_state->deactnum-1])[i]=a[i];
00743       }
00744       for(t=shrink_state->deactnum-2;(t>=0) && shrink_state->a_history[t];t--) {
00745           delete[] shrink_state->a_history[t];
00746           shrink_state->a_history[t]=0;
00747       }
00748   }
00749 }
00750 #endif //USE_SVMLIGHT
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SHOGUN Machine Learning Toolbox - Documentation