LocalAlignmentStringKernel.cpp File Reference

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Macros
#define	LOGP(x, y)   LogSum(x,y)

Functions
static int32_t	BINDEX (int32_t i, int32_t j)

Variables
const int32_t	NAA = 20
const int32_t	NLET = 26
const float64_t	SCALING = 0.1
const float64_t	LOG0 = -10000
const float64_t	INTSCALE = 1000.0

Macro Definition Documentation

#define LOGP	(		x,
			y
	)		LogSum(x,y)

Definition at line 84 of file LocalAlignmentStringKernel.cpp.

Function Documentation

static int32_t BINDEX ( int32_t  i, int32_t  j  )

static

Definition at line 67 of file LocalAlignmentStringKernel.cpp.

Variable Documentation

const float64_t INTSCALE = 1000.0

Definition at line 93 of file LocalAlignmentStringKernel.cpp.

const float64_t LOG0 = -10000

Definition at line 92 of file LocalAlignmentStringKernel.cpp.

const int32_t NAA = 20

Definition at line 35 of file LocalAlignmentStringKernel.cpp.

const int32_t NLET = 26

Definition at line 36 of file LocalAlignmentStringKernel.cpp.

const float64_t SCALING = 0.1

Definition at line 76 of file LocalAlignmentStringKernel.cpp.