The class CombinedFeatures is used to combine a number of of feature objects into a single CombinedFeatures object.
It keeps pointers to the added sub-features and is especially useful to combine kernels working on different domains (c.f. CCombinedKernel) and to combine kernels looking at independent features.
Subsets are supported: All actions will just be given through to all sub-features. Only once per sub-feature instance, i.e. if there are two sub-features that are the same instance, the subset action will only be performed once.
Definition at line 37 of file CombinedFeatures.h.
Public Member Functions | |
CCombinedFeatures () | |
CCombinedFeatures (const CCombinedFeatures &orig) | |
virtual CFeatures * | duplicate () const |
virtual | ~CCombinedFeatures () |
virtual EFeatureType | get_feature_type () const |
virtual EFeatureClass | get_feature_class () const |
virtual int32_t | get_num_vectors () const |
virtual int32_t | get_size () const |
void | list_feature_objs () |
bool | check_feature_obj_compatibility (CCombinedFeatures *comb_feat) |
CFeatures * | get_first_feature_obj () |
CFeatures * | get_first_feature_obj (CListElement *¤t) |
CFeatures * | get_next_feature_obj () |
CFeatures * | get_next_feature_obj (CListElement *¤t) |
CFeatures * | get_last_feature_obj () |
bool | insert_feature_obj (CFeatures *obj) |
bool | append_feature_obj (CFeatures *obj) |
bool | delete_feature_obj () |
int32_t | get_num_feature_obj () |
CFeatures * | create_merged_copy (CFeatures *other) |
virtual void | add_subset (SGVector< index_t > subset) |
virtual void | remove_subset () |
virtual void | remove_all_subsets () |
virtual CFeatures * | copy_subset (SGVector< index_t > indices) |
virtual const char * | get_name () const |
virtual int32_t | add_preprocessor (CPreprocessor *p) |
set preprocessor | |
virtual CPreprocessor * | del_preprocessor (int32_t num) |
del current preprocessor | |
CPreprocessor * | get_preprocessor (int32_t num) const |
get current preprocessor | |
void | set_preprocessed (int32_t num) |
bool | is_preprocessed (int32_t num) const |
int32_t | get_num_preprocessed () const |
get whether specified preprocessor (or all if num=1) was/were already applied | |
int32_t | get_num_preprocessors () const |
void | clean_preprocessors () |
int32_t | get_cache_size () const |
virtual bool | reshape (int32_t num_features, int32_t num_vectors) |
void | list_feature_obj () const |
virtual void | load (CFile *loader) |
virtual void | save (CFile *writer) |
bool | check_feature_compatibility (CFeatures *f) const |
bool | has_property (EFeatureProperty p) const |
void | set_property (EFeatureProperty p) |
void | unset_property (EFeatureProperty p) |
virtual CSubsetStack * | get_subset_stack () |
virtual void | subset_changed_post () |
virtual CSGObject * | shallow_copy () const |
virtual CSGObject * | deep_copy () const |
virtual bool | is_generic (EPrimitiveType *generic) const |
template<class T > | |
void | set_generic () |
void | unset_generic () |
virtual void | print_serializable (const char *prefix="") |
virtual bool | save_serializable (CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER) |
virtual bool | load_serializable (CSerializableFile *file, const char *prefix="", int32_t param_version=VERSION_PARAMETER) |
DynArray< TParameter * > * | load_file_parameters (const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="") |
DynArray< TParameter * > * | load_all_file_parameters (int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="") |
void | map_parameters (DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos) |
void | set_global_io (SGIO *io) |
SGIO * | get_global_io () |
void | set_global_parallel (Parallel *parallel) |
Parallel * | get_global_parallel () |
void | set_global_version (Version *version) |
Version * | get_global_version () |
SGStringList< char > | get_modelsel_names () |
void | print_modsel_params () |
char * | get_modsel_param_descr (const char *param_name) |
index_t | get_modsel_param_index (const char *param_name) |
void | build_parameter_dictionary (CMap< TParameter *, CSGObject * > &dict) |
Public Attributes | |
SGIO * | io |
Parallel * | parallel |
Version * | version |
Parameter * | m_parameters |
Parameter * | m_model_selection_parameters |
ParameterMap * | m_parameter_map |
uint32_t | m_hash |
Protected Member Functions | |
virtual TParameter * | migrate (DynArray< TParameter * > *param_base, const SGParamInfo *target) |
virtual void | one_to_one_migration_prepare (DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL) |
virtual void | load_serializable_pre () throw (ShogunException) |
virtual void | load_serializable_post () throw (ShogunException) |
virtual void | save_serializable_pre () throw (ShogunException) |
virtual void | save_serializable_post () throw (ShogunException) |
virtual bool | update_parameter_hash () |
Protected Attributes | |
CList * | feature_list |
int32_t | num_vec |
CSubsetStack * | m_subset_stack |
default constructor
Definition at line 20 of file CombinedFeatures.cpp.
CCombinedFeatures | ( | const CCombinedFeatures & | orig | ) |
copy constructor
Definition at line 29 of file CombinedFeatures.cpp.
~CCombinedFeatures | ( | ) | [virtual] |
destructor
Definition at line 44 of file CombinedFeatures.cpp.
int32_t add_preprocessor | ( | CPreprocessor * | p | ) | [virtual, inherited] |
set preprocessor
add preprocessor
p | preprocessor to set |
Definition at line 81 of file Features.cpp.
adds a subset of indices on top of the current subsets (possibly subset o subset. Calls subset_changed_post() afterwards. Adds the subset to all sub-features
subset | subset of indices to add |
Reimplemented from CFeatures.
Definition at line 255 of file CombinedFeatures.cpp.
bool append_feature_obj | ( | CFeatures * | obj | ) |
append feature object
obj | feature object to append |
Definition at line 169 of file CombinedFeatures.cpp.
void build_parameter_dictionary | ( | CMap< TParameter *, CSGObject * > & | dict | ) | [inherited] |
Builds a dictionary of all parameters in SGObject as well of those of SGObjects that are parameters of this object. Dictionary maps parameters to the objects that own them.
dict | dictionary of parameters to be built. |
Definition at line 1201 of file SGObject.cpp.
bool check_feature_compatibility | ( | CFeatures * | f | ) | const [inherited] |
check feature compatibility
f | features to check for compatibility |
Definition at line 326 of file Features.cpp.
bool check_feature_obj_compatibility | ( | CCombinedFeatures * | comb_feat | ) |
check feature object compatibility
comb_feat | feature to check for compatibility |
Definition at line 81 of file CombinedFeatures.cpp.
void clean_preprocessors | ( | ) | [inherited] |
clears all preprocs
Definition at line 137 of file Features.cpp.
Creates a new CFeatures instance containing copies of the elements which are specified by the provided indices. Simply creates a combined features instance where all sub-features are the results of their copy_subset calls
indices | indices of feature elements to copy |
Reimplemented from CFeatures.
Definition at line 339 of file CombinedFeatures.cpp.
Takes another feature instance and returns a new instance which is a concatenation of a copy if this instace's data and the given instance's data. Note that the feature types have to be equal.
In this case, all sub features are merged
other | feature object to append |
Reimplemented from CFeatures.
Definition at line 209 of file CombinedFeatures.cpp.
virtual CSGObject* deep_copy | ( | ) | const [virtual, inherited] |
A deep copy. All the instance variables will also be copied.
Definition at line 131 of file SGObject.h.
CPreprocessor * del_preprocessor | ( | int32_t | num | ) | [virtual, inherited] |
del current preprocessor
delete preprocessor from list caller has to clean up returned preproc
num | index of preprocessor in list |
Definition at line 143 of file Features.cpp.
bool delete_feature_obj | ( | ) |
delete feature object
Definition at line 184 of file CombinedFeatures.cpp.
CFeatures * duplicate | ( | ) | const [virtual] |
duplicate feature object
Implements CFeatures.
Definition at line 39 of file CombinedFeatures.cpp.
int32_t get_cache_size | ( | ) | const [inherited] |
virtual EFeatureClass get_feature_class | ( | ) | const [virtual] |
get feature class
Implements CFeatures.
Definition at line 67 of file CombinedFeatures.h.
virtual EFeatureType get_feature_type | ( | ) | const [virtual] |
get feature type
Implements CFeatures.
Definition at line 58 of file CombinedFeatures.h.
CFeatures * get_first_feature_obj | ( | ) |
get first feature object
Definition at line 129 of file CombinedFeatures.cpp.
CFeatures * get_first_feature_obj | ( | CListElement *& | current | ) |
get first feature object
current | list of features |
Definition at line 134 of file CombinedFeatures.cpp.
SGIO * get_global_io | ( | ) | [inherited] |
Parallel * get_global_parallel | ( | ) | [inherited] |
Version * get_global_version | ( | ) | [inherited] |
CFeatures * get_last_feature_obj | ( | ) |
get last feature object
Definition at line 149 of file CombinedFeatures.cpp.
SGStringList< char > get_modelsel_names | ( | ) | [inherited] |
Definition at line 1108 of file SGObject.cpp.
char * get_modsel_param_descr | ( | const char * | param_name | ) | [inherited] |
Returns description of a given parameter string, if it exists. SG_ERROR otherwise
param_name | name of the parameter |
Definition at line 1132 of file SGObject.cpp.
index_t get_modsel_param_index | ( | const char * | param_name | ) | [inherited] |
Returns index of model selection parameter with provided index
param_name | name of model selection parameter |
Definition at line 1145 of file SGObject.cpp.
virtual const char* get_name | ( | ) | const [virtual] |
CFeatures * get_next_feature_obj | ( | ) |
get next feature object
Definition at line 139 of file CombinedFeatures.cpp.
CFeatures * get_next_feature_obj | ( | CListElement *& | current | ) |
get next feature object
current | list of features |
Definition at line 144 of file CombinedFeatures.cpp.
int32_t get_num_feature_obj | ( | ) |
get number of feature objects
Definition at line 196 of file CombinedFeatures.cpp.
int32_t get_num_preprocessed | ( | ) | const [inherited] |
get whether specified preprocessor (or all if num=1) was/were already applied
get the number of applied preprocs
Definition at line 123 of file Features.cpp.
int32_t get_num_preprocessors | ( | ) | const [inherited] |
get number of preprocessors
Definition at line 198 of file Features.cpp.
virtual int32_t get_num_vectors | ( | ) | const [virtual] |
get number of feature vectors
Implements CFeatures.
Definition at line 76 of file CombinedFeatures.h.
CPreprocessor * get_preprocessor | ( | int32_t | num | ) | const [inherited] |
get current preprocessor
get specified preprocessor
num | index of preprocessor in list |
Definition at line 111 of file Features.cpp.
int32_t get_size | ( | ) | const [virtual] |
get memory footprint of one feature
Implements CFeatures.
Definition at line 49 of file CombinedFeatures.cpp.
CSubsetStack * get_subset_stack | ( | ) | [virtual, inherited] |
bool has_property | ( | EFeatureProperty | p | ) | const [inherited] |
check if features have given property
p | feature property |
Definition at line 336 of file Features.cpp.
bool insert_feature_obj | ( | CFeatures * | obj | ) |
insert feature object
obj | feature object to insert |
Definition at line 154 of file CombinedFeatures.cpp.
bool is_generic | ( | EPrimitiveType * | generic | ) | const [virtual, inherited] |
If the SGSerializable is a class template then TRUE will be returned and GENERIC is set to the type of the generic.
generic | set to the type of the generic if returning TRUE |
Definition at line 278 of file SGObject.cpp.
bool is_preprocessed | ( | int32_t | num | ) | const [inherited] |
get whether specified preprocessor was already applied
num | index of preprocessor in list |
Definition at line 193 of file Features.cpp.
void list_feature_obj | ( | ) | const [inherited] |
list feature object
Definition at line 214 of file Features.cpp.
void list_feature_objs | ( | ) |
list feature objects
Definition at line 63 of file CombinedFeatures.cpp.
void load | ( | CFile * | loader | ) | [virtual, inherited] |
load features from file
loader | File object via which data shall be loaded |
Reimplemented in CDenseFeatures< ST >, CSparseFeatures< ST >, CStringFeatures< ST >, CDenseFeatures< uint32_t >, CDenseFeatures< float64_t >, CDenseFeatures< T >, CDenseFeatures< uint16_t >, CSparseFeatures< float64_t >, CSparseFeatures< T >, CStringFeatures< T >, CStringFeatures< uint8_t >, CStringFeatures< char >, and CStringFeatures< uint16_t >.
Definition at line 312 of file Features.cpp.
DynArray< TParameter * > * load_all_file_parameters | ( | int32_t | file_version, | |
int32_t | current_version, | |||
CSerializableFile * | file, | |||
const char * | prefix = "" | |||
) | [inherited] |
maps all parameters of this instance to the provided file version and loads all parameter data from the file into an array, which is sorted (basically calls load_file_parameter(...) for all parameters and puts all results into a sorted array)
file_version | parameter version of the file | |
current_version | version from which mapping begins (you want to use VERSION_PARAMETER for this in most cases) | |
file | file to load from | |
prefix | prefix for members |
Definition at line 679 of file SGObject.cpp.
DynArray< TParameter * > * load_file_parameters | ( | const SGParamInfo * | param_info, | |
int32_t | file_version, | |||
CSerializableFile * | file, | |||
const char * | prefix = "" | |||
) | [inherited] |
loads some specified parameters from a file with a specified version The provided parameter info has a version which is recursively mapped until the file parameter version is reached. Note that there may be possibly multiple parameters in the mapping, therefore, a set of TParameter instances is returned
param_info | information of parameter | |
file_version | parameter version of the file, must be <= provided parameter version | |
file | file to load from | |
prefix | prefix for members |
Definition at line 523 of file SGObject.cpp.
bool load_serializable | ( | CSerializableFile * | file, | |
const char * | prefix = "" , |
|||
int32_t | param_version = VERSION_PARAMETER | |||
) | [virtual, inherited] |
Load this object from file. If it will fail (returning FALSE) then this object will contain inconsistent data and should not be used!
file | where to load from | |
prefix | prefix for members | |
param_version | (optional) a parameter version different to (this is mainly for testing, better do not use) |
Reimplemented in CModelSelectionParameters.
Definition at line 354 of file SGObject.cpp.
void load_serializable_post | ( | ) | throw (ShogunException) [protected, virtual, inherited] |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_POST is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CLinearHMM, CAlphabet, CANOVAKernel, CCircularKernel, CExponentialKernel, CGaussianKernel, CInverseMultiQuadricKernel, CKernel, CWeightedDegreePositionStringKernel, and CList.
Definition at line 1033 of file SGObject.cpp.
void load_serializable_pre | ( | ) | throw (ShogunException) [protected, virtual, inherited] |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_PRE is called.
ShogunException | Will be thrown if an error occurres. |
Definition at line 1028 of file SGObject.cpp.
void map_parameters | ( | DynArray< TParameter * > * | param_base, | |
int32_t & | base_version, | |||
DynArray< const SGParamInfo * > * | target_param_infos | |||
) | [inherited] |
Takes a set of TParameter instances (base) with a certain version and a set of target parameter infos and recursively maps the base level wise to the current version using CSGObject::migrate(...). The base is replaced. After this call, the base version containing parameters should be of same version/type as the initial target parameter infos. Note for this to work, the migrate methods and all the internal parameter mappings have to match
param_base | set of TParameter instances that are mapped to the provided target parameter infos | |
base_version | version of the parameter base | |
target_param_infos | set of SGParamInfo instances that specify the target parameter base |
Definition at line 717 of file SGObject.cpp.
TParameter * migrate | ( | DynArray< TParameter * > * | param_base, | |
const SGParamInfo * | target | |||
) | [protected, virtual, inherited] |
creates a new TParameter instance, which contains migrated data from the version that is provided. The provided parameter data base is used for migration, this base is a collection of all parameter data of the previous version. Migration is done FROM the data in param_base TO the provided param info Migration is always one version step. Method has to be implemented in subclasses, if no match is found, base method has to be called.
If there is an element in the param_base which equals the target, a copy of the element is returned. This represents the case when nothing has changed and therefore, the migrate method is not overloaded in a subclass
param_base | set of TParameter instances to use for migration | |
target | parameter info for the resulting TParameter |
Definition at line 923 of file SGObject.cpp.
void one_to_one_migration_prepare | ( | DynArray< TParameter * > * | param_base, | |
const SGParamInfo * | target, | |||
TParameter *& | replacement, | |||
TParameter *& | to_migrate, | |||
char * | old_name = NULL | |||
) | [protected, virtual, inherited] |
This method prepares everything for a one-to-one parameter migration. One to one here means that only ONE element of the parameter base is needed for the migration (the one with the same name as the target). Data is allocated for the target (in the type as provided in the target SGParamInfo), and a corresponding new TParameter instance is written to replacement. The to_migrate pointer points to the single needed TParameter instance needed for migration. If a name change happened, the old name may be specified by old_name. In addition, the m_delete_data flag of to_migrate is set to true. So if you want to migrate data, the only thing to do after this call is converting the data in the m_parameter fields. If unsure how to use - have a look into an example for this. (base_migration_type_conversion.cpp for example)
param_base | set of TParameter instances to use for migration | |
target | parameter info for the resulting TParameter | |
replacement | (used as output) here the TParameter instance which is returned by migration is created into | |
to_migrate | the only source that is used for migration | |
old_name | with this parameter, a name change may be specified |
Definition at line 864 of file SGObject.cpp.
void print_modsel_params | ( | ) | [inherited] |
prints all parameter registered for model selection and their type
Definition at line 1084 of file SGObject.cpp.
void print_serializable | ( | const char * | prefix = "" |
) | [virtual, inherited] |
prints registered parameters out
prefix | prefix for members |
Definition at line 290 of file SGObject.cpp.
void remove_all_subsets | ( | ) | [virtual] |
removes all subsets Calls subset_changed_post() afterwards
Removes all subsets of all sub-features
Reimplemented from CFeatures.
Definition at line 311 of file CombinedFeatures.cpp.
void remove_subset | ( | ) | [virtual] |
removes that last added subset from subset stack, if existing Calls subset_changed_post() afterwards
Removes the subset from all sub-features
Reimplemented from CFeatures.
Definition at line 283 of file CombinedFeatures.cpp.
bool reshape | ( | int32_t | num_features, | |
int32_t | num_vectors | |||
) | [virtual, inherited] |
in case there is a feature matrix allow for reshaping
NOT IMPLEMENTED!
num_features | new number of features | |
num_vectors | new number of vectors |
Reimplemented in CDenseFeatures< ST >, CDenseFeatures< uint32_t >, CDenseFeatures< float64_t >, CDenseFeatures< T >, and CDenseFeatures< uint16_t >.
Definition at line 208 of file Features.cpp.
void save | ( | CFile * | writer | ) | [virtual, inherited] |
save features to file
writer | File object via which data shall be saved |
Reimplemented in CDenseFeatures< ST >, CSparseFeatures< ST >, CStringFeatures< ST >, CDenseFeatures< uint32_t >, CDenseFeatures< float64_t >, CDenseFeatures< T >, CDenseFeatures< uint16_t >, CSparseFeatures< float64_t >, CSparseFeatures< T >, CStringFeatures< T >, CStringFeatures< uint8_t >, CStringFeatures< char >, and CStringFeatures< uint16_t >.
Definition at line 319 of file Features.cpp.
bool save_serializable | ( | CSerializableFile * | file, | |
const char * | prefix = "" , |
|||
int32_t | param_version = VERSION_PARAMETER | |||
) | [virtual, inherited] |
Save this object to file.
file | where to save the object; will be closed during returning if PREFIX is an empty string. | |
prefix | prefix for members | |
param_version | (optional) a parameter version different to (this is mainly for testing, better do not use) |
Reimplemented in CModelSelectionParameters.
Definition at line 296 of file SGObject.cpp.
void save_serializable_post | ( | ) | throw (ShogunException) [protected, virtual, inherited] |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_POST is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CKernel.
Definition at line 1043 of file SGObject.cpp.
void save_serializable_pre | ( | ) | throw (ShogunException) [protected, virtual, inherited] |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_PRE is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CKernel.
Definition at line 1038 of file SGObject.cpp.
void set_generic< floatmax_t > | ( | ) | [inherited] |
set generic type to T
void set_global_io | ( | SGIO * | io | ) | [inherited] |
void set_global_parallel | ( | Parallel * | parallel | ) | [inherited] |
set the parallel object
parallel | parallel object to use |
Definition at line 230 of file SGObject.cpp.
void set_global_version | ( | Version * | version | ) | [inherited] |
set the version object
version | version object to use |
Definition at line 265 of file SGObject.cpp.
void set_preprocessed | ( | int32_t | num | ) | [inherited] |
set applied flag for preprocessor
num | index of preprocessor in list |
Definition at line 188 of file Features.cpp.
void set_property | ( | EFeatureProperty | p | ) | [inherited] |
virtual CSGObject* shallow_copy | ( | ) | const [virtual, inherited] |
A shallow copy. All the SGObject instance variables will be simply assigned and SG_REF-ed.
Reimplemented in CGaussianKernel.
Definition at line 122 of file SGObject.h.
virtual void subset_changed_post | ( | ) | [virtual, inherited] |
method may be overwritten to update things that depend on subset
Reimplemented in CStringFeatures< ST >, CStringFeatures< T >, CStringFeatures< uint8_t >, CStringFeatures< char >, and CStringFeatures< uint16_t >.
Definition at line 262 of file Features.h.
void unset_generic | ( | ) | [inherited] |
unset generic type
this has to be called in classes specializing a template class
Definition at line 285 of file SGObject.cpp.
void unset_property | ( | EFeatureProperty | p | ) | [inherited] |
bool update_parameter_hash | ( | ) | [protected, virtual, inherited] |
Updates the hash of current parameter combination.
Definition at line 237 of file SGObject.cpp.
CList* feature_list [protected] |
feature list
Definition at line 208 of file CombinedFeatures.h.
io
Definition at line 462 of file SGObject.h.
uint32_t m_hash [inherited] |
Hash of parameter values
Definition at line 480 of file SGObject.h.
Parameter* m_model_selection_parameters [inherited] |
model selection parameters
Definition at line 474 of file SGObject.h.
ParameterMap* m_parameter_map [inherited] |
map for different parameter versions
Definition at line 477 of file SGObject.h.
Parameter* m_parameters [inherited] |
parameters
Definition at line 471 of file SGObject.h.
CSubsetStack* m_subset_stack [protected, inherited] |
subset used for index transformations
Definition at line 296 of file Features.h.
int32_t num_vec [protected] |
number of vectors must match between sub features
Definition at line 213 of file CombinedFeatures.h.
parallel
Definition at line 465 of file SGObject.h.
version
Definition at line 468 of file SGObject.h.