SHOGUN
v3.0.0
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This class can be used to convert a document collection contained in a CStringFeatures<char> object where each document is stored as a single vector into a hashed Bag-of-Words representation. Like in the standard Bag-of-Words representation, this class considers each document as a collection of tokens, which are then hashed into a new feature space of a specified dimension. This class is very flexible and allows the user to specify the tokenizer used to tokenize each document, specify whether the results should be normalized with regards to the sqrt of the document size, as well as to specify whether he wants to combine different tokens. The latter implements a k-skip n-grams approach, meaning that you can combine up to n tokens, while skipping up to k. Eg. for the tokens ["a", "b", "c", "d"], with n_grams = 2 and skips = 2, one would get the following combinations : ["a", "ab", "ac" (skipped 1), "ad" (skipped 2), "b", "bc", "bd" (skipped 1), "c", "cd", "d"].
Definition at line 37 of file HashedDocConverter.h.
Public Member Functions | |
CHashedDocConverter () | |
CHashedDocConverter (int32_t hash_bits, bool normalize=false, int32_t n_grams=1, int32_t skips=0) | |
CHashedDocConverter (CTokenizer *tzer, int32_t hash_bits, bool normalize=false, int32_t n_grams=1, int32_t skips=0) | |
virtual | ~CHashedDocConverter () |
virtual CFeatures * | apply (CFeatures *features) |
SGSparseVector< float64_t > | apply (SGVector< char > document) |
virtual const char * | get_name () const |
void | set_normalization (bool normalize) |
void | set_k_skip_n_grams (int32_t k, int32_t n) |
virtual CSGObject * | shallow_copy () const |
virtual CSGObject * | deep_copy () const |
virtual bool | is_generic (EPrimitiveType *generic) const |
template<class T > | |
void | set_generic () |
void | unset_generic () |
virtual void | print_serializable (const char *prefix="") |
virtual bool | save_serializable (CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter()) |
virtual bool | load_serializable (CSerializableFile *file, const char *prefix="", int32_t param_version=Version::get_version_parameter()) |
DynArray< TParameter * > * | load_file_parameters (const SGParamInfo *param_info, int32_t file_version, CSerializableFile *file, const char *prefix="") |
DynArray< TParameter * > * | load_all_file_parameters (int32_t file_version, int32_t current_version, CSerializableFile *file, const char *prefix="") |
void | map_parameters (DynArray< TParameter * > *param_base, int32_t &base_version, DynArray< const SGParamInfo * > *target_param_infos) |
void | set_global_io (SGIO *io) |
SGIO * | get_global_io () |
void | set_global_parallel (Parallel *parallel) |
Parallel * | get_global_parallel () |
void | set_global_version (Version *version) |
Version * | get_global_version () |
SGStringList< char > | get_modelsel_names () |
void | print_modsel_params () |
char * | get_modsel_param_descr (const char *param_name) |
index_t | get_modsel_param_index (const char *param_name) |
void | build_gradient_parameter_dictionary (CMap< TParameter *, CSGObject * > *dict) |
virtual bool | update_parameter_hash () |
virtual bool | equals (CSGObject *other, float64_t accuracy=0.0) |
virtual CSGObject * | clone () |
Static Public Member Functions | |
static void | generate_ngram_hashes (CDynamicArray< uint32_t > *hashes, CDynamicArray< index_t > *ngram_hashes, int32_t num_bits, int32_t ngrams, int32_t tokens_to_skip) |
Public Attributes | |
SGIO * | io |
Parallel * | parallel |
Version * | version |
Parameter * | m_parameters |
Parameter * | m_model_selection_parameters |
Parameter * | m_gradient_parameters |
ParameterMap * | m_parameter_map |
uint32_t | m_hash |
Protected Member Functions | |
void | init (CTokenizer *tzer, int32_t d, bool normalize, int32_t n_grams, int32_t skips) |
int32_t | count_distinct_indices (CDynamicArray< uint32_t > &hashed_indices) |
SGSparseVector< float64_t > | create_hashed_representation (CDynamicArray< uint32_t > &hashed_indices) |
virtual TParameter * | migrate (DynArray< TParameter * > *param_base, const SGParamInfo *target) |
virtual void | one_to_one_migration_prepare (DynArray< TParameter * > *param_base, const SGParamInfo *target, TParameter *&replacement, TParameter *&to_migrate, char *old_name=NULL) |
virtual void | load_serializable_pre () throw (ShogunException) |
virtual void | load_serializable_post () throw (ShogunException) |
virtual void | save_serializable_pre () throw (ShogunException) |
virtual void | save_serializable_post () throw (ShogunException) |
Protected Attributes | |
int32_t | num_bits |
CTokenizer * | tokenizer |
bool | should_normalize |
int32_t | ngrams |
int32_t | tokens_to_skip |
Default constructor
Definition at line 24 of file HashedDocConverter.cpp.
CHashedDocConverter | ( | int32_t | hash_bits, |
bool | normalize = false , |
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int32_t | n_grams = 1 , |
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int32_t | skips = 0 |
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Constructor Creates tokens on whitespace
hash_bits | the number of bits of the hash. Means a dimension of size 2^(hash_bits). |
normalize | whether to normalize vectors or not |
n_grams | the max number of tokens to consider when combining tokens |
skips | the max number of tokens to skip when combining tokens |
Definition at line 29 of file HashedDocConverter.cpp.
CHashedDocConverter | ( | CTokenizer * | tzer, |
int32_t | hash_bits, | ||
bool | normalize = false , |
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int32_t | n_grams = 1 , |
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int32_t | skips = 0 |
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) |
Constructor
tzer | the tokenizer to use |
hash_bits | the number of bits of the hash. Means a dimension of size 2^(hash_bits). |
normalize | whether to normalize vectors or not |
n_grams | the max number of tokens to consider when combining tokens |
skips | the max number of tokens to skip when combining tokens |
Definition at line 35 of file HashedDocConverter.cpp.
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virtual |
Destructor
Definition at line 41 of file HashedDocConverter.cpp.
Hashes each string contained in features
features | the strings to be hashed. Must be an instance of CStringFeatures. |
Implements CConverter.
Definition at line 82 of file HashedDocConverter.cpp.
SGSparseVector< float64_t > apply | ( | SGVector< char > | document | ) |
Hashes the tokens contained in document
document | the char vector to tokenize and hash |
Reading n+s-1 tokens
Reading token and storing index to hashed_indices
For remaining combinations
Normalizing vector
Definition at line 102 of file HashedDocConverter.cpp.
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inherited |
Builds a dictionary of all parameters in SGObject as well of those of SGObjects that are parameters of this object. Dictionary maps parameters to the objects that own them.
dict | dictionary of parameters to be built. |
Definition at line 1196 of file SGObject.cpp.
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virtualinherited |
Creates a clone of the current object. This is done via recursively traversing all parameters, which corresponds to a deep copy. Calling equals on the cloned object always returns true although none of the memory of both objects overlaps.
Definition at line 1313 of file SGObject.cpp.
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This method takes a dynamic array as an argument, sorts it and returns the number of the distinct elements(indices here) in the array.
hashed_indices | the array to sort and count elements |
Counting nnz features
Definition at line 215 of file HashedDocConverter.cpp.
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protected |
This method takes the dynamic array containing all the hashed indices of a document and returns a compact sparse representation with each index found and with the count of such index
hashed_indices | the array containing the hashed indices |
Definition at line 171 of file HashedDocConverter.cpp.
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virtualinherited |
A deep copy. All the instance variables will also be copied.
Definition at line 160 of file SGObject.h.
Recursively compares the current SGObject to another one. Compares all registered numerical parameters, recursion upon complex (SGObject) parameters. Does not compare pointers!
May be overwritten but please do with care! Should not be necessary in most cases.
other | object to compare with |
accuracy | accuracy to use for comparison (optional) |
Definition at line 1217 of file SGObject.cpp.
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static |
Generate all the k-skip ngram combinations for the tokens in the CDynArray hashes and then hash limit them to a specific dimension
hashes | the hashes of the tokens to combine as k-skip ngrams |
ngram_hashes | the dynamic array in which to store the created indices |
num_bits | the dimension in which to limit the hashed indices (means a dimension of size 2^num_bits) |
ngrams | the max number of tokens to combine |
tokens_to_skip | the max number of tokens to skip when combining (starting always from the second one) |
Definition at line 192 of file HashedDocConverter.cpp.
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inherited |
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inherited |
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inherited |
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inherited |
Definition at line 1100 of file SGObject.cpp.
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inherited |
Returns description of a given parameter string, if it exists. SG_ERROR otherwise
param_name | name of the parameter |
Definition at line 1124 of file SGObject.cpp.
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inherited |
Returns index of model selection parameter with provided index
param_name | name of model selection parameter |
Definition at line 1137 of file SGObject.cpp.
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virtual |
Reimplemented from CConverter.
Definition at line 77 of file HashedDocConverter.cpp.
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protected |
init
Definition at line 46 of file HashedDocConverter.cpp.
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virtualinherited |
If the SGSerializable is a class template then TRUE will be returned and GENERIC is set to the type of the generic.
generic | set to the type of the generic if returning TRUE |
Definition at line 268 of file SGObject.cpp.
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inherited |
maps all parameters of this instance to the provided file version and loads all parameter data from the file into an array, which is sorted (basically calls load_file_parameter(...) for all parameters and puts all results into a sorted array)
file_version | parameter version of the file |
current_version | version from which mapping begins (you want to use Version::get_version_parameter() for this in most cases) |
file | file to load from |
prefix | prefix for members |
Definition at line 673 of file SGObject.cpp.
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inherited |
loads some specified parameters from a file with a specified version The provided parameter info has a version which is recursively mapped until the file parameter version is reached. Note that there may be possibly multiple parameters in the mapping, therefore, a set of TParameter instances is returned
param_info | information of parameter |
file_version | parameter version of the file, must be <= provided parameter version |
file | file to load from |
prefix | prefix for members |
Definition at line 514 of file SGObject.cpp.
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virtualinherited |
Load this object from file. If it will fail (returning FALSE) then this object will contain inconsistent data and should not be used!
file | where to load from |
prefix | prefix for members |
param_version | (optional) a parameter version different to (this is mainly for testing, better do not use) |
Definition at line 345 of file SGObject.cpp.
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protectedvirtualinherited |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_POST is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CKernel, CWeightedDegreePositionStringKernel, CList, CAlphabet, CLinearHMM, CGaussianKernel, CInverseMultiQuadricKernel, CCircularKernel, and CExponentialKernel.
Definition at line 1029 of file SGObject.cpp.
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protectedvirtualinherited |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_PRE is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, CDynamicArray< uint64_t >, and CDynamicObjectArray.
Definition at line 1024 of file SGObject.cpp.
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inherited |
Takes a set of TParameter instances (base) with a certain version and a set of target parameter infos and recursively maps the base level wise to the current version using CSGObject::migrate(...). The base is replaced. After this call, the base version containing parameters should be of same version/type as the initial target parameter infos. Note for this to work, the migrate methods and all the internal parameter mappings have to match
param_base | set of TParameter instances that are mapped to the provided target parameter infos |
base_version | version of the parameter base |
target_param_infos | set of SGParamInfo instances that specify the target parameter base |
Definition at line 711 of file SGObject.cpp.
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protectedvirtualinherited |
creates a new TParameter instance, which contains migrated data from the version that is provided. The provided parameter data base is used for migration, this base is a collection of all parameter data of the previous version. Migration is done FROM the data in param_base TO the provided param info Migration is always one version step. Method has to be implemented in subclasses, if no match is found, base method has to be called.
If there is an element in the param_base which equals the target, a copy of the element is returned. This represents the case when nothing has changed and therefore, the migrate method is not overloaded in a subclass
param_base | set of TParameter instances to use for migration |
target | parameter info for the resulting TParameter |
Definition at line 918 of file SGObject.cpp.
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protectedvirtualinherited |
This method prepares everything for a one-to-one parameter migration. One to one here means that only ONE element of the parameter base is needed for the migration (the one with the same name as the target). Data is allocated for the target (in the type as provided in the target SGParamInfo), and a corresponding new TParameter instance is written to replacement. The to_migrate pointer points to the single needed TParameter instance needed for migration. If a name change happened, the old name may be specified by old_name. In addition, the m_delete_data flag of to_migrate is set to true. So if you want to migrate data, the only thing to do after this call is converting the data in the m_parameter fields. If unsure how to use - have a look into an example for this. (base_migration_type_conversion.cpp for example)
param_base | set of TParameter instances to use for migration |
target | parameter info for the resulting TParameter |
replacement | (used as output) here the TParameter instance which is returned by migration is created into |
to_migrate | the only source that is used for migration |
old_name | with this parameter, a name change may be specified |
Definition at line 858 of file SGObject.cpp.
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inherited |
prints all parameter registered for model selection and their type
Definition at line 1076 of file SGObject.cpp.
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virtualinherited |
prints registered parameters out
prefix | prefix for members |
Definition at line 280 of file SGObject.cpp.
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virtualinherited |
Save this object to file.
file | where to save the object; will be closed during returning if PREFIX is an empty string. |
prefix | prefix for members |
param_version | (optional) a parameter version different to (this is mainly for testing, better do not use) |
Definition at line 286 of file SGObject.cpp.
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protectedvirtualinherited |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_POST is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CKernel.
Definition at line 1039 of file SGObject.cpp.
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protectedvirtualinherited |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_PRE is called.
ShogunException | Will be thrown if an error occurres. |
Reimplemented in CKernel, CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, CDynamicArray< uint64_t >, and CDynamicObjectArray.
Definition at line 1034 of file SGObject.cpp.
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set generic type to T
Definition at line 41 of file SGObject.cpp.
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inherited |
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set the parallel object
parallel | parallel object to use |
Definition at line 220 of file SGObject.cpp.
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set the version object
version | version object to use |
Definition at line 255 of file SGObject.cpp.
void set_k_skip_n_grams | ( | int32_t | k, |
int32_t | n | ||
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Method used to specify the parameters for the quadratic approach of k-skip n-grams. See class description for more details and an example.
k | the max number of allowed skips |
n | the max number of tokens to combine |
Definition at line 238 of file HashedDocConverter.cpp.
void set_normalization | ( | bool | normalize | ) |
specify whether hashed vector should be normalized or not
normalize | whether to normalize |
Definition at line 233 of file HashedDocConverter.cpp.
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virtualinherited |
A shallow copy. All the SGObject instance variables will be simply assigned and SG_REF-ed.
Reimplemented in CGaussianKernel.
Definition at line 151 of file SGObject.h.
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inherited |
unset generic type
this has to be called in classes specializing a template class
Definition at line 275 of file SGObject.cpp.
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virtualinherited |
Updates the hash of current parameter combination.
Definition at line 227 of file SGObject.cpp.
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inherited |
io
Definition at line 514 of file SGObject.h.
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parameters wrt which we can compute gradients
Definition at line 529 of file SGObject.h.
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Hash of parameter values
Definition at line 535 of file SGObject.h.
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model selection parameters
Definition at line 526 of file SGObject.h.
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map for different parameter versions
Definition at line 532 of file SGObject.h.
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parameters
Definition at line 523 of file SGObject.h.
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the number of consecutives tokens for quadratic
Definition at line 144 of file HashedDocConverter.h.
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the number of bits of the hash
Definition at line 135 of file HashedDocConverter.h.
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parallel
Definition at line 517 of file SGObject.h.
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whether to normalize or not
Definition at line 141 of file HashedDocConverter.h.
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the tokenizer
Definition at line 138 of file HashedDocConverter.h.
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the number of tokens to skip
Definition at line 147 of file HashedDocConverter.h.
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version
Definition at line 520 of file SGObject.h.