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SHOGUN
4.1.0
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SHOGUN
4.1.0
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This is the complete list of members for CGUIKernel, including all inherited members.
| add_kernel(CKernel *kern, float64_t weight=1) | CGUIKernel | |
| build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject * > *dict) | CSGObject | |
| CGUIKernel() | CGUIKernel | |
| CGUIKernel(CSGInterface *interface) | CGUIKernel | |
| clean_kernel() | CGUIKernel | |
| clone() | CSGObject | virtual |
| create_chi2(int32_t size=10, float64_t width=1) | CGUIKernel | |
| create_combined(int32_t size=10, bool append_subkernel_weights=false) | CGUIKernel | |
| create_commstring(int32_t size=10, bool use_sign=false, char *norm_str=NULL, EKernelType ktype=K_WEIGHTEDCOMMWORDSTRING) | CGUIKernel | |
| create_const(int32_t size=10, float64_t c=1) | CGUIKernel | |
| create_custom(float64_t *kmatrix, int32_t num_feat, int32_t num_vec, bool source_is_diag, bool dest_is_diag) | CGUIKernel | |
| create_diag(int32_t size=10, float64_t diag=1) | CGUIKernel | |
| create_distance(int32_t size=10, float64_t width=1) | CGUIKernel | |
| create_fixeddegreestring(int32_t size=10, int32_t d=3) | CGUIKernel | |
| create_gaussian(int32_t size=10, float64_t width=1) | CGUIKernel | |
| create_gaussianshift(int32_t size=10, float64_t width=1, int32_t max_shift=0, int32_t shift_step=1) | CGUIKernel | |
| create_histogramword(int32_t size=10) | CGUIKernel | |
| create_linear(int32_t size=10, float64_t scale=-1) | CGUIKernel | |
| create_linearbyte(int32_t size=10, float64_t scale=-1) | CGUIKernel | |
| create_linearstring(int32_t size=10, float64_t scale=-1) | CGUIKernel | |
| create_linearword(int32_t size=10, float64_t scale=-1) | CGUIKernel | |
| create_localalignmentstring(int32_t size=10) | CGUIKernel | |
| create_localityimprovedstring(int32_t size=10, int32_t length=3, int32_t inner_degree=3, int32_t outer_degree=1, EKernelType ktype=K_LOCALITYIMPROVED) | CGUIKernel | |
| create_matchwordstring(int32_t size=10, int32_t d=3, bool normalize=true) | CGUIKernel | |
| create_oligo(int32_t size, int32_t k, float64_t width) | CGUIKernel | |
| create_poly(int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) | CGUIKernel | |
| create_polymatchstring(int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) | CGUIKernel | |
| create_polymatchwordstring(int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) | CGUIKernel | |
| create_salzbergword(int32_t size=10) | CGUIKernel | |
| create_sigmoid(int32_t size=10, float64_t gamma=0.01, float64_t coef0=0) | CGUIKernel | |
| create_sparsegaussian(int32_t size=10, float64_t width=1) | CGUIKernel | |
| create_sparselinear(int32_t size=10, float64_t scale=-1) | CGUIKernel | |
| create_sparsepoly(int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) | CGUIKernel | |
| create_spectrummismatchrbf(int32_t size=10, float64_t *AA_matrix=NULL, int32_t nr=128, int32_t nc=128, int32_t max_mismatch=1, int32_t degree=1, float64_t width=1) | CGUIKernel | |
| create_tppk(int32_t size, float64_t *km, int32_t rows, int32_t cols) | CGUIKernel | |
| create_wavelet(int32_t size=10, float64_t Wdilation=5.0, float64_t Wtranslation=2.0) | CGUIKernel | |
| create_weighteddegreepositionstring(int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t length=0, int32_t center=0, float64_t step=1) | CGUIKernel | |
| create_weighteddegreepositionstring2(int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t *shifts=NULL, int32_t length=0, bool use_normalization=true) | CGUIKernel | |
| create_weighteddegreepositionstring3(int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t *shifts=NULL, int32_t length=0, int32_t mkl_stepsize=1, float64_t *position_weights=NULL) | CGUIKernel | |
| create_weighteddegreerbf(int32_t size=10, int32_t degree=1, int32_t nof_properties=1, float64_t width=1) | CGUIKernel | |
| create_weighteddegreestring(int32_t size=10, int32_t order=3, int32_t max_mismatch=1, bool use_normalization=true, int32_t mkl_stepsize=1, bool block_computation=true, int32_t single_degree=-1) | CGUIKernel | |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| deep_copy() const | CSGObject | virtual |
| del_last_kernel() | CGUIKernel | |
| delete_kernel_optimization() | CGUIKernel | |
| equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false) | CSGObject | virtual |
| get_global_io() | CSGObject | |
| get_global_parallel() | CSGObject | |
| get_global_version() | CSGObject | |
| get_kernel() | CGUIKernel | |
| get_modelsel_names() | CSGObject | |
| get_modsel_param_descr(const char *param_name) | CSGObject | |
| get_modsel_param_index(const char *param_name) | CSGObject | |
| get_name() const | CGUIKernel | virtual |
| init_kernel(const char *target) | CGUIKernel | |
| init_kernel_optimization() | CGUIKernel | |
| initialized | CGUIKernel | protected |
| io | CSGObject | |
| is_generic(EPrimitiveType *generic) const | CSGObject | virtual |
| is_initialized() | CGUIKernel | |
| kernel | CGUIKernel | protected |
| load_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
| load_serializable_post() | CSGObject | protectedvirtual |
| load_serializable_pre() | CSGObject | protectedvirtual |
| m_gradient_parameters | CSGObject | |
| m_hash | CSGObject | |
| m_model_selection_parameters | CSGObject | |
| m_parameters | CSGObject | |
| parallel | CSGObject | |
| parameter_hash_changed() | CSGObject | virtual |
| precompute_subkernels() | CGUIKernel | |
| print_modsel_params() | CSGObject | |
| print_serializable(const char *prefix="") | CSGObject | virtual |
| resize_kernel_cache(int32_t size) | CGUIKernel | |
| save_kernel(char *filename) | CGUIKernel | |
| save_serializable(CSerializableFile *file, const char *prefix="") | CSGObject | virtual |
| save_serializable_post() | CSGObject | protectedvirtual |
| save_serializable_pre() | CSGObject | protectedvirtual |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_generic() | CSGObject | |
| set_global_io(SGIO *io) | CSGObject | |
| set_global_parallel(Parallel *parallel) | CSGObject | |
| set_global_version(Version *version) | CSGObject | |
| set_kernel(CKernel *kern) | CGUIKernel | |
| set_normalization(char *normalization, float64_t c=0.0, float64_t r=0.0) | CGUIKernel | |
| set_optimization_type(char *opt_type) | CGUIKernel | |
| shallow_copy() const | CSGObject | virtual |
| ui | CGUIKernel | protected |
| unset_generic() | CSGObject | |
| update_parameter_hash() | CSGObject | virtual |
| version | CSGObject | |
| ~CGUIKernel() | CGUIKernel | |
| ~CSGObject() | CSGObject | virtual |