IRC logs of #shogun for Tuesday, 2011-04-26

--- Log opened Tue Apr 26 00:00:37 2011
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ZiyuanSo no one is selected for KFA03:39
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blackburnmorge!09:18
blackburnn*09:18
blackburn:)09:18
blackburnsonney2k: what's up with my 'introduction', is it alright?09:18
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@sonney2kblackburn, yes thanks09:36
blackburnsonney2k: I even received some reference to diffusion maps technique from Jesse Berwald09:38
blackburnit was a good idea to ask for some good papers :)09:39
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heikohi there11:33
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@sonney2kHi heiko - saw your mail was directed to us personally - would you mind to send it to the mailinglist?12:01
heikohi, oh I thought I did. Ok I will resend it12:01
@sonney2kthanks12:02
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@sonney2kheiko, ahh you replied to my email - that explains it :)12:24
@sonney2kf-x`, are you frx?12:36
@sonney2ksploving, do you have some time? If sou would you mind trying to already now get a minimal java example to work?12:43
@sonney2ksploving, I mean this week?12:43
splovingthis week, it is ok, but not today12:43
@sonney2ksploving, np12:44
splovingsonney2k, do you mean that I should finish java first?12:44
@sonney2kit is just better to make some progress this week such that when I am away for some time you know what to do / and mikio can sufficiently help12:45
splovingok. enjoy your life with family12:45
@sonney2ksploving, I now know you can easily do lua - right? So even running a minimal java example and writing a simple typemap for java would convince me that the project is in good hands :)12:46
@bettyboo8)12:46
@sonney2ksploving, will be a tough time with close to zero sleep...12:46
@sonney2kf-x`, you are :)12:47
@sonney2kI think we need to discuss this issue we currently discuss on github here12:48
splovingsonney2k, are mikio in irc? or when I have quesition, use the email?12:48
splovinganother thing, when you are away, do you check email? or do you have the time to check the github?12:49
@sonney2ksploving, so far use email - I didn't discuss with the mentors yet12:49
@sonney2ksploving, I will somehow manage or someone else will do for me.12:50
splovingsonney2k, ok.12:51
@sonney2kheiko, around?12:51
heikohi, yes now13:05
heikowas out for lunch13:05
heikodoes the current git compile for you? mine fails13:06
heikodistributions/Gaussian.cpp:62: error: ‘clapack_dpotri’ was not declared in this scope13:08
heikoi suppose this is caused by some #defines13:08
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f-xsonney2k: yes, this is frx :)14:28
@bettyboo:Q14:28
f-xhated my old nick actually14:28
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@sonney2kheiko, could it be that you don't have the most recent git?14:42
heikosonney2k, no I am up-to-date14:43
heikoI commented out the line for now ...14:44
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@sonney2kheiko, hmmhh and you have lapack installed but not atlas?14:45
heikoyes14:46
@sonney2kheiko, what I don't understand is that libshogun/lib/lapack.cpp contains the definition for  clapack_dpotri then14:48
heikoyes, strange ...14:49
@sonney2kheiko, ahh found the problem - it is missing in the laapack.h14:50
@sonney2kfixing...14:50
CIA-110shogun: Soeren Sonnenburg master * rc08a1e4 / src/libshogun/lib/lapack.h : add clapack_dpotri definition to header file - http://bit.ly/igDfoZ14:50
@sonney2kalesis-novik, splovin, f-x, which timezone are you in?14:51
f-x6:22 PM now14:51
f-xsonney2k: me at GMT+5:3014:51
heikosonney2k, you fixed it :)14:52
@sonney2kheiko, so it works?14:52
heikothink so...14:53
@sonney2kheiko - I don't know how much time you have this week but it would be important to make some progress on the parameter concept14:53
heikoyes, I think so14:54
heikoI have time14:54
@sonney2kgreat!14:54
heikojust started a bit on a class for generating indices, but this can wait14:54
heikoI also had a brief look at scikit-learn14:55
@sonney2kyour poc code was fine with me what is missing now is to be able to actually set parameters :)14:55
@bettyboosonney2k, :*)14:55
@sonney2kf-x, OK....14:55
heikosome questions on this:14:55
@sonney2kI think we should have a kick-off meeting with all the mentors rathor soon14:55
heikoit should be possible only to select certain variables for x-val14:56
@sonney2kheiko, I will probable be 100% away starting from tuesday next week for 1-2 weeks. so we should try hard to have the concept ready - you could then easily implement the feature index things for simple / sparse features and write some python examples for that14:57
@sonney2k(while I am away)14:57
heikook14:58
@sonney2kheiko, I would propose to introduce a abstract function void register_param()=0; in CSGObject14:58
heikoso I will concentrate on that14:58
@sonney2kor at least every class needs a private method like that14:58
@sonney2kand call it upon construction14:58
heikook, and all parameters are registered in this method14:59
@sonney2kand then we have 2 parameter objects one for x-val and one for serialization14:59
@sonney2kyes14:59
heikoshould this parameter object contain parameters which are AVAILABLE for x-validation or these that are actually used14:59
@sonney2kwhile that is easy to do (but a lot of work) setting / getting is more difficult15:00
@sonney2kheiko, all AVAILABLE15:00
heikook15:00
heikoso they are acutally included by these setters15:00
@sonney2kserialization you mean?15:00
@sonney2kx-val param is a subset of serialization param if you meant that15:01
heikono i mean if you want to only determine one of the parameters by cross-val and let the other one stay fixed15:01
@sonney2kheiko, one has to specify the parameters one wants to do model selection for15:01
@sonney2kand x-val is done for all of them who are specified15:02
@sonney2kthe others have default values15:02
heikoyes, ok15:02
heikothis is the way as it works on scikit-learn. you give the name of all parameters to a gridSearch class for example15:03
@sonney2kI am thinking of passing some kind of lists of parameter ranges to the model selection object that then generates an instance with a fixed parameter setting which then can be directly set using the x-val param15:03
@sonney2ksounds great - so we could have a modelselection base class and then overload certain functions to do e.g. grid search  or so15:04
heikoyes, I also thought of something like this15:04
heikoin addition to parameter ranges, the type is also important, natural numbers, real ... and also the type of iteration: linearly, exponentially15:06
@sonney2kheiko, yes - we should be able to derive that from our CParameter class for the parameters - but I guess will need some extrensions15:07
heikook, but what did you want to say about the setting/getting of parameters?15:08
@sonney2kheiko, yes - we can easily register parameters using either abstract or non abstract register_param() classes15:09
@sonney2kbut now we need to set / get the values15:09
@sonney2kand that is currently missing15:10
heikodo you think this should work by name?15:11
heikoparameter name I mean15:11
@sonney2kheiko, yes but we know the name - look at base/CParameter.h15:12
@sonney2kthere is currently only a load / save function though15:12
@sonney2kthe loading/saving of shogun parameters is done via CSGObject::load_serializable() etc but it will do that for all parameters and from file only15:13
heikobut we need to be able to set each parameter separately15:14
@sonney2kheiko, yeah look at Parameter.cpp - line 161915:14
@sonney2kthat does it already - but from file15:15
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heikoreading ...15:19
heikoare there actually any non-scalar type parameters?15:19
heiko(to be determined)15:19
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heikosonney2k, I have some duties now for 90 minutes. are you still there afterwards? If not, I will be online tomorrow from about 10:30am german time.15:42
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@sonney2kheiko, ok - yes it works for matrices sg objects etc15:44
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@sonney2kjust ping me - I might be around in the evening15:44
heikono i meant cross-validationm parameters15:44
@sonney2kheiko, ? but it is the same thing?15:45
@sonney2kparameters work for scalars, vectors, matrices, SGObjects15:45
@sonney2kthough we will probably start with scalars :)15:45
heiko;) hehe, ok ... see you later15:46
@bettyboofunny15:46
@sonney2kstrings and sparse matrices of course15:46
@sonney2kok later15:46
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@sonney2kwow! nice thunderstorm over berlin16:29
serialhexi love thunderstorms16:49
serialhexgood morning/evening/night all! :P16:50
serialhex...is anyone awake in here???16:55
@sonney2kas always :)17:11
@bettyboo<:*)17:11
serialhexsonney2k, any news on the additional student thing??17:17
@sonney2knot yet17:20
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serialhexoi blackburn, how are you today??17:50
blackburnhello :)17:50
blackburnfine, just came home, how are you?17:50
serialhexpretty good, jut finishing breakfast :D17:50
blackburnnow watching for new screen for my broken glofiish x800 :)18:04
serialhexdo wah??  800 broken glofish on your new screen???18:06
* serialhex is confused :P18:06
blackburnah sorry seems my english is terrible again :)18:07
blackburnI broke my smartphone18:07
blackburnGlofiish x80018:07
blackburnand now want to order new touchscreen :)18:07
@bettybooyep18:08
serialhexahh, i see18:08
serialhexi thought you had 800 glo_fish_ (whatever kind of fish that is) that were broken (how one can break a fish IDK!) and you were watching a new screen for them for some reason :P18:09
blackburn:D such a strange18:10
serialhexit's ok that your engligh is a bit broken, it's usually humorous18:10
blackburnhaving better english could be better for me :)18:10
serialhexwell i hope you get a new screen, from my expierence though it's almost easier (and cheaper) to buy a new phone/laptop (it's almost certainly cheaper to do that with laptops, i can't seem to ever find screens for laptops)18:12
serialhexand the more you speek & practice the better you will get at english, so dont worry :D18:13
blackburnserialhex: it is 20$ cost so I hope I will get one18:14
serialhexthe screen is $20???  that either way inexpencive or the american dollar is WAY inflated :P18:15
serialhex(oh, and a tip blackburn, my spelling sometimes really sucks, so don't try and spell like me)18:16
blackburnI don't know I just write what comes in my mind :)18:17
serialhexno problem18:17
blackburnmay be will have time for some grammar exercises ;)18:17
serialhexbut $20 for a phone screen??  do you have any pictures of this phone??18:17
* serialhex thinks that can be my summer project for shogun :P18:18
blackburnhttp://cgi.ebay.com/NEW-LCD-Screen-E-TEN-ETEN-Glofiish-X800-X500-/220717400358?pt=LH_DefaultDomain_0&hash=item3363c84126#ht_1909wt_90718:18
blackburnin case we can trust it :)18:18
serialhexyeah :)18:19
serialhexhow about pics of the phone itself??18:19
serialhexno worries got it18:19
blackburn:)18:20
blackburnwas just searching for some good one18:20
serialhexeww, it's one of those windoze things... :P18:20
serialhexPeople say that if you play Microsoft CD’s backwards, you hear satanic things, but that’s nothing, because if you play them forwards, they install Windows.18:21
blackburnyeah, i don't like it too :)18:21
serialhexthough it looks spiffy... besides the OS i like it!18:21
blackburnanyway now I use my old ericsson :) and not _sony_ ericsson18:22
serialhexcool, do you know if you have gsm or cdma type cell service there??18:22
blackburngsm18:23
serialhexfigured... my bro is a cellphone-tech fanatic and said gsm is everywhere, just double checking his info :P18:23
@bettyboololomat18:23
blackburnI even don't know if there was cdma18:24
serialhexafaik, it's only in the us, south korea and like uzbekistan or somewhere....18:24
blackburnuzbekistan :D18:25
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serialhexyeah.... it's some country in the middle of eastern europe or the desert somewhere... it may be located on mars even, idk :D18:26
blackburnahh, have to go now18:28
blackburnwill be a bit later ;)18:29
serialhexok, take care!!18:29
* serialhex feels like an idiot, uzbekistan is a real country :P18:30
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blackburnyeah, uzbekistan is a real country :)19:10
serialhexblackburn, they dont teach geography very well here in the states... i'd be suprised if most americans could name half of the 50 states (i know i can't name all of them :P)19:59
blackburnserialhex: I can't name them too :)20:00
@bettyboololomat20:00
serialhexyeah, but you dont live here :P20:00
blackburnbut I know all NHL teams :)20:00
serialhexlol, nice!!20:01
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@sonney2kblackburn, Здравствуйте!20:24
blackburnwow :) sonney2k, добрый вечер!20:25
CIA-110shogun: Soeren Sonnenburg master * r219ee4a / src/modular/Evaluation.i :20:25
CIA-110shogun: Rename base class Evaluation to BaseEvaluation to fix naming clash in20:25
CIA-110shogun: java_modular - http://bit.ly/hwInMU20:25
@sonney2kindeed more appropriate20:25
CIA-110shogun: Soeren Sonnenburg master * r110c451 / src/configure :20:25
CIA-110shogun: Include linux path in jni generation and improve java detection for20:25
CIA-110shogun: official jdk's. - http://bit.ly/gW9h0w20:25
CIA-110shogun: Soeren Sonnenburg master * r7233fdb / (5 files):20:25
CIA-110shogun: Add missing includes for feature type and compressor type and re-enable20:25
CIA-110shogun: init_shogun / exit_shogun such that these can be called from20:25
CIA-110shogun: java_modular. - http://bit.ly/eaDv1z20:25
CIA-110shogun: Soeren Sonnenburg master * rd91b629 / (3 files in 3 dirs):20:25
CIA-110shogun: Include FeatureType.h needed by these modules and drop unused classify20:25
CIA-110shogun: function causing trouble in java modular. - http://bit.ly/gN9QIU20:25
-!- CIA-110 was kicked from #shogun by bettyboo [flood]20:25
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@sonney2kpoor cia bot20:25
@sonney2kmlsec, can't you add an exception for CIA-*?20:26
@sonney2khmmhh, does alesis-novik has his exams today?20:26
@sonney2kdoes anyone know?20:26
@sonney2kahh btw, blackburn which timezone are you in?20:27
blackburnsonney2k: it seems so20:27
@sonney2kUTC+3?20:27
blackburnsonney2k: moscow, +2 from you20:27
blackburnyeah20:27
@sonney2kwe are UTC+2 currently (daylight saving time!)20:27
blackburnah20:27
blackburnso is it ~21-27 in germany?20:27
@sonney2kno 20:2720:28
blackburnhm20:28
blackburnI'm tangled :)20:28
@sonney2kblackburn, and what's your local time now?20:28
blackburnis utc+2 = gmt+1?20:28
blackburn22-2820:28
@sonney2kso UTC+420:28
blackburnoh I see20:29
blackburnyes it is utc+420:29
@sonney2kblackburn, check yourselve http://timeanddate.com/worldclock/city.html?n=3720:29
@sonney2kI'd like to meet tomorror here on IRC at 13:00 UTC20:29
@sonney2kwith all potential mentors/students20:29
@sonney2k(time is pressing a bit here - I only have 6 more days...)20:29
blackburnseems I can't :(20:30
blackburnhave studies at univesity..20:30
blackburnuniversity*20:31
@sonney2ktoo bad - I cannot really postpone it now.20:31
@sonney2kso you will have to check the channel logs then20:31
blackburnsonney2k: what kind of meeting it is?20:31
@sonney2kblackburn, just introduction to mentors/students and how we plan to proceed in general20:32
@sonney2kf-x, are you around ?20:32
f-xyes, yes!20:32
blackburnsonney2k: is it okay I will only check the logs?20:33
@sonney2kf-x, ahh great. I still don't understand why you want to allocate everything in one block!20:33
@sonney2kblackburn, yes sure - you can talk to chris / mlsec later too.20:33
blackburnI will be around tomorrow till 8-30 utc20:33
@sonney2kblackburn, I think both of them will still sleep20:34
f-xsonney2k: no particular reason.... i thought that was similar to the way done in VW, that's all20:34
blackburnsonney2k: I already have some discussion with chris. but mlsec..?20:34
f-xi can do it in two separate blocks, like i mentioned20:34
@sonney2kf-x, using new[] is beneficial in the sense that we have proper exception handling in case of out of memory20:34
alesis-novikGood evening20:34
blackburnalesis-novik: hello, how are your exams?20:34
@sonney2kblackburn, ok I mean I will talk to them so no problem.20:35
alesis-novikhorribly wrong :/20:35
@sonney2kalesis-novik, hmhhh - what timezone are you in?20:35
alesis-novik0(or +1 due to DST)20:35
@sonney2kUTC+1 ?20:36
blackburnsonney2k: I mean why mlsec?20:36
alesis-novikBST, I think it is UTC+120:36
@sonney2kalesis-novik,  try http://timeanddate.com/worldclock/city.html?n=3720:37
@sonney2kblackburn, he is your co-mentor20:37
blackburnsonney2k: I'm surprised :D20:38
blackburna lot surprised20:38
alesis-noviksonney2k, yes, it's UTC+1 during the summer20:38
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alesis-novikWhy do you need the time zone info?20:39
serialhexsonney2k: blackburn is in the same timezone as moscow; alesis-novik is in london... and i think i have a few more here :P20:39
@sonney2kalesis-novik, wanted to discuss about how to proceed tomorrow 13:00 UTC20:39
alesis-novikI'll have an exam 13:30...20:39
-!- ChanServ changed the topic of #shogun to: Shogun Machine Learning Toolbox | We participate in GSoC with 5 projects http://bit.ly/eI31bL | Kick-off meeting Wednesday Apr 26 at 13:00 UTC | Channel logs http://bit.ly/eQDk8Q20:40
blackburnsonney2k: can we proceed it for example at 16-00 utc? :)20:40
@sonney2kalesis-novik, yes sorry it is too short notice and we are too many anyways...20:41
@sonney2kI mean 5 mentors + 5 students20:41
@sonney2kno way everyone will have time20:41
@sonney2kblackburn, we can have another meeting at a later time point.20:42
serialhexyeah, but during the meeting they're going to say bad things about you blackburn and then erase it from the log :P20:43
@sonney2ksploving, around?20:43
@sonney2kserialhex, exactly!20:43
@sonney2kthat is what we do usually when blackburn is not online :D20:43
blackburn:D20:43
blackburnyou will criticize my idea about stalin and lenin :`(20:44
alesis-novikAnd I won't be there to defend it20:44
blackburnawful!20:44
serialhexdont worry blackburn, i'll be able to tell you all the horrible things they say about you... unless sonney2k threatens me :(20:44
* sonney2k considers this a chance!20:44
serialhexlol20:44
* sonney2k finally fixed the baby buggy wheel - yikes!20:45
blackburnserialhex: just do not trust I have my own nuclear missile and drinking vodka with background of balalayka music20:45
alesis-novikGood job sonney2k.20:45
@sonney2kanyway, sploving I finally gotten a minimal java example to work with shogun :)20:45
serialhexsweet!!  i was getting worried about your mechanical skills for a second there sonney2k20:45
serialhexlol blackburn!!!20:45
@sonney2kserialhex, does buying a new inner tube count?20:46
@sonney2kit was just too perforated ...20:46
serialhexhey, at least you _fixed_ it... most people here would just buy a new one :-/20:47
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blackburnserialhex: no! I will drink vodka and break the whole buggy in that case20:47
@sonney2kserialhex, well I had to buy a new one - didn't work20:47
@sonney2kblackburn, by putting a nuclear missle on top20:47
@sonney2kI guess20:47
blackburnsonney2k: and putting a bear inside20:48
@sonney2kf-x, no way you can get a more reliable IRC client?20:48
alesis-novikblackburn, just get the bear from the street right? I mean, polar bears still roam the streets of Moscow, don't they?20:49
@sonney2kf-x, using malloc etc would work but since we already get nice exceptions in shogun when new or new[] fails I would prefer that20:49
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blackburnalesis-novik: oh thank you I have to walk on with my bear20:49
serialhexsonney2k: you bought a new inner tube... i know people here who would buy a new buggy!20:49
@sonney2kf-x, offline again?20:50
f-xsonney2k: internet's pathetic right now.. it will be alright tomorrow onwards, hopefully..20:50
blackburnsorry I launched my missile to India :D20:51
alesis-novikserialhex, ah you 'mericuns (extreme generalization) (I hope I got the country right)20:51
f-xtrying through my phone now..20:51
blackburnamerikun20:51
serialhexalesis-novik you didn't get it right, blackburn did :P20:52
serialhexit's more like U.S. and everyone else is Them :D20:52
* sonney2k celebrates the first shogun java example http://pastebin.com/59EwA0X420:53
alesis-novikserialhex, dammit. From what I hear, people tend to use antibiotics for everything in the US, is that true?20:53
@sonney2kf-x, ahh that limits your typing speed... did you see my last messages?20:53
f-xsonney2k: i see.. so i'll change the code to make two memory blocks - one for example objects, other for feature vectors.. is that okay?20:53
@sonney2kf-x, I am always confused when you say example object. What is that?20:54
serialhexthere are a lot of people who take drugs for various things alesis-novik... though for _everything_ not really20:54
@sonney2kto me feature vector is just some float64_t*20:54
@sonney2kI mean the actual array20:54
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serialhexfor instance: my mom is all into organic/holistic stuff, and is *certain* that organic things are all good for you (even after i point out that poison ivy is _organic_ and offer it to her in a salad, she still dosnt want it for some reason :P )20:55
f-xoh no! i see 'activity' flashing in the title, but can't figure out how to scroll down the frame in opera mobile!! x(20:55
alesis-novikAnywau,20:56
alesis-novikAnyway, off to study for tomorrows exam20:56
serialhexand i'm off to the college for a bit... later all!20:56
@sonney2kalesis-novik, good luck!20:56
@sonney2kl8r20:56
alesis-novikHopefully it will go better than today's one...20:56
alesis-novikSee you20:56
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@sonney2kf-x_, <sonney2k> f-x, I am always confused when you say example object. What is that?20:57
@sonney2k<serialhex> there are a lot of people who take drugs for various things alesis-novik... though for _everything_ not really20:57
@sonney2k<sonney2k> to me feature vector is just some float64_t*20:57
@sonney2k<sonney2k> I mean the actual array20:57
@sonney2k^^^ seen that?20:57
f-x_sonney2k: saw now, but screen fast filling up!20:58
@sonney2kf-x, you really need to get a real irc client... on my mobile I use andchat ...20:59
@sonney2kanyways I don't understand why you need more than 1 alloc20:59
f-x_example object has label, length and pointer to the vector only.. the actual vector is in the space alloced by new20:59
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@sonney2kf-x_, but you know beforehand that your buffer can store / prefetch say 1000 objects only21:00
@sonney2kso you could allocate the label and length objects already then21:01
@sonney2kand only allocate the vector when you read it.21:01
f-x_sonney2k: true, but then i'd have to use 'new' and 'free' after every vector is read, right?21:05
@sonney2kf-x_, only after it has been released by the learner21:05
@sonney2knew[] and delete[]21:05
f-x_yes.. so i will have: fv=new float[size] or whatever each time a new vector is read? there isnt any problem with that, right? i'm worried about too much memory being used up, but delete[] should take care of it21:09
f-x_actually, this is good since now vector length need not be constant (as it was till now)21:10
@sonney2kf-x_, you could even do it withouth ever calling new[] delete[] while reading: just let the user specify that he wants say 20MB of buffer21:12
@sonney2kand then you read in until the buffer fills up21:12
@sonney2kthen wait until an example is released and read again21:12
f-x_one minute, have to refresh.. aarghh!!21:13
@sonney2kf-x_, but you will need to fread()'s one for the label and one for the data21:13
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f-xsonney2k: could you paste the last message please?21:17
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blackburnsonney2k: it's мучительно21:20
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blackburnsonney2k: Chris suggested me skype meetings -> I'm terrified :D21:25
@bettyboocool!!21:25
@sonney2kblackburn, why?21:25
blackburnsonney2k: you see my english when writing, my speaking is damn worse at factor of 1e621:26
blackburnwith my level of speaking I'd better write a report as poem than have some audience :)21:29
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CIA-90shogun: Soeren Sonnenburg master * rade1c3d / examples/undocumented/java_modular/minimal_test.java : minimal java example - http://bit.ly/dHFAmw21:33
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blackburnsonney2k: around?22:42
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--- Log closed Wed Apr 27 00:00:37 2011

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