| --- Log opened Mon Jul 29 00:00:12 2013 | ||
| --- Day changed Mon Jul 29 2013 | ||
| pickle27 | sonney2k: right, I don't see anything about RealFeatures in here though | 00:00 |
|---|---|---|
| @sonney2k | > library(modshogun) | 00:00 |
| @sonney2k | Welcome! This is SHOGUN version 2.2.0 | 00:00 |
| @sonney2k | > x=GaussianKernel() | 00:00 |
| @sonney2k | > x | 00:00 |
| @sonney2k | An object of class "_p_shogun__CGaussianKernel" | 00:00 |
| @sonney2k | Slot "ref": | 00:00 |
| @sonney2k | Error in slot(object, what) : | 00:00 |
| @sonney2k | no slot of name "ref" for this object of class "_p_shogun__CGaussianKernel" | 00:00 |
| pickle27 | just SGVector and SGMatrix | 00:00 |
| @sonney2k | the question is what is this ref slot | 00:00 |
| lisitsyn | sonney2k: I guess that's lispy name for method | 00:01 |
| lisitsyn | they follow some scheme-like thing inside R | 00:01 |
| @sonney2k | lisitsyn, for what? | 00:01 |
| lisitsyn | sonney2k: for ref() | 00:01 |
| lisitsyn | member function | 00:02 |
| lisitsyn | whatever | 00:02 |
| @sonney2k | what method do we need? | 00:02 |
| lisitsyn | sonney2k: I guess it tries to call ref() | 00:02 |
| @sonney2k | pickle27, ahh sure typemaps are just SGVector/SGMatrix stuff | 00:03 |
| @sonney2k | pickle27, so whenever you have a function signature | 00:03 |
| @sonney2k | foo(SGVector<double> x) | 00:03 |
| @sonney2k | you can write foo(c(1,2,3)) from R | 00:03 |
| @sonney2k | similar for output | 00:03 |
| @sonney2k | (in and out typemaps!) | 00:03 |
| @sonney2k | lisitsyn, IDK I tried some minimal R example where I used ref/unref and they *were* called | 00:04 |
| @sonney2k | no issues | 00:04 |
| lisitsyn | sonney2k: no I was just guessing so everything can happen | 00:04 |
| pickle27 | sonney2k: okay - so then where do I need to be looking for figuring out the RealFeatures problem | 00:05 |
| @sonney2k | lisitsyn, bah slotNames(x) | 00:12 |
| @sonney2k | [1] "ref" | 00:12 |
| @sonney2k | wtf? | 00:12 |
| @sonney2k | pickle27, well lets start with some simple example first | 00:12 |
| @sonney2k | x=RealLabels(c(1.0,2.2)) | 00:13 |
| @sonney2k | when this is called | 00:13 |
| @sonney2k | pickle27, go to line 36 in swig_typemaps.i | 00:13 |
| @sonney2k | you will see a typecheck typemap | 00:13 |
| @sonney2k | and a in typemap | 00:14 |
| @sonney2k | for SGVector types | 00:14 |
| pickle27 | yeah Im there | 00:14 |
| @sonney2k | the typecheck typemap well test if the type matches | 00:14 |
| @sonney2k | if it does it returns the equiv of true (1) otherwise 0 | 00:14 |
| @sonney2k | so my first guess is that this always returns 0 | 00:15 |
| @sonney2k | maybe add some SG_SPRINT there to see the result | 00:16 |
| @sonney2k | pickle27, if the typecheck typemap returns 1 | 00:16 |
| @sonney2k | the in typemap will be reached | 00:16 |
| @sonney2k | and that one then just has to assign an appropriate SGVector to $1 | 00:17 |
| @sonney2k | currently it doesn't copy the memory and so the simple example (if it would pass the typecheck typemap) woudl just crash | 00:17 |
| @sonney2k | since SGVector will at some point deallocate the memory when you exit R | 00:18 |
| @sonney2k | and R likely too | 00:18 |
| -!- votjakovr [~votjakovr@host-46-241-3-209.bbcustomer.zsttk.net] has left #shogun ["Fallen asleep!"] | 00:19 | |
| pickle27 | sonney2k: so bascially print the result of line 49 | 00:21 |
| @sonney2k | pickle27, questions? | 00:21 |
| pickle27 | i mean 40 | 00:21 |
| pickle27 | (TYPEOF($input) == r_type && Rf_ncols($input)==1 ) | 00:21 |
| @sonney2k | pickle27, I am just trying this with all fields | 00:21 |
| -!- travis-ci [~travis-ci@ec2-54-243-23-104.compute-1.amazonaws.com] has joined #shogun | 00:22 | |
| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9585748 | 00:22 |
| -!- travis-ci [~travis-ci@ec2-54-243-23-104.compute-1.amazonaws.com] has left #shogun [] | 00:22 | |
| @sonney2k | pickle27, but then the big issue is to figure out why refcounting doesn't work | 00:22 |
| @sonney2k | pickle27, I am not even getting towards the typecheck | 00:23 |
| @sonney2k | so one now would have to debug the generated R code | 00:24 |
| @sonney2k | pickle27, hmm | 00:25 |
| @sonney2k | if I do | 00:25 |
| @sonney2k | x=RegressionLabels() | 00:25 |
| @sonney2k | > x$set_labels(c(1.0,2.3)) | 00:25 |
| @sonney2k | > x$get_label(0) | 00:26 |
| @sonney2k | [1] 1 | 00:26 |
| @sonney2k | > x$get_label(1) | 00:26 |
| @sonney2k | [1] 2.3 | 00:26 |
| @sonney2k | it seems alright | 00:26 |
| @sonney2k | maybe it `just' doesn't work in the constructor style syntax | 00:26 |
| pickle27 | hmm | 00:27 |
| @sonney2k | yeah seems like | 00:28 |
| @sonney2k | with RealFeatures I get the (expected) crasher when I do | 00:28 |
| @sonney2k | > x=RealFeatures() | 00:28 |
| @sonney2k | > x$set_features(matrix(c(1,2,3,4,5,6),2,3)) | 00:28 |
| pickle27 | sonney2k: I get this when I run that | 00:31 |
| pickle27 | Error: evaluation nested too deeply: infinite recursion / options(expressions=)? | 00:31 |
| @sonney2k | pickle27, there are certainly more issues but maybe it is a start | 00:31 |
| * sonney2k Zzzzz. | 00:31 | |
| pickle27 | wierd this time I got a backtrace | 00:31 |
| pickle27 | ahg I hate when I accidently ctrl-l irc | 00:32 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has quit [Quit: Leaving] | 00:35 | |
| @iglesiasg | ok guys, good night! | 00:35 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has joined #shogun | 00:35 | |
| -!- iglesiasg [~Fernando@s83-179-44-135.cust.tele2.se] has quit [Quit: Leaving] | 00:35 | |
| @sonney2k | pickle27, memory corruption! | 00:43 |
| pickle27 | sonney2k: I ran it again and I couldn't get another backtrace | 00:43 |
| @sonney2k | pickle27, you can fix it easily be copying the memory before gving it sgvector/amtrix | 00:43 |
| pickle27 | but it did happen once | 00:43 |
| shogun-buildbot | build #1103 of cyg1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1103 blamelist: Soeren Sonnenburg <sonne@debian.org> | 00:48 |
| pickle27 | sonney2k: fix it in the typemap func? | 01:01 |
| shogun-buildbot | build #1420 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1420 blamelist: Soeren Sonnenburg <sonne@debian.org> | 01:11 |
| pickle27 | okay thats enough for me today, see you all tomorrow | 01:36 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has quit [Quit: Leaving] | 01:36 | |
| -!- nube [~rho@49.244.47.72] has joined #shogun | 02:37 | |
| -!- shogun-notifier- [~irker@7nn.de] has quit [Quit: transmission timeout] | 02:55 | |
| -!- nube [~rho@49.244.47.72] has quit [Quit: Leaving.] | 03:29 | |
| shogun-buildbot | build #472 of nightly_default is complete: Failure [failed test] Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_default/builds/472 | 04:12 |
| -!- nube [~rho@116.90.239.3] has joined #shogun | 05:25 | |
| -!- nube [~rho@116.90.239.3] has left #shogun [] | 05:28 | |
| -!- lisitsyn [~lisitsyn@92-240-133-94.clients.tlt.100megabit.ru] has quit [Quit: Leaving.] | 08:06 | |
| gsomix | good morning | 08:37 |
| -!- van51 [~van51@ppp-94-66-56-238.home.otenet.gr] has joined #shogun | 09:28 | |
| van51 | hello | 09:30 |
| -!- votjakovr [~votjakovr@host-46-241-3-209.bbcustomer.zsttk.net] has joined #shogun | 10:18 | |
| -!- iglesiasg [~Fernando@s83-179-44-135.cust.tele2.se] has joined #shogun | 10:19 | |
| -!- mode/#shogun [+o iglesiasg] by ChanServ | 10:19 | |
| @iglesiasg | good morning to all | 10:20 |
| van51 | iglesiasg: good morning :) | 10:22 |
| -!- van51 [~van51@ppp-94-66-56-238.home.otenet.gr] has quit [Quit: Leaving.] | 10:41 | |
| -!- van51 [~van51@94.66.56.238] has joined #shogun | 10:49 | |
| -!- vgorbati [c3ee5cb1@gateway/web/freenode/ip.195.238.92.177] has joined #shogun | 10:59 | |
| -!- lisitsyn [~lisitsin@mxs.kg.ru] has joined #shogun | 11:27 | |
| lisitsyn | vgorbati: hey haven't seen you for a while? | 11:28 |
| lisitsyn | how is it going? are you done with your thesis? | 11:28 |
| -!- gsomix_ [~gsomix@95.67.137.114] has joined #shogun | 11:50 | |
| -!- gsomix [~gsomix@109.169.249.121] has quit [Ping timeout: 264 seconds] | 11:53 | |
| vgorbati | lisitsyn: hello there) I basically rested all the time:) How is Berlin? | 12:01 |
| vgorbati | lisitsyn: do you mean master's thesis? | 12:02 |
| lisitsyn | vgorbati: berlin is nice indeed :) | 12:03 |
| lisitsyn | vgorbati: well some thesis you were working on | 12:03 |
| vgorbati | lisitsyn: I was working on monograph for my university supervisor (is it a correct word for it?), and yes, I believe it is done now:) | 12:05 |
| -!- foulwall [~user@116.114.141.87] has joined #shogun | 13:15 | |
| -!- van51 [~van51@94.66.56.238] has quit [Quit: Leaving.] | 13:37 | |
| -!- foulwall [~user@116.114.141.87] has quit [Ping timeout: 240 seconds] | 13:48 | |
| -!- gsomix_ [~gsomix@95.67.137.114] has quit [Quit: Leaving] | 14:24 | |
| -!- foulwall` [~user@116.114.141.87] has joined #shogun | 14:58 | |
| -!- iglesiasg [~Fernando@s83-179-44-135.cust.tele2.se] has quit [Ping timeout: 256 seconds] | 15:58 | |
| @wiking | mmmm | 16:33 |
| -!- iglesiasg [~Fernando@s83-179-44-135.cust.tele2.se] has joined #shogun | 16:43 | |
| -!- mode/#shogun [+o iglesiasg] by ChanServ | 16:43 | |
| -!- van51 [~van51@ppp-94-66-56-238.home.otenet.gr] has joined #shogun | 16:47 | |
| -!- foulwall` [~user@116.114.141.87] has quit [Ping timeout: 240 seconds] | 17:45 | |
| -!- foulwall` [~user@116.114.133.251] has joined #shogun | 17:46 | |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has joined #shogun | 17:54 | |
| -!- shogun-notifier- [~irker@7nn.de] has joined #shogun | 18:04 | |
| shogun-notifier- | shogun: Roman Votyakov :develop * c4b0bb6 / tests/unit/machine/gp/ (4 files): https://github.com/shogun-toolbox/shogun/commit/c4b0bb66f22d8895de7bf3a71554ad573c762ee2 | 18:04 |
| shogun-notifier- | shogun: add some unit-tests for likelihood models | 18:04 |
| shogun-notifier- | shogun: Roman Votyakov :develop * f8f1b75 / src/shogun/classifier/GaussianProcessBinaryClassification.cpp: https://github.com/shogun-toolbox/shogun/commit/f8f1b751b8e046d9bd9afe3b787abb8bb78763d0 | 18:04 |
| shogun-notifier- | shogun: replace eigen3 exp() call with shogun exp() call | 18:04 |
| shogun-notifier- | shogun: Heiko Strathmann :develop * b2727fc / / (5 files): https://github.com/shogun-toolbox/shogun/commit/b2727fc0b20e54d9b6ab6fb9ca556c759fa5b59c | 18:04 |
| shogun-notifier- | shogun: Merge pull request #1325 from votjakovr/feature/gp_refactoring | 18:04 |
| shogun-notifier- | shogun: | 18:04 |
| shogun-notifier- | shogun: Add some unit-tests for likelihood models | 18:04 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has quit [Quit: Leaving] | 18:07 | |
| shogun-buildbot | build #1104 of cyg1 - libshogun is complete: Failure [failed configure] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1104 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, Roman Votyakov <votjakovr@gmail.com> | 18:09 |
| @sonney2k | foulwall`, hey there - any news on the README? | 18:25 |
| foulwall` | Hey sonney2k, already finished, and now working on migration for tapkee demos. | 18:27 |
| -!- iglesiasg [~Fernando@s83-179-44-135.cust.tele2.se] has quit [Quit: Leaving] | 18:27 | |
| @sonney2k | foulwall`, please send a PR then | 18:27 |
| foulwall` | ok sonney2k | 18:28 |
| van51 | heh I thought that the ` after foulwall` was dust on my screen :p | 18:29 |
| @sonney2k | van51, heh! | 18:30 |
| @sonney2k | van51, so how is it going now? | 18:30 |
| van51 | sonney2k: well first of all, the CHashedDocDotFeatures and the converter have identical results | 18:31 |
| @sonney2k | van51, btw regarding benoits email - we already use bitmasks right? | 18:31 |
| van51 | sonney2k: in the doc features | 18:31 |
| @sonney2k | van51, excellent! | 18:31 |
| @sonney2k | van51, and speed? | 18:31 |
| van51 | sonney2k: in dense/sparse I had switched to just mod | 18:31 |
| van51 | sonney2k: for speed I'm not sure, it depends on the normalization | 18:32 |
| van51 | sonney2k: I mean unnormalized dot features take a lot time | 18:32 |
| @sonney2k | van51, well of course with same normalization | 18:32 |
| van51 | sonney2k: but the sparsefeatures returned from the converter are not normalized | 18:32 |
| @sonney2k | van51, oh you should add that to the converter too! | 18:33 |
| van51 | sonney2k: I tried but it would be the same normalziation. In the dot features we normalize the result, while there we create the entire vector so we would normalize each feature | 18:33 |
| van51 | wouldn't | 18:34 |
| van51 | dot product result* | 18:34 |
| @sonney2k | van51, parse error | 18:34 |
| van51 | sonney2k: heh | 18:34 |
| van51 | sonney2k: in the dot features we compute the dense dot for instance | 18:35 |
| van51 | sonney2k: and we normalize it | 18:35 |
| @sonney2k | van51, you jsut normalize each feature by dividing with 1/sqrt(count) | 18:35 |
| @sonney2k | van51, sure but in dotfeatures add_to_dense_vec you do the same normalization per feature | 18:36 |
| van51 | sonney2k: I tried it with 1/sqrt(doc.size()) and it was giving poor results | 18:37 |
| van51 | sonney2k: maybe I missed something | 18:37 |
| van51 | sonney2k: I can try it again though | 18:37 |
| van51 | sonney2k: btw I wanted to ask you about the CCommUlongKernel with svmLight that you had told me | 18:37 |
| van51 | sonney2k: I tried to compare their speed first, but when I used the kernel it segfaulted in a radix_sort method | 18:39 |
| van51 | sonney2k: I'm guessing it ran out of memory | 18:39 |
| @sonney2k | van51, maybe forgot that you need to use a double? | 18:40 |
| @sonney2k | van51, it should give the exact same results | 18:40 |
| @sonney2k | van51, hmmhh radix sort should work just fine (at least it did) | 18:41 |
| van51 | sonney2k: I'll reproduce it now | 18:43 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has joined #shogun | 18:45 | |
| shogun-buildbot | build #1421 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1421 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>, Roman Votyakov <votjakovr@gmail.com> | 18:46 |
| -!- travis-ci [~travis-ci@ec2-54-226-172-147.compute-1.amazonaws.com] has joined #shogun | 18:53 | |
| travis-ci | [travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9610363 | 18:53 |
| -!- travis-ci [~travis-ci@ec2-54-226-172-147.compute-1.amazonaws.com] has left #shogun [] | 18:53 | |
| -!- foulwall [~user@116.114.133.251] has joined #shogun | 18:53 | |
| @sonney2k | pickle27, yes | 18:55 |
| @sonney2k | pickle27, let me just add it | 18:55 |
| -!- foulwall [~user@116.114.133.251] has quit [Remote host closed the connection] | 18:56 | |
| -!- foulwall` [~user@116.114.133.251] has quit [Remote host closed the connection] | 18:56 | |
| -!- foulwall [~user@116.114.133.251] has joined #shogun | 18:56 | |
| van51 | sonney2k: this is my valgrind output | 18:56 |
| van51 | http://pastebin.com/wcT9rLpj | 18:56 |
| shogun-buildbot | build #1105 of cyg1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1105 blamelist: Roman Votyakov <votjakovr@gmail.com> | 18:58 |
| @sonney2k | van51, hmmhh looks like we broke it :/ | 19:01 |
| van51 | sonney2k: let me show you my code in case there is something wrong there | 19:01 |
| van51 | sonney2k: https://gist.github.com/van51/6105834 | 19:07 |
| -!- lisitsyn [~lisitsin@mxs.kg.ru] has quit [Quit: Leaving.] | 19:13 | |
| shogun-buildbot | build #1422 of deb3 - modular_interfaces is complete: Failure [failed install test python_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1422 blamelist: Roman Votyakov <votjakovr@gmail.com> | 19:21 |
| votjakovr | sonney2k: hi! i've found, that since doxygen 1.7.2 we can use MathJax instead of using prerendered bitmaps for rendering formulas. I think, that with MathJax formulas will be prettier. What do you think about using it? | 19:40 |
| @sonney2k | votjakovr, sure! | 19:56 |
| @sonney2k | votjakovr, that would speed up things too | 19:56 |
| @sonney2k | votjakovr, only issue is that it won't detect errors in the file - I mean if any of us screws up a formula | 19:58 |
| votjakovr | sonney2k: hmm, yep, unfortunately | 20:00 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * eccafc8 / src/ (4 files): https://github.com/shogun-toolbox/shogun/commit/eccafc84132f31fe5bb2e03372200482710f87a9 | 20:11 |
| shogun-notifier- | shogun: add get_copy function to lib/memory to be used from typemaps for clones | 20:11 |
| @sonney2k | pickle27, that fixes the crashers etc for me | 20:12 |
| @sonney2k | pickle27, I could do | 20:12 |
| @sonney2k | x=Regressionlabels() | 20:12 |
| @sonney2k | x$set_labels(c(1,2,3)) | 20:12 |
| @sonney2k | x$set_labels(c(1,2)) | 20:12 |
| @sonney2k | ... | 20:12 |
| @sonney2k | and also | 20:12 |
| @sonney2k | x=RealFeatures() | 20:13 |
| @sonney2k | x$set_feature_matrix(matrix(c(1,2,3,4,5,6),2,3)) | 20:13 |
| @sonney2k | votjakovr, btw looks like doxygen also supports markdown syntax nowadays | 20:18 |
| votjakovr | sonney2k: oh, yeah, i see | 20:20 |
| pickle27 | sonney2k: okay i will merge and see if it works for me soon | 20:21 |
| -!- iglesiasg [~iglesias@2001:6b0:1:1da0:9ce1:9054:335:9d36] has joined #shogun | 20:21 | |
| -!- mode/#shogun [+o iglesiasg] by ChanServ | 20:21 | |
| @iglesiasg | hello! | 20:22 |
| @sonney2k | iglesiasg, helllo! | 20:22 |
| -!- lisitsyn [~lisitsyn@213.87.133.71] has joined #shogun | 20:23 | |
| lisitsyn | kevin is a good boy today | 20:24 |
| lisitsyn | pickle27, ;) | 20:24 |
| @iglesiasg | lisitsyn, I will become a good boy soo, I promise :P | 20:24 |
| lisitsyn | van51, votjakovr | 20:24 |
| lisitsyn | haha | 20:25 |
| pickle27 | haha | 20:25 |
| lisitsyn | foulwall, hushell | 20:25 |
| lisitsyn | damn this phone typing is not so fast | 20:25 |
| @sonney2k | van51, is the normalization working in the converter now? | 20:26 |
| lisitsyn | iglesiasg, how is your marginal deals? | 20:27 |
| foulwall | Hi lisitsyn | 20:27 |
| lisitsyn | largely marginal | 20:27 |
| @iglesiasg | lisitsyn, LMNN? | 20:27 |
| lisitsyn | foulwall, hey I just called to say | 20:28 |
| lisitsyn | weekly report ;) | 20:28 |
| foulwall | ok lisitsyn :) | 20:28 |
| lisitsyn | iglesiasg: ja this one | 20:28 |
| lisitsyn | iglesiasg, is it better performance wise now? | 20:29 |
| @iglesiasg | lisitsyn, so so. My implementation currently sucks a bit compared to the author's (and it is in Matlab, although with some parts in C) | 20:29 |
| @iglesiasg | lisitsyn, no, not yet | 20:29 |
| @iglesiasg | lisitsyn, I realized I have to change a sort of big thing now | 20:29 |
| @iglesiasg | lisitsyn, well, not that big actually | 20:29 |
| @iglesiasg | lisitsyn, you are with phone now, right? | 20:29 |
| lisitsyn | iglesiasg: do you know the bottleneck? | 20:29 |
| @iglesiasg | otherwise I can show you | 20:30 |
| -!- foulwall` [~user@116.114.133.251] has joined #shogun | 20:30 | |
| lisitsyn | iglesiasg: ueah, i can read things though | 20:30 |
| lisitsyn | but not compile shogun | 20:30 |
| @iglesiasg | lisitsyn, haha indeed | 20:30 |
| @iglesiasg | let me show you then, on moment | 20:30 |
| -!- foulwall` [~user@116.114.133.251] has quit [Client Quit] | 20:30 | |
| @iglesiasg | one* | 20:30 |
| @iglesiasg | lisitsyn, https://github.com/iglesias/shogun/blob/feature/lmnn/src/shogun/metric/LMNNImpl.cpp#L135 | 20:31 |
| @iglesiasg | lisitsyn, so I have that method right now that is computing the difference between every pair of feature vectors, and then computing the outer product of the diff vector with itself | 20:32 |
| @sonney2k | foulwall, and where is the README PR ? | 20:32 |
| @iglesiasg | lisitsyn, right now that computes N^2 matrices of D^2 elements each one | 20:33 |
| @iglesiasg | lisitsyn, it is possible to make that smaller | 20:33 |
| foulwall | sonney2k: sending | 20:34 |
| @iglesiasg | lisitsyn, since (x_i-x_j)*(x_i-x_j)' is the same as (x_j-x_i)*(x_j-x_i)' | 20:34 |
| @iglesiasg | lisitsyn, but I think that even if I take that into account, it is still something too big to keep in memory (it will still be the order of N^2 matrices) | 20:35 |
| lisitsyn | iglesiasg: yeah quite big thing | 20:36 |
| @iglesiasg | lisitsyn, so I think that it is better to compute the outer products on demand; every time one is needed I compute it, even if that migh entail computing the same outer product more than once | 20:36 |
| @iglesiasg | lisitsyn, what do you think of doing it on demand? | 20:37 |
| @iglesiasg | lisitsyn, I think the author's implementation does it in this way | 20:37 |
| lisitsyn | iglesiasg, would be slower I guess but takes less memory | 20:37 |
| lisitsyn | if you dont have any N2 matrices more it totally makes sense | 20:38 |
| @iglesiasg | lisitsyn, then the bottleneck is this method https://github.com/iglesias/shogun/blob/feature/lmnn/src/shogun/metric/LMNNImpl.cpp#L316 | 20:38 |
| lisitsyn | are there any more N2 matrices? | 20:39 |
| @sonney2k | iglesiasg, sounds like kernel caching | 20:39 |
| @iglesiasg | sonney2k, yeah, I thought that caching could help | 20:39 |
| @iglesiasg | so I think that for the moment I will modify the code to compute outer products on demand, and later we can see if it pays off to have caching | 20:40 |
| @iglesiasg | lisitsyn, what do you mean if there are more N2 matrices? | 20:40 |
| lisitsyn | iglesiasg: I think caching makes sense here | 20:40 |
| lisitsyn | iglesiasg: if thats the only NxN matrix here | 20:41 |
| @iglesiasg | lisitsyn, aah ok got it. Yes it is | 20:41 |
| @iglesiasg | lisitsyn, but note that it is not only a NxN matrix | 20:41 |
| lisitsyn | then kill it yeah | 20:41 |
| @iglesiasg | lisitsyn, it is NxN matrices of DxD elements each (N=number of vectors, D=feature dimension) | 20:42 |
| lisitsyn | oh | 20:42 |
| lisitsyn | heh | 20:42 |
| @iglesiasg | because you compute the outer product of the difference of feature vectors | 20:43 |
| @iglesiasg | for each pair of feature vectors, you make its difference, and compute the outer product of the difference with itself | 20:43 |
| lisitsyn | yeah thats not something to be in memory | 20:43 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has joined #shogun | 20:44 | |
| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9615083 | 20:44 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has left #shogun [] | 20:44 | |
| lisitsyn | by outer product you mean dger from blas | 20:44 |
| lisitsyn | eight? | 20:44 |
| lisitsyn | right? | 20:44 |
| @iglesiasg | lisitsyn, no idea :D | 20:44 |
| lisitsyn | :D | 20:44 |
| @iglesiasg | lisitsyn, there are two ways you can multiply a vector with itself | 20:45 |
| lisitsyn | yeah heard sth | 20:45 |
| @iglesiasg | lisitsyn, inner product -> you get an scalar (something like x'*x) | 20:45 |
| lisitsyn | this one produces matrix | 20:45 |
| @iglesiasg | outer product -> you get a matrix (x*x') | 20:45 |
| @iglesiasg | exactly | 20:45 |
| lisitsyn | dger :p | 20:46 |
| @iglesiasg | lisitsyn, I am checking dger | 20:46 |
| lisitsyn | ddot and dger | 20:46 |
| @iglesiasg | lisitsyn, yeah it seems to be like that | 20:46 |
| @iglesiasg | lisitsyn, although they same in the doc that it is x*y' where x has m elements and n elements | 20:46 |
| lisitsyn | iglesiasg, eigen has symmetric rank update | 20:46 |
| lisitsyn | i used that thing in tapkees pca | 20:47 |
| @iglesiasg | lisitsyn, symmetric rank update? Do you think that could help me to make it faster? | 20:47 |
| @iglesiasg | lisitsyn, right now I get two eigen vectors, make their difference, and then the outer product | 20:47 |
| @iglesiasg | lisitsyn, https://github.com/iglesias/shogun/blob/feature/lmnn/src/shogun/metric/LMNNImpl.cpp#L154 | 20:48 |
| @iglesiasg | that line and the next one | 20:48 |
| lisitsyn | no probably wont help here | 20:48 |
| @iglesiasg | lisitsyn, aham. Why do you think so? | 20:49 |
| @iglesiasg | just trying to understand it better :) | 20:49 |
| lisitsyn | iirc that rank update is better for multiple calls | 20:49 |
| @iglesiasg | lisitsyn, I guess it is a matter of testing it anyway, so I will keep in mind that there is another way of getting the outer product | 20:50 |
| lisitsyn | iglesiasg: it employs symmetricity better somehow | 20:51 |
| -!- lisitsyn [~lisitsyn@213.87.133.71] has quit [Remote host closed the connection] | 20:52 | |
| -!- lisitsyn [~lisitsyn@213.87.133.71] has joined #shogun | 20:52 | |
| lisitsyn | oh I get disconnected once turning my phone off | 20:53 |
| -!- lisitsyn [~lisitsyn@213.87.133.71] has left #shogun [] | 20:57 | |
| shogun-buildbot | build #1106 of cyg1 - libshogun is complete: Failure [failed configure] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1106 blamelist: Soeren Sonnenburg <sonne@debian.org> | 21:03 |
| foulwall | ls | 21:05 |
| @iglesiasg | Documents Desktop Dropbox | 21:06 |
| @iglesiasg | foulwall, :P | 21:06 |
| foulwall | haha iglesiasg | 21:06 |
| @sonney2k | van51, minimalchange: https://gist.github.com/sonney2k/6106780 | 21:06 |
| pickle27 | hahaha I do that too | 21:06 |
| pickle27 | except I have this thing where I like to clear my terminals using ctrl-l all the time | 21:06 |
| van51 | sonney2k: hey sorry I was helping my grandmother with something | 21:06 |
| pickle27 | and then I clear IRC and its annoying | 21:06 |
| @iglesiasg | hehe | 21:07 |
| van51 | sonney2k: what did you change? | 21:07 |
| van51 | the 8-1? | 21:07 |
| @sonney2k | van51, yeah | 21:07 |
| @sonney2k | like in the python example | 21:07 |
| van51 | sonney2k: what is the meaning of start then? | 21:07 |
| @sonney2k | van51, where to start | 21:08 |
| van51 | sonney2k: :p | 21:08 |
| @sonney2k | van51, well this is doing some bitheavy stuff | 21:08 |
| @sonney2k | and basically it goes back 8 chars from the start so starting at index 7 is what you want to get 7...0 | 21:10 |
| van51 | sonney2k: ah I see | 21:11 |
| van51 | sonney2k: well I'm going to get some food and work on some stuff later and overnight | 21:11 |
| van51 | sonney2k: btw I've also started the document example | 21:11 |
| van51 | sonney2k: and I was thinking of making a simple web ui, just to be able to write some lines and test it | 21:12 |
| @sonney2k | van51, use the python_modular interface instead and some simple input or so and foulwall can later nicely integrate this | 21:13 |
| van51 | sonney2k: ok | 21:14 |
| van51 | sonney2k: so I'm off for about an hour | 21:15 |
| van51 | cu later | 21:15 |
| @sonney2k | van51, btw it might be good to do that for your example too. prototyping with python really is much faster (and debugging too!) | 21:17 |
| van51 | sonney2k: I don't know python so I'm trying to avoid it | 21:17 |
| van51 | sonney2k: but I guess it's a good time to get to know as well :0 | 21:18 |
| van51 | :)* | 21:18 |
| -!- van51 [~van51@ppp-94-66-56-238.home.otenet.gr] has quit [Quit: Leaving.] | 21:21 | |
| pickle27 | sonney2k: I tried the new R modular and I ran those samples you posted and they work for me | 21:23 |
| pickle27 | sonney2k: it still seams like none of the methods are "binding" though | 21:23 |
| pickle27 | whenever I try and use a method I get a not found error | 21:23 |
| @sonney2k | pickle27, that must be some swig issue - we have ton's of constructors | 21:23 |
| pickle27 | yeah | 21:23 |
| @sonney2k | so figuring out which one to use is the task of swig | 21:23 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * 95def24 / src/shogun/machine/gp/InferenceMethod.h: https://github.com/shogun-toolbox/shogun/commit/95def246a179d7a0065c85cd1252e2f6cae136ef | 21:26 |
| shogun-notifier- | shogun: fix typo in doxygen formula | 21:26 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * 3f113b7 / / (16 files): https://github.com/shogun-toolbox/shogun/commit/3f113b7a74d2a0ad54a9a484e93fca6ba9afde4f | 21:26 |
| shogun-notifier- | shogun: add some get_strdup function to avoid compile errors (strdup is not ansi C!) | 21:26 |
| @sonney2k | pickle27, back then I totally understood how that R stuff worked but I forgot | 21:26 |
| @sonney2k | pickle27, the only thing I remember is that from the R code there are some tests run selecting the appropriate constructor | 21:27 |
| pickle27 | sonney2k: and I have no idea how it works | 21:27 |
| pickle27 | it sounds like its pretty tough to fix - maybe I'll just push an r_static example for now | 21:28 |
| -!- hushell [~hushell@c-24-21-169-136.hsd1.or.comcast.net] has quit [Ping timeout: 276 seconds] | 21:29 | |
| -!- foulwall` [~user@116.114.133.251] has joined #shogun | 21:31 | |
| -!- foulwall [~user@116.114.133.251] has quit [Ping timeout: 246 seconds] | 21:32 | |
| -!- sonney2k [~shogun@7nn.de] has quit [Ping timeout: 246 seconds] | 21:33 | |
| -!- sonney2k_ [~shogun@7nn.de] has joined #shogun | 21:33 | |
| -!- sonney2k_ is now known as sonney2k | 21:34 | |
| -!- mode/#shogun [+o sonney2k] by ChanServ | 21:35 | |
| @sonney2k | pickle27, well you have to read swig code and the generated wrapper code modshogun.R etc | 21:35 |
| @sonney2k | not fun | 21:35 |
| pickle27 | sonney2k: doesn't sound like it! | 21:35 |
| @sonney2k | iglesiasg, any progress on the failing tests on the buildbot? | 21:36 |
| @iglesiasg | sonney2k, unfortunately not, sorry. I have focused on LMNN again since yesterday's eve | 21:36 |
| @sonney2k | foulwall`, ohh please don't put images in the repository | 21:38 |
| @sonney2k | foulwall`, please put them again under shogun-data/tapkee | 21:39 |
| foulwall` | ok sonney2k , I'll resend | 21:39 |
| @sonney2k | foulwall`, it might make sense to not have >1000 files too btw | 21:40 |
| @sonney2k | foulwall`, maybe better use a single .zip file with the images in there | 21:40 |
| @sonney2k | like faces.zip | 21:40 |
| @sonney2k | and mnist.zip | 21:40 |
| foulwall` | I see | 21:41 |
| @sonney2k | foulwall`, btw do you have a live demo already for that? | 21:41 |
| foulwall` | let me upload it on nn.7nn.de | 21:41 |
| foulwall` | sonney2k: check this, http://nn.7nn.de:8000/tapkee/entrance . | 21:46 |
| @sonney2k | foulwall`, nice! | 21:47 |
| shogun-buildbot | build #1107 of cyg1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1107 blamelist: Soeren Sonnenburg <sonne@debian.org> | 21:55 |
| shogun-buildbot | build #1108 of cyg1 - libshogun is complete: Failure [failed configure] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1108 blamelist: Soeren Sonnenburg <sonne@debian.org> | 22:01 |
| @iglesiasg | foulwall`, looking cool! | 22:01 |
| @iglesiasg | lisitsyn's gf will become worldwide famous eventually thanks to the faces embedding :) | 22:02 |
| @sonney2k | iglesiasg, yeah the new lena :) | 22:02 |
| @iglesiasg | sonney2k, haha yeah | 22:02 |
| @iglesiasg | sonney2k, have you actually seen the original of the Lena's picture? | 22:03 |
| foulwall` | haha :) iglesiasg, I've seen. | 22:03 |
| @iglesiasg | it is, let's say, not precisely the one they show in class or in college textbooks :P | 22:03 |
| foulwall` | sonney2k: thanks:D | 22:04 |
| @iglesiasg | Lena is Swedish btw :) | 22:04 |
| @iglesiasg | poeple are pretty proud in here when they use the picture in class | 22:04 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has joined #shogun | 22:11 | |
| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9618211 | 22:11 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has left #shogun [] | 22:11 | |
| -!- gsomix [~gsomix@95.67.137.114] has joined #shogun | 22:11 | |
| gsomix | good evening | 22:11 |
| gsomix | report time? :) | 22:11 |
| @sonney2k | gsomix, where is your PR? | 22:12 |
| gsomix | sonney2k, with quoting and libsvm reader? not ready yet, I need little time for it. | 22:14 |
| @sonney2k | gsomix, no the one that you submitted ~21hrs ago | 22:15 |
| @sonney2k | where I wanted some tiny changes | 22:15 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * a6f59dd / src/configure,src/shogun/io/Parser.cpp: https://github.com/shogun-toolbox/shogun/commit/a6f59dd8e159a0945b75eb2aca45c1e6a11e24b3 | 22:16 |
| shogun-notifier- | shogun: use strtod if strtold is not available | 22:16 |
| gsomix | sonney2k, ah, just a moment! | 22:16 |
| gsomix | sonney2k, forgot it. =___= today was little holiday, sorry. | 22:17 |
| gsomix | sonney2k, btw I haven't any warnings related to format on my machine. | 22:17 |
| @sonney2k | gsomix, I need to merge yours before I can start to convert examples | 22:17 |
| @sonney2k | gsomix, yeah sure 32bit vs 64bit | 22:17 |
| @sonney2k | gsomix, so use the 'standard' ones and we will be fine | 22:18 |
| gsomix | sonney2k, aha, indeed. | 22:18 |
| gsomix | sonney2k, btw, can I help with examples& | 22:18 |
| gsomix | *? | 22:18 |
| @sonney2k | iglesiasg, wiking, votjakovr, pickle27 anyone here up to doing a doc sprint at google in october? | 22:19 |
| @iglesiasg | sonney2k, sure! | 22:19 |
| @sonney2k | gsomix, well sure but we are quite a bit behind schedule :/ | 22:19 |
| pickle27 | probably no for me because I'm hoping to be doing some travelling in Oct | 22:20 |
| @sonney2k | it is during oct14-18 http://www.booksprints.net/2013/07/2013-doc-camp-announced/ | 22:20 |
| @iglesiasg | sonney2k, what should we do to raise our odds of getting in? | 22:21 |
| @sonney2k | iglesiasg, IDK | 22:21 |
| @sonney2k | we certainly need 4 people that can do a stunt | 22:22 |
| pickle27 | sonney2k: looks very cool though, I'd be happy to help I just won | 22:22 |
| @iglesiasg | sonney2k, would you be in? | 22:22 |
| pickle27 | 't be able to be there | 22:22 |
| @sonney2k | iglesiasg, HeikoS, me + ?? | 22:22 |
| @iglesiasg | let's see if wiking and lisitsyn could make it | 22:22 |
| @sonney2k | I am not sure I would go ipython-notebook for that | 22:23 |
| -!- hushell [~hushell@8-92.ptpg.oregonstate.edu] has joined #shogun | 22:23 | |
| @iglesiasg | sonney2k, mmm I don't see why not | 22:23 |
| @sonney2k | iglesiasg, they aim for a real book | 22:24 |
| @iglesiasg | sonney2k, people are doing real books these days based on ipython I think | 22:24 |
| @sonney2k | copy & pasting parts from people's thesis would not be that easy then | 22:25 |
| @iglesiasg | sonney2k, lol | 22:25 |
| @sonney2k | iglesiasg, I think that is our only chance to *finish* a book in 4 days | 22:25 |
| @sonney2k | that is what they aim fo | 22:25 |
| @sonney2k | are | 22:25 |
| @sonney2k | iglesiasg, look at this http://www.booksprints.net/about/ | 22:26 |
| @iglesiasg | sonney2k, check thhis one: http://camdavidsonpilon.github.io/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers/ | 22:26 |
| @iglesiasg | sonney2k, http://nbviewer.ipython.org/urls/raw.github.com/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers/master/Chapter1_Introduction/Chapter1_Introduction.ipynb | 22:26 |
| @iglesiasg | chapter 1 ^ | 22:27 |
| @iglesiasg | to me that looks like a nice real book | 22:27 |
| @iglesiasg | sonney2k, what do you think? | 22:28 |
| @sonney2k | iglesiasg, looks *very* cool | 22:29 |
| @iglesiasg | indeed, we agree :) | 22:29 |
| @sonney2k | iglesiasg, can this be converted to some epub /pdf etc? | 22:30 |
| @sonney2k | or is it 'just' web? | 22:30 |
| @iglesiasg | sonney2k, no idea, honestly | 22:30 |
| -!- van51 [~van51@ppp-94-66-56-238.home.otenet.gr] has joined #shogun | 22:30 | |
| @iglesiasg | let me have a quick look | 22:30 |
| @sonney2k | van51, hey again | 22:31 |
| van51 | sonney2k: hi | 22:31 |
| @iglesiasg | they say so in the page, no idea how it looks like, let's see | 22:31 |
| @sonney2k | iglesiasg, ok then it is pretty clear how to increase our chances - we should have some ideas what our target audience is, structure, running examples and methods we want to use | 22:32 |
| @sonney2k | iglesiasg, but issue still remains that we are just a very small org (compared to e.g. KDE) | 22:32 |
| @iglesiasg | sonney2k, when is the deadline? | 22:32 |
| @sonney2k | iglesiasg, in 3 days | 22:32 |
| @iglesiasg | sonney2k, I am thinking, if it is after GSoC ends | 22:32 |
| @iglesiasg | shit... | 22:32 |
| @sonney2k | or 5? | 22:32 |
| @sonney2k | iglesiasg, last year it was like this | 22:32 |
| @iglesiasg | I drop the idea then | 22:33 |
| @sonney2k | before august 7! | 22:33 |
| @sonney2k | if heiko is not around for discussion yeah then indeed | 22:33 |
| @iglesiasg | sonney2k, https://dl.dropboxusercontent.com/u/11020840/June82013.pdf | 22:34 |
| @iglesiasg | sonney2k, pdf version of the book | 22:34 |
| @iglesiasg | sonney2k, IMHO it looks nicer in the browser, but it is still cool I think | 22:34 |
| @sonney2k | iglesiasg, I think we have a chance this year | 22:35 |
| @sonney2k | iglesiasg, jsut because big data etc is such a big hype | 22:35 |
| gsomix | sonney2k, compiling... | 22:35 |
| @sonney2k | so we should try! | 22:35 |
| @iglesiasg | sonney2k, yep! | 22:35 |
| @sonney2k | iglesiasg, very nice still!!! | 22:36 |
| @iglesiasg | so I vote sticking to ipython-notebook :) | 22:36 |
| shogun-buildbot | build #1424 of deb3 - modular_interfaces is complete: Failure [failed compile octave_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1424 blamelist: Soeren Sonnenburg <sonne@debian.org> | 22:42 |
| @sonney2k | iglesiasg, sure then we just have to figure out how to integrate big chunks of latex | 22:44 |
| -!- zxtx [~zv@cpe-75-83-151-252.socal.res.rr.com] has quit [Ping timeout: 268 seconds] | 22:45 | |
| @iglesiasg | sonney2k, yes | 22:45 |
| @sonney2k | iglesiasg, no idea whether stuff like toc / index / references are possible | 22:47 |
| gsomix | sonney2k, testing... | 22:49 |
| -!- votjakovr [~votjakovr@host-46-241-3-209.bbcustomer.zsttk.net] has left #shogun ["Fallen asleep!"] | 22:49 | |
| @sonney2k | shogun-buildbot, force build 'cyg1 - libshogun' --branch=develop | 22:51 |
| shogun-buildbot | build forced [ETA 17m23s] | 22:51 |
| shogun-buildbot | I'll give a shout when the build finishes | 22:51 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * e6788a0 / src/interfaces/ (2 files): https://github.com/shogun-toolbox/shogun/commit/e6788a07fdb6845a38f92bc55489e80f1c33f7c1 | 22:53 |
| shogun-notifier- | shogun: drop get_copy from octave and perl | 22:53 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has joined #shogun | 22:54 | |
| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9620302 | 22:54 |
| -!- travis-ci [~travis-ci@ec2-72-44-42-216.compute-1.amazonaws.com] has left #shogun [] | 22:54 | |
| gsomix | sonney2k, done. https://github.com/shogun-toolbox/shogun/pull/1323 | 22:59 |
| gsomix | compiling takes many time | 22:59 |
| shogun-notifier- | shogun: Evgeniy Andreev :develop * 5798840 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/5798840ae3254defe789403e3eac001cc665be31 | 23:01 |
| shogun-notifier- | shogun: fixed invalid read in Parser, CSVFile constructor is shortened | 23:01 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * f0ccda8 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/f0ccda88694ea364c7e1b021c7dc2256648b001b | 23:01 |
| shogun-notifier- | shogun: Merge pull request #1323 from gsomix/feature/parser | 23:01 |
| shogun-notifier- | shogun: | 23:01 |
| shogun-notifier- | shogun: Fixed invalid read in Parser, CSVFile constructor is shortened | 23:01 |
| gsomix | sonney2k, so what to do with examples? | 23:02 |
| -!- pickle27 [~Kevin@d67-193-243-174.home3.cgocable.net] has quit [Quit: Leaving] | 23:02 | |
| @sonney2k | gsomix, maybe we should talk how to continue in general? | 23:02 |
| @sonney2k | gsomix, it would be nice to have the other ascii formats working | 23:03 |
| gsomix | sonney2k, yep. | 23:03 |
| @sonney2k | gsomix, and the stringfeatures/sparsefeatures/densefeatures/matrixfeatures etc cleaned up / supported | 23:03 |
| gsomix | sonney2k, so I'm working on libsvm file format now. | 23:03 |
| @sonney2k | I mean this is the first and most important thing to finish | 23:04 |
| @sonney2k | gsomix, sounds like I should rather convert the examples | 23:04 |
| @sonney2k | while you continue your work | 23:04 |
| @sonney2k | gsomix, afterwards I would like us to have some binary format based on protobuf and well there still is reading / writing matlab files | 23:05 |
| @sonney2k | which likely is most important for users | 23:05 |
| shogun-buildbot | build #1109 of cyg1 - libshogun is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1109 | 23:06 |
| gsomix | sonney2k, aha | 23:06 |
| @sonney2k | gsomix, but seriously I think most people will just use ascii and matlab format | 23:07 |
| gsomix | sonney2k, other ascii formats. which? | 23:07 |
| @iglesiasg | matlab format please! | 23:07 |
| @iglesiasg | gsomix, when are we getting this? Really looking forward to it | 23:08 |
| gsomix | sonney2k, matlab7 file format is last version, right? | 23:09 |
| @sonney2k | gsomix, arff then van51 would say vw | 23:09 |
| @sonney2k | gsomix, no | 23:10 |
| @sonney2k | gsomix, matlab has a couple of formats | 23:10 |
| gsomix | sonney2k, not compatible? | 23:10 |
| @sonney2k | gsomix, as I wrote on the ideas page octave supports reading IIRC up to 7.2 | 23:10 |
| @sonney2k | afterwards they switched to sth hdf5 based | 23:10 |
| @sonney2k | so you it would take some time | 23:11 |
| @sonney2k | to do this | 23:11 |
| gsomix | sonney2k, I should look into octave source? or there is specs on 7.2? | 23:11 |
| gsomix | I found only 7.0.1 | 23:11 |
| @sonney2k | gsomix, http://www.mathworks.com/help/pdf_doc/matlab/matfile_format.pdf | 23:12 |
| gsomix | sonney2k, huh! I never imagined that I could find it on mathworks site. | 23:14 |
| gsomix | I mean MATLAB very closed and have not many docs about how it works inside. | 23:15 |
| gsomix | *is very | 23:15 |
| @sonney2k | gsomix, it seems not to be the latest format for sure | 23:15 |
| shogun-buildbot | build #1110 of cyg1 - libshogun is complete: Failure [failed compile] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1110 blamelist: Soeren Sonnenburg <sonne@debian.org> | 23:15 |
| @sonney2k | gsomix, maybe you can use octave's reader somehow | 23:16 |
| @sonney2k | gsomix, only issue is we cannot test this | 23:16 |
| @sonney2k | we have no matlab | 23:16 |
| @sonney2k | so maybe we just get some .mat file from sb. | 23:16 |
| @sonney2k | and also the ascii representation or sth | 23:16 |
| @sonney2k | and then you can read/compare | 23:16 |
| gsomix | sonney2k, ok, I can test it on my local machine. | 23:17 |
| gsomix | and I can make .mat with ascii representation too | 23:17 |
| gsomix | I have licensed matlab 2013a at lab. | 23:18 |
| gsomix | sonney2k, I'm not full clear with protobuf now. | 23:19 |
| gsomix | sonney2k, we plan to develop our file format based on protobuf? or so? | 23:20 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * 5733a65 / src/shogun/mathematics/Math.h: https://github.com/shogun-toolbox/shogun/commit/5733a65137c48909c95272fbbc6df57af5a1bb67 | 23:21 |
| shogun-notifier- | shogun: define _USE_MATH_DEFINES to get non-standard constant M_PI | 23:21 |
| @sonney2k | gsomix, yes it is basically just a binary format / fast & size efficient to store values | 23:23 |
| @iglesiasg | have you guys started doing the mid-term evaluation? | 23:23 |
| * sonney2k gets hungry | 23:24 | |
| * sonney2k off -> food | 23:24 | |
| gsomix | iglesiasg, nope. I have many work that I promised to finish before midterm. | 23:24 |
| @iglesiasg | gsomix, you will make on time! :) | 23:25 |
| shogun-buildbot | build #1423 of deb3 - modular_interfaces is complete: Failure [failed compile octave_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1423 blamelist: Soeren Sonnenburg <sonne@debian.org> | 23:25 |
| @sonney2k | shogun-buildbot, force build 'cyg1 - libshogun' --branch=develop | 23:28 |
| shogun-buildbot | build forced [ETA 16m24s] | 23:28 |
| shogun-buildbot | I'll give a shout when the build finishes | 23:28 |
| shogun-buildbot | build #1111 of cyg1 - libshogun is complete: Failure [failed configure] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1111 | 23:28 |
| @sonney2k | shogun-buildbot, force build 'cyg1 - libshogun' --branch=develop | 23:29 |
| shogun-buildbot | build forced [ETA 16m24s] | 23:29 |
| shogun-buildbot | I'll give a shout when the build finishes | 23:29 |
| shogun-buildbot | build #1112 of cyg1 - libshogun is complete: Failure [failed configure] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1112 | 23:30 |
| @sonney2k | shogun-buildbot, force build 'cyg1 - libshogun' --branch=develop | 23:31 |
| shogun-buildbot | build forced [ETA 16m24s] | 23:31 |
| shogun-buildbot | I'll give a shout when the build finishes | 23:31 |
| -!- travis-ci [~travis-ci@ec2-54-226-172-147.compute-1.amazonaws.com] has joined #shogun | 23:36 | |
| travis-ci | [travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/9621665 | 23:36 |
| -!- travis-ci [~travis-ci@ec2-54-226-172-147.compute-1.amazonaws.com] has left #shogun [] | 23:36 | |
| @sonney2k | iglesiasg, I guess failing unit tests will be the only thing to show why matrixlist is unhappy | 23:38 |
| @iglesiasg | sonney2k, yeah, maybe. But valgrinds seems to complain about stuff going on when unref-ing | 23:39 |
| @sonney2k | iglesiasg, yeah exactly | 23:40 |
| shogun-buildbot | build #1425 of deb3 - modular_interfaces is complete: Failure [failed test python_modular] Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/1425 blamelist: Soeren Sonnenburg <sonne@debian.org> | 23:41 |
| @iglesiasg | sonney2k, that confuses me though | 23:41 |
| @sonney2k | iglesiasg, why? | 23:41 |
| @iglesiasg | sonney2k, where can the bug be if the error arises in the destructor or when un-referencing? | 23:41 |
| @sonney2k | some kind of double free | 23:41 |
| shogun-buildbot | build #1113 of cyg1 - libshogun is complete: Success [build successful] Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/1113 | 23:47 |
| @iglesiasg | evalution submitted | 23:49 |
| --- Log closed Tue Jul 30 00:00:53 2013 | ||
Generated by irclog2html.py 2.10.0 by Marius Gedminas - find it at mg.pov.lt!