| --- Log opened Thu Sep 26 00:00:15 2013 | ||
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| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * d06ef61 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/d06ef617d94bfcbceb65ce527e7cdbab8f03631b | 02:56 |
|---|---|---|
| shogun-notifier- | shogun: initial draft for gp notebook | 02:56 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 0c672b6 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/0c672b66d632eeae8a4de95ef33d40c061d14471 | 02:56 |
| shogun-notifier- | shogun: some updates on binary classification | 02:56 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * dc26fe3 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/dc26fe318341c93dcf8bf8e165833e84cbc84fce | 02:56 |
| shogun-notifier- | shogun: some more updates for likelihoods | 02:56 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * f6f1d39 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/f6f1d394db930309cbcf2119467406573ec72edf | 02:56 |
| shogun-notifier- | shogun: another paragraph on inference for binary classification | 02:56 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 13a5970 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/13a597067a893e8c70c267de713e95f05d43b4ba | 02:56 |
| shogun-notifier- | shogun: some updates on inference and model-selection | 02:56 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * c3436ff / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/c3436ff2bb8d9021c22f8717652f25311b510e06 | 02:56 |
| shogun-notifier- | shogun: some more things on model-selection with ML2 | 02:56 |
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| shogun-buildbot | build #467 of nightly_all is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_all/builds/467 | 03:32 |
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| travis-ci | [travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/11805124 | 04:03 |
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| sonne|work | lisitsyn: around? | 09:23 |
| wiking | mmm when's the meeting then? | 09:24 |
| sonne|work | wiking: ?! | 09:26 |
| sonne|work | wiking: are we having any today even? | 09:26 |
| wiking | sonne|work: dunno | 09:26 |
| wiking | i've just filled out the doodle :P | 09:26 |
| sonne|work | wiking: man I don't even know the doodle lik | 09:26 |
| sonne|work | link | 09:26 |
| wiking | hehehe funny | 09:27 |
| wiking | anyhow i'll cleanup the ipynbs now | 09:27 |
| wiking | and try to fix protoc | 09:27 |
| sonne|work | wiking: btw lisitsyn wrote the gdb test run when sth fails but he had to comment it again | 09:27 |
| wiking | where's the PR? | 09:27 |
| wiking | or is there a pr? | 09:27 |
| sonne|work | wiking: merged | 09:27 |
| sonne|work | wiking: let me show you the lines | 09:27 |
| wiking | ok cool | 09:27 |
| sonne|work | I tried to debug it but didn't succeed yet | 09:28 |
| wiking | brb i just gonna take my breaky now :P | 09:28 |
| sonne|work | :P | 09:28 |
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| shogun-notifier- | shogun: Viktor Gal :develop * 5f48173 / doc/ipython-notebooks/classification/svm_binary_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/5f481731af8a2fb05fac0456ab19804e3462ed80 | 09:41 |
| shogun-notifier- | shogun: fix issue #1611 | 09:41 |
| shogun-notifier- | shogun: cleanup svm_binary_classification.ipynb | 09:41 |
| wiking | sonne|work: so what's the gdb line? | 09:41 |
| wiking | sonne|work: good news: http://googlemock.googlecode.com/files/gmock-1.7.0.zip | 09:49 |
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| shogun-buildbot | build #1547 of cyg1 - libshogun is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/cyg1%20-%20libshogun/builds/1547 blamelist: Viktor Gal <viktor.gal@maeth.com> | 10:30 |
| sonne|work | wiking: hurray! | 10:34 |
| sonne|work | wiking: ah sry got distracted | 10:34 |
| sonne|work | wiking: check cmake/checkgdb.cmake | 10:35 |
| sonne|work | wiking: this is called from tests/integration/python_modular/CMakeLists.txt | 10:36 |
| sonne|work | wiking: it seems gdb is run on each example when this is activated | 10:36 |
| sonne|work | no idea if the return code check is correct | 10:36 |
| sonne|work | wiking: but I need this for libshogun examples / unit tests | 10:37 |
| sonne|work | otherwise debugging cyg1 failures is too tough | 10:37 |
| wiking | ok i'll check | 10:39 |
| shogun-notifier- | shogun: Viktor Gal :develop * 8e7b259 / cmake/external/GoogleTestNMock.cmake: https://github.com/shogun-toolbox/shogun/commit/8e7b2597e932a4e1ada6c945562ffd7d735b8fd0 | 10:43 |
| shogun-notifier- | shogun: Dump gmock version to 1.7.0 | 10:43 |
| sonne|work | wiking: so w/ gmock we can drop the shitty svn dependency right? | 10:44 |
| sonne|work | wiking: ahh btw I got the green light from json-c people that they would accept a patch for the nan / inf issue | 10:44 |
| wiking | ? | 10:44 |
| sonne|work | wiking: well for gmock? | 10:44 |
| wiking | it's done | 10:44 |
| wiking | see my last commit | 10:44 |
| sonne|work | wiking: didn't we have to svn checkout before | 10:44 |
| sonne|work | wiking: yes exactly | 10:44 |
| wiking | sonne|work: u didn't need to do anything... | 10:45 |
| wiking | it was automatic | 10:45 |
| wiking | but now it doesn't use svn | 10:45 |
| wiking | but the zip | 10:45 |
| sonne|work | yeah exactly | 10:45 |
| wiking | but u never needed to svn checkout manually | 10:45 |
| sonne|work | it is great | 10:45 |
| wiking | let's see what the bots say | 10:45 |
| sonne|work | well we needed svn installed | 10:45 |
| wiking | yes for test | 10:45 |
| sonne|work | but now no longer which is like ... great! | 10:46 |
| wiking | but whoever did utest that it was highly likely that they had svn | 10:46 |
| wiking | as svn is not dead... yet | 10:46 |
| wiking | there's a problem with hdf5 + floatmax... | 10:46 |
| sonne|work | no way to save it | 10:46 |
| wiking | then we should just disable it i thnk | 10:46 |
| sonne|work | it should just err or save as double | 10:47 |
| sonne|work | disable what? | 10:47 |
| wiking | H5T_NATIVE_LDOUBLE | 10:47 |
| sonne|work | ahh cool | 10:47 |
| wiking | Serialization.Hdf5_scalar_equal_FLOATMAX | 10:47 |
| sonne|work | then | 10:47 |
| wiking | but still this sucks | 10:47 |
| sonne|work | what sucks? | 10:47 |
| wiking | http://pastebin.com/NkVuAdYf | 10:48 |
| wiking | and xml is even worse http://pastebin.com/5JUhE5js | 10:53 |
| sonne|work | wiking: lzma auto decoder?! | 11:38 |
| wiking | dunno | 11:40 |
| wiking | this is what i get from valgrind | 11:40 |
| sonne|work | wiking: looks very much like a bug in libxml | 11:43 |
| sonne|work | wiking: but lbxml2_xzread ?!? | 11:43 |
| sonne|work | we don't even use compression... looks like libxml2 supports this now | 11:43 |
| wiking | yeah | 11:44 |
| wiking | but still it's loaded by libxml2 | 11:44 |
| wiking | it seems | 11:44 |
| shogun-buildbot | build #1548 of cyg1 - libshogun is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/cyg1%20-%20libshogun/builds/1548 blamelist: Viktor Gal <viktor.gal@maeth.com> | 11:44 |
| sonne|work | wiking: yeah maybe it needs to call some kind of cleanup | 11:47 |
| sonne|work | once done | 11:47 |
| sonne|work | but doesn't | 11:47 |
| sonne|work | or we need to... | 11:47 |
| sonne|work | no idea | 11:47 |
| wiking | yeah the funny thing is that xmlcleanup is being called | 11:52 |
| wiking | but i'll try to figure it out | 11:52 |
| shogun-buildbot | build #47 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/47 blamelist: Viktor Gal <viktor.gal@maeth.com> | 11:56 |
| wiking | sonne|work: it's funny if i run the Serialization.Xml* test 1-by-1 then i only get | 12:07 |
| wiking | LEAK SUMMARY: | 12:07 |
| wiking | ==12264== definitely lost: 0 bytes in 0 blocks | 12:07 |
| wiking | ==12264== indirectly lost: 0 bytes in 0 blocks | 12:07 |
| wiking | ==12264== possibly lost: 0 bytes in 0 blocks | 12:07 |
| wiking | ==12264== still reachable: 76 bytes in 2 blocks | 12:07 |
| wiking | ==12264== suppressed: 0 bytes in 0 blocks | 12:07 |
| wiking | but if i run the Serialization.Xml* at once i get that leak | 12:07 |
| wiking | it might be some xml/valgrind bug | 12:08 |
| shogun-buildbot | build #30 of clang34 - undefined behaviour analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/30 blamelist: Viktor Gal <viktor.gal@maeth.com> | 12:08 |
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| wiking | ok somebody even created a supression file for this | 12:09 |
| wiking | https://github.com/kitanda/hedgr/blob/master/build/valgrind/hedgr.supp | 12:09 |
| lisitsyn1 | sonne|work: it looks we need to postpone meeting to next week | 12:09 |
| lisitsyn1 | thoralf and heiko are out so | 12:10 |
| wiking | so i guess it's really some false positive error... | 12:10 |
| wiking | sonne|work: actually what happened with that valgrind supression file that thoralf created? | 12:10 |
| wiking | ok so release only next week then i guess? | 12:11 |
| wiking | it sounds better as we still need some more time | 12:11 |
| lisitsyn1 | wiking: deffs not this week | 12:11 |
| wiking | sonne|work: we need to change a bit how the notebooks are generated | 12:11 |
| wiking | sonne|work: as some of the notebooks use data | 12:12 |
| wiking | sonne|work: and if they are not present then the notebook is basically useless | 12:12 |
| wiking | i'll put this into issue | 12:12 |
| wiking | mmm | 12:16 |
| wiking | btw doc/Doxyfile should not be in repo, or? | 12:16 |
| wiking | i mean because of the version number etc... | 12:17 |
| wiking | it should be generated with make doc | 12:17 |
| wiking | mmm maaaaybe we should port as well the doxygen doc generation to cmake :P | 12:23 |
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| travis-ci | [travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/11812851 | 12:23 |
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| shogun-buildbot | build #33 of clang34 - thread analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/33 blamelist: Viktor Gal <viktor.gal@maeth.com> | 12:26 |
| shogun-notifier- | shogun: Viktor Gal :develop * 28c40c6 / doc/Doxyfile_cn.in,doc/Doxyfile_en.in,tests/unit/io/Serialization_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/28c40c686005327f0a013c4c3adb23ccab78bf75 | 12:33 |
| shogun-notifier- | shogun: Fix typo in Serialization_unittest.cc | 12:33 |
| shogun-notifier- | shogun: fix issue #1677: use mathjax in doxygen for displaying mathematical formulas | 12:33 |
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| shogun-buildbot | build #48 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/48 blamelist: Viktor Gal <viktor.gal@maeth.com> | 13:25 |
| shogun-buildbot | build #39 of debian wheezy - memcheck is complete: Failure [failed memory check] Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/39 blamelist: Viktor Gal <viktor.gal@maeth.com> | 13:31 |
| shogun-buildbot | build #31 of clang34 - undefined behaviour analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/31 blamelist: Viktor Gal <viktor.gal@maeth.com> | 13:37 |
| shogun-buildbot | build #1549 of cyg1 - libshogun is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/cyg1%20-%20libshogun/builds/1549 blamelist: Viktor Gal <viktor.gal@maeth.com> | 13:37 |
| sonne|work | wiking: why should the data not be present? | 13:49 |
| sonne|work | wiking: it should always be there | 13:49 |
| sonne|work | wiking: the Doxyfile had a .in file | 13:50 |
| sonne|work | is it gone? | 13:50 |
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| shogun-buildbot | build #34 of clang34 - thread analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/34 blamelist: Viktor Gal <viktor.gal@maeth.com> | 13:51 |
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| wiking | sonne|work: nono it's fixed already | 14:18 |
| wiking | sonne|work: no i dont know... but the generated html file is broken for sure | 14:18 |
| wiking | i'm gonna check now the ipynb | 14:18 |
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| wiking | sonne|work: yeah no... something is wrong with the generated ipynb | 14:19 |
| wiking | sonne|work: the wav files are missing from that ipynb: http://nbviewer.ipython.org/url/www.shogun-toolbox.org/static/notebook/bss_jade.ipynb | 14:20 |
| wiking | sonne|work: i.e. something went wrong with reading from data... | 14:20 |
| shogun-buildbot | build #40 of debian wheezy - memcheck is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/40 | 14:22 |
| sonne|work | wiking: maybe some python package is missing or it needs a newer scipy or so? | 14:23 |
| wiking | sonne|work: no idea... r u logging the ipynb generator somewhere? | 14:26 |
| sonne|work | wiking: sure just look at the buildbot output | 14:30 |
| wiking | sonne|work: | 14:33 |
| wiking | # change to the shogun-data directoy | 14:33 |
| wiking | import os | 14:33 |
| wiking | os.chdir('../../../data/ica') | 14:33 |
| wiking | Failed to run cell: | 14:33 |
| wiking | Traceback (most recent call last): | 14:33 |
| wiking | File "/usr/local/bin/ipynb_run_save.py", line 107, in test_notebook | 14:33 |
| wiking | outs = run_cell(kc, cell) | 14:33 |
| wiking | File "/usr/local/bin/ipynb_run_save.py", line 72, in run_cell | 14:33 |
| wiking | raise Exception(out.traceback) | 14:33 |
| wiking | Exception: ['\x1b[1;31m---------------------------------------------------------------------------\x1b[0m\n\x1b[1;31mOSError\x1b[0m Traceback (most recent call last)', "\x1b[1;32m<ipython-input-4-eaf8f3665f21>\x1b[0m in \x1b[0;36m<module>\x1b[1;34m()\x1b[0m\n\x1b[0;32m 1\x1b[0m \x1b[1;31m# change to the shogun-data directoy\x1b[0m\x1b[1;33m\x1b[0m\x1b[1;33m\x1b[0m\x1b[0m\n\x1b[0;32m 2\x1b[0m \x1b[1;32mimport\x1b[0m \x1 | 14:33 |
| wiking | there | 14:33 |
| wiking | ;) | 14:33 |
| wiking | i wonder why that does not return 1 but 0 | 14:34 |
| wiking | hence it's marked as green, i.e. it ran fine... | 14:34 |
| wiking | which is actually not the case if u look at the stdio: http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/536/steps/notebooks/logs/stdio | 14:34 |
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| wiking | besser82: here? | 14:48 |
| besser82 | wiking: sure! | 14:48 |
| besser82 | wiking: What's the beef? | 14:49 |
| wiking | besser82: CTEST_MEMORYCHECK_SUPPRESSIONS_FILE | 14:49 |
| besser82 | wiking: What precisely? | 14:50 |
| wiking | can i set this from CMakeLists.txt? | 14:50 |
| wiking | i mean apparently not | 14:51 |
| besser82 | wiking: What do you want to do exacly? can you be a bit more verbose, please? | 14:51 |
| wiking | besser82: i want to set the valgrind suppression file for cmake | 14:52 |
| wiking | i mean ctest | 14:52 |
| wiking | i.e. when u run: ctest -D ExperimentalMemCheck | 14:53 |
| wiking | then it'll add the suppression file that is under configs/ | 14:53 |
| wiking | and there's a CTEST_MEMORYCHECK_SUPPRESSIONS_FILE but i dont know how it should be set properly | 14:53 |
| besser82 | wiking: you should put that into CTestConfig.cmake | 14:56 |
| wiking | besser82: tried... doesn't work | 14:56 |
| besser82 | wiking: How did you set? | 14:56 |
| wiking | besser82: SET(CTEST_MEMORYCHECK_SUPPRESSIONS_FILE ${CTEST_SOURCE_DIRECTORY}/configs/valgrind.supp) | 14:56 |
| besser82 | wiking: that should be correct so far.... | 14:57 |
| besser82 | wiking: but it doesn't use it? | 14:58 |
| wiking | noup | 14:58 |
| wiking | when i run this: | 14:58 |
| wiking | ctest -D ExperimentalMemCheck -V -R unit | 14:58 |
| wiking | Memory check command: /usr/bin/valgrind "-q" "--tool=memcheck" "--leak-check=yes" "--show-reachable=yes" "--workaround-gcc296-bugs=yes" "--num-callers=50" | 14:59 |
| wiking | 316: MemCheck command: /usr/bin/valgrind "-q" "--tool=memcheck" "--leak-check=yes" "--show-reachable=yes" "--workaround-gcc296-bugs=yes" "--num-callers=50" "/home/wiking/shogun/build/tests/unit/shogun-unit-test" "--gtest_filter=MultipleProcessors.*" | 14:59 |
| wiking | as u see suppression is not set at all | 14:59 |
| besser82 | wiking: did you find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind) ? | 15:01 |
| wiking | besser82: valgrind works... | 15:01 |
| wiking | it's not the problem | 15:01 |
| wiking | the problem is that in DartConfiguration.tcl MemoryCheckSuppressionFile is still empty | 15:02 |
| besser82 | wiking: have re-run cmake on an empty build-dir? | 15:02 |
| besser82 | and treid? | 15:02 |
| wiking | yep | 15:02 |
| wiking | been there done that | 15:02 |
| wiking | ok | 15:04 |
| wiking | it's totally different | 15:04 |
| wiking | figured it out thnx | 15:04 |
| wiking | it's file(TO_CMAKE_PATH "${CMAKE_SOURCE_DIR}/configs/valgrind.supp" MEMORYCHECK_SUPPRESSIONS_FILE) | 15:05 |
| wiking | in the CMakeLists.txt | 15:06 |
| besser82 | wiking: ??? | 15:07 |
| besser82 | wiking: you need to set this im CMakeLists.txt ??? | 15:07 |
| wiking | besser82: yep | 15:08 |
| wiking | and it works | 15:08 |
| besser82 | wiking: strange and weird :S | 15:08 |
| wiking | well still that's the way it actually sets the right file in DartConfiguration.tcl | 15:08 |
| wiking | ok this is weird | 15:14 |
| wiking | the MemoryCheckSuppressionFile is only set in DartConfiguration.tcl if i run cmake twice | 15:14 |
| wiking | after the first run it's not set | 15:14 |
| wiking | ah ok | 15:15 |
| wiking | i guess it needs to be in the cache | 15:15 |
| wiking | :P | 15:15 |
| shogun-buildbot | build #49 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/49 blamelist: Viktor Gal <viktor.gal@maeth.com> | 15:18 |
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| wiking | ok caching did it's job... | 15:22 |
| shogun-buildbot | build #32 of clang34 - undefined behaviour analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/32 blamelist: Viktor Gal <viktor.gal@maeth.com> | 15:28 |
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| shogun-notifier- | shogun: Viktor Gal :develop * 381280c / CMakeLists.txt,configs/valgrind.supp: https://github.com/shogun-toolbox/shogun/commit/381280cbddfed958cbb0082efa4becf04f1727c0 | 15:40 |
| shogun-notifier- | shogun: Add valgrind suppression file when running ctest memcheck | 15:40 |
| shogun-notifier- | shogun: add strange leaking errors of libxml2 to the suppression file | 15:40 |
| shogun-buildbot | build #35 of clang34 - thread analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/35 blamelist: Viktor Gal <viktor.gal@maeth.com> | 15:42 |
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| gsomix | hello | 15:46 |
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| van51 | hello! | 16:14 |
| gsomix | van51, yo | 16:29 |
| wiking | this cmake gdb sucks man | 16:43 |
| wiking | this is why actually travis timesout | 16:44 |
| shogun-buildbot | build #50 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/50 blamelist: Viktor Gal <viktor.gal@maeth.com> | 17:48 |
| shogun-buildbot | build #33 of clang34 - undefined behaviour analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/33 blamelist: Viktor Gal <viktor.gal@maeth.com> | 18:01 |
| shogun-buildbot | build #36 of clang34 - thread analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/36 blamelist: Viktor Gal <viktor.gal@maeth.com> | 18:15 |
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| travis-ci | [travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/11814655 | 18:21 |
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| travis-ci | [travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/11817156 | 19:21 |
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| @HeikoS | wiking: around? | 20:00 |
| @HeikoS | wiking: how to list the latex errors in doxygen? | 20:00 |
| wiking | HeikoS: yeah i was wondering about that as well | 20:02 |
| wiking | haven't come up with a solution yet | 20:02 |
| @HeikoS | wiking: ok since I wanted to fix a few ;) | 20:03 |
| @HeikoS | wiking: thanks for the mathjax, thats so much nicer | 20:05 |
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| shogun-notifier- | shogun: Heiko Strathmann :develop * 493d6a8 / src/shogun/statistics/QuadraticTimeMMD.h: https://github.com/shogun-toolbox/shogun/commit/493d6a8f24712eff8d77d31d41efac8b028ea3d3 | 20:06 |
| shogun-notifier- | shogun: fix latex error in doxygen | 20:06 |
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| shogun-notifier- | shogun: Evgeniy Andreev :develop * 1a937e9 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/1a937e9794554f0497076403079e666f10a86608 | 20:11 |
| shogun-notifier- | shogun: add randomized unit-tests for IO, increase precision for ASCII writers | 20:11 |
| shogun-notifier- | shogun: Soeren Sonnenburg :develop * 9e0668e / / (4 files): https://github.com/shogun-toolbox/shogun/commit/9e0668ef6e51c020ccf965ba9c2e549a987fb544 | 20:11 |
| shogun-notifier- | shogun: Merge pull request #1679 from gsomix/feature/protobuf | 20:11 |
| shogun-notifier- | shogun: | 20:11 |
| shogun-notifier- | shogun: Unit-tests for IO | 20:11 |
| gsomix | sonney2k, thanks! | 20:16 |
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| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * ca29809 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/ca298091156b1871327f864e5147f78d65bbd6d6 | 20:41 |
| shogun-notifier- | shogun: initial draft for gp notebook | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * ee41942 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/ee41942828a6baa2399724b47a9a9f8d5e8c035e | 20:41 |
| shogun-notifier- | shogun: some updates on binary classification | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 792ec82 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/792ec8205d954614f78c97242b504a2c312097de | 20:41 |
| shogun-notifier- | shogun: some more updates for likelihoods | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 1ff81ab / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/1ff81ab0a310c5baff9ccc344542ff9fa54447e6 | 20:41 |
| shogun-notifier- | shogun: another paragraph on inference for binary classification | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 80ac579 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/80ac579cc86c7e27da51a33e5b3bfd2301e31ef3 | 20:41 |
| shogun-notifier- | shogun: some updates on inference and model-selection | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 238470b / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/238470b99f6692070b02b96bacbf51031319236f | 20:41 |
| shogun-notifier- | shogun: some more things on model-selection with ML2 | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 6772bac / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/6772bac11e1d273b0c85f6c5881a543e627f06c6 | 20:41 |
| shogun-notifier- | shogun: wrote part on toy regression | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 7432de9 / doc/ipython-notebooks/gaussian_process/gaussian_process_classification.ipynb: https://github.com/shogun-toolbox/shogun/commit/7432de9179cb2d9e054e4bbff4f8182a27185328 | 20:41 |
| shogun-notifier- | shogun: -use posterior GP methods that Romand just implemented | 20:41 |
| shogun-notifier- | shogun: -some more updates | 20:41 |
| shogun-notifier- | shogun: Heiko Strathmann :gp_notebook * 12af308 / src/shogun/lib/DataType.cpp: https://github.com/shogun-toolbox/shogun/commit/12af308973d5ff53b486b7d491a8a4e376771c80 | 20:41 |
| lisitsyn | romand :D | 20:41 |
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| wiking | haha | 21:13 |
| wiking | we should do something like this | 21:13 |
| wiking | http://www.kaggle.com/c/data-science-london-scikit-learn | 21:13 |
| shogun-notifier- | shogun: Viktor Gal :develop * 0de8b1a / src/shogun/ (3 files): https://github.com/shogun-toolbox/shogun/commit/0de8b1aa9d4299cac62f7e7f6070bd539c9f453f | 21:20 |
| shogun-notifier- | shogun: Fix leaking classes related issue #1477 | 21:21 |
| shogun-buildbot | build #1899 of deb3 - modular_interfaces is complete: Failure [failed test libshogun] Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/1899 blamelist: Heiko Strathmann <heiko.strathmann@gmail.com> | 21:22 |
| shogun-buildbot | build #2286 of deb1 - libshogun is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/2286 blamelist: Viktor Gal <viktor.gal@maeth.com> | 21:25 |
| shogun-buildbot | build #1900 of deb3 - modular_interfaces is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/1900 | 21:43 |
| shogun-notifier- | shogun: Viktor Gal :develop * cbd2f82 / src/shogun/classifier/vw/VwRegressor.cpp,tests/unit/base/SGObject_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/cbd2f823a0a8d9d3dfadc11667a8591f98640e29 | 21:46 |
| shogun-notifier- | shogun: Revert changes in VwRegressor.cpp | 21:46 |
| shogun-notifier- | shogun: fix a small memleak in SGObject.ref_unref unit test | 21:46 |
| shogun-buildbot | build #2287 of deb1 - libshogun is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/2287 | 21:51 |
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| sonne|osx | gsomix: hey there! how is it going? | 22:32 |
| sonne|osx | wiking: any news on anything? | 22:33 |
| shogun-notifier- | shogun: Viktor Gal :develop * eff23a5 / tests/integration/python_modular/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/eff23a5e8d18628eca8a10959aca7fe64430e6fb | 22:35 |
| shogun-notifier- | shogun: Fix typo in tests/integration/python_modular/CMakeLists.txt | 22:35 |
| shogun-notifier- | shogun: this should fix issue #1661 | 22:35 |
| wiking | sonne|osx: ^ | 22:35 |
| wiking | sonne|osx: other than that i'm fixing bugs | 22:35 |
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| sonne|osx_ | argh | 22:37 |
| sonne|osx_ | this LTE connection sucks | 22:37 |
| sonne|osx_ | onne|osx: wiking: and any thoughts - should we just change CSerialiableAsciiFile to write out with %.17g too? | 22:37 |
| sonne|osx_ | wiking: how can we enable this check for the unit tests? | 22:37 |
| sonne|osx_ | I want to get cyg1 to work | 22:38 |
| wiking | sonne|osx_: we need a macro for this... but i'll do it now | 22:38 |
| sonne|osx_ | wiking: kthx | 22:38 |
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| shogun-buildbot | build #51 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/51 blamelist: Evgeniy Andreev <gsomix@gmail.com> | 22:40 |
| sonne|osx | wiking: where do we put the notebooks on the website? Under about / examples? | 22:43 |
| wiking | sonne|osx: imo the current place is good | 22:43 |
| sonne|osx | wiking: where are they currently? | 22:43 |
| wiking | sonne|osx: /static/notebook/... | 22:43 |
| sonne|osx | wiking: well yeah but we have to expose them somehow on the website | 22:44 |
| wiking | we'll link to that somehow | 22:44 |
| sonne|osx | wiking: I mean they are totally hidden | 22:44 |
| wiking | yes | 22:44 |
| wiking | but that's another sotry | 22:44 |
| wiking | *story | 22:44 |
| sonne|osx | so I thought About/Notebooks ? | 22:44 |
| sonne|osx | or About / Examples | 22:44 |
| wiking | we still need to fix how they are generated | 22:44 |
| wiking | as they are buggy atm | 22:44 |
| sonne|osx | wiking: but only some right? | 22:44 |
| sonne|osx | not all? | 22:44 |
| wiking | http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/536/steps/notebooks/logs/stdio | 22:45 |
| wiking | a lot | 22:45 |
| wiking | see the exceptions | 22:45 |
| sonne|osx | wiking: do we want the test to fail if a notebook generation fails? | 22:45 |
| sonne|osx | IMHO we should do that... | 22:45 |
| wiking | yes | 22:46 |
| wiking | dunno why it's not doing it | 22:46 |
| sonne|osx | wiking: I disabled that - there is a | 22:46 |
| sonne|osx | || true in the script | 22:46 |
| sonne|osx | wiking: btw any idea how to strip of that crappy ansi stuff from the exception | 22:46 |
| sonne|osx | it makes it so hard to read | 22:46 |
| wiking | nowidea | 22:47 |
| sonne|osx | looks like it is just dependencies | 22:47 |
| sonne|osx | QuadraticMMD not known | 22:47 |
| wiking | sonne|osx: and as well missing the data dir... | 22:48 |
| wiking | etc. | 22:48 |
| sonne|osx | no | 22:48 |
| sonne|osx | data dir is there | 22:48 |
| wiking | sonne|osx: Exception: ['\x1b[1;31m---------------------------------------------------------------------------\x1b[0m\n\x1b[1;31mOSError\x1b[0m Traceback (most recent call last)', "\x1b[1;32m<ipython-input-4-eaf8f3665f21>\x1b[0m in \x1b[0;36m<module>\x1b[1;34m()\x1b[0m\n\x1b[0;32m 1\x1b[0m \x1b[1;31m# change to the shogun-data directoy\x1b[0m\x1b[1;33m\x1b[0m\x1b[1;33m\x1b[0m\x1b[0m\n\x1b[0;32m 2\x1b[0m \x1b[1;32mimport | 22:49 |
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| wiking | certainly not... | 22:49 |
| -!- new_lido [~walid@41.218.173.234] has quit [Remote host closed the connection] | 22:49 | |
| wiking | as it cannot find ../../../data/ica | 22:49 |
| sonne|osx | gtg | 22:49 |
| sonne|osx | brb | 22:49 |
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| shogun-buildbot | build #43 of debian wheezy - memcheck is complete: Failure [failed memory check] Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/43 blamelist: Evgeniy Andreev <gsomix@gmail.com>, Soeren Sonnenburg <sonne@debian.org> | 22:50 |
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| @iglesiasg | good evening guys | 22:52 |
| wiking | o | 22:54 |
| gsomix | iglesiasg, yo | 22:55 |
| gsomix | sonney2k, am doing some things related to university | 22:56 |
| @sonney2k | wiking, ahh I get it! | 23:02 |
| @sonney2k | wiking, easy to fix | 23:02 |
| @sonney2k | wiking, btw do we want to reproduce the structure of the notebooks on the website? | 23:03 |
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| @sonney2k | wiking, I mean all in one dir or subdirs? | 23:03 |
| wiking | nono it's ok in one dir | 23:03 |
| wiking | no need to for the dir struct | 23:03 |
| @sonney2k | wiking, ok | 23:05 |
| @sonney2k | gsomix, don't forget to submit your eval! | 23:05 |
| @sonney2k | gsomix, otherwise no money | 23:05 |
| gsomix | sonney2k, already submitted | 23:06 |
| @sonney2k | wiking, ok I fix this and you please give me the gdb for the unit :) | 23:06 |
| @sonney2k | gsomix, excellent | 23:06 |
| * sonney2k checks if sb else is still missing | 23:06 | |
| @sonney2k | vojtakovr didn't | 23:07 |
| @sonney2k | ohh man if he doesn't by end of tomorrow == no money | 23:07 |
| wiking | sonney2k: we'll see about that gdb... atm i'm not so convinced the way it is written... the cmake fil | 23:07 |
| @sonney2k | wiking, what is wrong? you can do a function if you prefer but the rest is OK no? | 23:13 |
| wiking | no | 23:15 |
| wiking | it's really not ok the way it's written... | 23:15 |
| wiking | if it would be ok it owuld be working... | 23:15 |
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| gsomix | good night | 23:26 |
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| @HeikoS | wiking: around? | 23:28 |
| shogun-buildbot | build #52 of clang34 - static analysis is complete: Failure [failed analyse] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/52 blamelist: Soeren Sonnenburg <sonne@debian.org> | 23:30 |
| wiking | HeikoS: ye | 23:31 |
| @HeikoS | wiking: so whats with this weird time out issue | 23:32 |
| @HeikoS | wiking: In the logs, only a few tests took long | 23:32 |
| wiking | HeikoS: TRY TO RUN | 23:32 |
| @HeikoS | wiking: tester.py runs totally fine locally | 23:32 |
| @HeikoS | python tester.ty | 23:32 |
| wiking | python_modular-modelselection_grid_search_krr_modular | 23:32 |
| @HeikoS | wiking: yeah I know, currently editing | 23:32 |
| @HeikoS | just compute less things, is expensive to do this in debug mode | 23:32 |
| wiking | ok other than that i've fixed the other problems i was writing about | 23:33 |
| @HeikoS | wiking: ok | 23:33 |
| @HeikoS | which other tests take too long? | 23:33 |
| @HeikoS | all grid-search ones? | 23:33 |
| wiking | well i couldn't find out | 23:33 |
| wiking | this one basically got stuck | 23:33 |
| wiking | 10+ mins and it was still running | 23:33 |
| @HeikoS | wiking: ok | 23:35 |
| @HeikoS | pushing a fix ... | 23:35 |
| @HeikoS | wiking: mathjax is cool! btw | 23:36 |
| shogun-buildbot | build #34 of clang34 - undefined behaviour analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/34 blamelist: Evgeniy Andreev <gsomix@gmail.com>, Soeren Sonnenburg <sonne@debian.org> | 23:40 |
| hushell | May I ask a question guys? I refactored a class, but the python modular still look for a delete function: modshogunPYTHON_wrap.cxx: In function 'PyObject* _wrap_SOSVMHelper_add_primal(PyObject*, PyObject*)': | 23:42 |
| @HeikoS | wiking: no its not as you say it on my machines. | 23:42 |
| @HeikoS | wiking: make test runs fine and fast until nr. 97 from which every one takes 70 secs | 23:43 |
| hushell | I have 'make clean', but doesn't helpful | 23:43 |
| @HeikoS | but python tester.py is fast | 23:43 |
| @HeikoS | hushell: try deleting the file | 23:43 |
| @HeikoS | hushell: build/src/interface/python_modular/modshogun*.cxx | 23:43 |
| hushell | HeikoS: I tried, rm modshogunPYTHON_wrap.cxx | 23:43 |
| wiking | HeikoS: have u pull the last commit? | 23:43 |
| @HeikoS | hushell: and you might also have to delete /usr/local/include/shogun | 23:43 |
| @HeikoS | hushell: thats a known issue https://github.com/shogun-toolbox/shogun/issues/1655 | 23:44 |
| @HeikoS | wiking: let me try | 23:44 |
| @HeikoS | wiking: when did you push? | 23:45 |
| @HeikoS | do I need to re-run anything? | 23:45 |
| hushell | I thought might be it looks for system directory, so I first make without python_modular and make install | 23:45 |
| @HeikoS | hushell: no its the local isntallation | 23:45 |
| @HeikoS | hushell: remove it, and doa new build, then this will be gone | 23:45 |
| hushell | okay, let me try :) | 23:46 |
| hushell | HeikoS: Thanks! | 23:46 |
| @HeikoS | wiking: ah cool, your patch solved the form97 issue | 23:47 |
| @HeikoS | wiking: lol, the model-selection tests that take so long to run do not output anything, so the test always passes if the program doenst crash | 23:49 |
| @sonney2k | wiking, ok most notebooks run now | 23:50 |
| wiking | sonney2k: gr8 | 23:51 |
| @sonney2k | 44 # gradient descent on marginal likelihood | 23:51 |
| @sonney2k | ---> 45 grad_search = GradientModelSelection(root, grad) | 23:51 |
| @sonney2k | 46 | 23:51 |
| @sonney2k | 47 # Set autolocking to false to get rid of warnings | 23:51 |
| @sonney2k | NotImplementedError: Wrong number or type of arguments for overloaded function 'new_GradientModelSelection'. | 23:51 |
| @sonney2k | Possible C/C++ prototypes are: | 23:51 |
| @sonney2k | shogun::CGradientModelSelection::CGradientModelSelection() | 23:51 |
| @sonney2k | shogun::CGradientModelSelection::CGradientModelSelection(shogun::CMachineEvaluation *,shogun::CModelSelectionParameters *) | 23:51 |
| @sonney2k | shogun::CGradientModelSelection::CGradientModelSelection(shogun::CMachineEvaluation *) | 23:51 |
| wiking | sonney2k: NLOPT | 23:51 |
| @sonney2k | HeikoS, notebook gp_regression fails | 23:51 |
| @HeikoS | sonney2k: delete it | 23:51 |
| wiking | sonney2k: we'll need to bundle it | 23:52 |
| @sonney2k | wiking, ahh ok | 23:52 |
| @HeikoS | sonney2k: will be replaced by the new all in one GP one | 23:52 |
| @sonney2k | wiking, well nlopt is in newer debian so we can fix it | 23:52 |
| @sonney2k | iglesiasg, LMNN fails too | 23:52 |
| @sonney2k | HeikoS, well then rather replace it yourself now | 23:55 |
| @HeikoS | sonney2k: not ready yet, but I can delete the old ones | 23:56 |
| shogun-buildbot | build #37 of clang34 - thread analysis is complete: Failure [failed test] Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/37 blamelist: Evgeniy Andreev <gsomix@gmail.com>, Soeren Sonnenburg <sonne@debian.org> | 23:56 |
| @sonney2k | HeikoS, the old one - singular right? | 23:57 |
| @HeikoS | sonney2k: no, both the classification and the regression ones can go | 23:57 |
| @sonney2k | HeikoS, then remove them | 23:57 |
| @sonney2k | wiking, nlopt is installed on that machine btw | 23:58 |
| @sonney2k | HeikoS, is the logdet.ipynb yours? | 23:58 |
| @sonney2k | it says it is not valid JSON and is dying | 23:58 |
| @HeikoS | sonney2k: thats rahul's, why? | 23:59 |
| @sonney2k | IPython.nbformat.current.NotJSONError: Notebook does not appear to be JSON: u'{\n "metadata": {' | 23:59 |
| @HeikoS | sonney2k: no idea, will check in a bit | 23:59 |
| --- Log closed Fri Sep 27 00:00:06 2013 | ||
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