IRC logs of #shogun for Monday, 2014-02-17

--- Log opened Mon Feb 17 00:00:02 2014
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shogun-notifier-shogun-data: Parijat Mazumdar :master * eca3b38 / multiclass/iris.data: https://github.com/shogun-toolbox/shogun-data/commit/eca3b385ab35d5fca71324199e3bbc171dbd8cd108:30
shogun-notifier-shogun-data: added Iris dataset for 3 class classification/clustering08:30
shogun-notifier-shogun-data: Fernando Iglesias :master * 738aa88 / multiclass/iris.data: https://github.com/shogun-toolbox/shogun-data/commit/738aa8801431f6482a6c57ad9dac94ec5d5210a808:30
shogun-notifier-shogun-data: Merge pull request #31 from mazumdarparijat/master08:30
shogun-notifier-shogun-data:08:30
shogun-notifier-shogun-data: added Iris dataset for 3 class classification/clustering08:30
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tejasnikumbhHi everybody.08:58
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wikinghi09:02
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sonne|workwiking: good morning09:22
sonne|workwiking: why do we have 2 jobs in allowed failures https://travis-ci.org/shogun-toolbox/shogun09:22
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shogun-notifier-shogun: Thoralf Klein :develop * a6f94b5 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/a6f94b5e37b7584c2c0f30cff0c79fad649af29409:26
shogun-notifier-shogun: Added first draft of "quickstart" instructions to documentation.09:26
shogun-notifier-shogun: Thoralf Klein :develop * 4f3989a / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/4f3989a95ac7a695259bc6a0ea1a4ae1e835a55c09:26
shogun-notifier-shogun: Don't clone git, download release tarball.09:26
shogun-notifier-shogun: Thoralf Klein :develop * 887828a / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/887828ac5696d40a11a091c6215a39d0e1a5243309:26
shogun-notifier-shogun: Polishing of quickstart guide.  Minor fixes, more information, formatting.09:26
shogun-notifier-shogun: Thoralf Klein :develop * 77319ef / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/77319efd61e0ee9769bb3cd70ec02bf80a63cc9f09:26
shogun-notifier-shogun: Small tweaks.  More introductory text.09:26
shogun-notifier-shogun: Thoralf Klein :develop * bc89eb3 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/bc89eb3f6c51fbcfe6373195bc6b058fcb9d621a09:26
shogun-notifier-shogun: Micro-optimization.09:26
shogun-notifier-shogun: Thoralf Klein :develop * eed1ba4 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/eed1ba42bbb8466f5579a00cbef583a3cea9933709:26
shogun-notifier-shogun: Fixed directories in instructions.09:26
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shogun-notifier-shogun: Thoralf Klein :develop * 49cdf0c / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/49cdf0c5791d9994f77d37d01845343f801ed14609:26
shogun-notifier-shogun: Fixed commands regard downloading and preparing shogun-data.09:26
shogun-notifier-shogun: Soeren Sonnenburg :develop * 4da0570 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/4da05703858b83c9e67bd3e9e602dd1396ee039009:26
shogun-notifier-shogun: Merge pull request #1867 from tklein23/develop09:26
shogun-notifier-shogun:09:26
shogun-notifier-shogun: Added first draft of "quickstart" instructions to documentation.09:26
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shogun-notifier-shogun: Soeren Sonnenburg :master * c0c7f6a / README.md: https://github.com/shogun-toolbox/shogun/commit/c0c7f6a04e34b9b93be18b7debb6e6dca8009cbd09:28
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shogun-notifier-shogun: link quickstart09:28
shogun-notifier-shogun: Soeren Sonnenburg :develop * 6dca06f / README.md: https://github.com/shogun-toolbox/shogun/commit/6dca06f6c5507089f4512777662095a923e6151f09:29
shogun-notifier-shogun: link quickstart09:29
shogun-buildbotbuild #118 of deb4 - python3 is complete: Failure [failed python modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/118  blamelist: Soeren Sonnenburg <sonne@debian.org>10:14
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shogun-buildbotbuild #119 of deb4 - python3 is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/11911:49
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votjakovrHeikoS1: Hi! I was thinking about another possible optimization. Sometimes we need to apply some function f(x) of one variable to all elements of some matrix X and we can do this in parallel. This optimization might speedups numerical integration for example. What do you think about that?12:56
HeikoS1votjakovr: yes, that is something we really want to do12:57
HeikoS1votjakovr: mmh we should maybe first unify the internal multicore capabilities12:58
HeikoS1in order to avoid all thi pthread stuff12:58
HeikoS1which is hard to maintain12:58
HeikoS1but yes I totally agree with you!12:58
HeikoS1great idea! :)12:58
HeikoS1if you wanna do it, feel free.12:58
HeikoS1btw sorry about the kernel bug, I am ultra busy, but will try to fix it soon12:58
HeikoS1gsoc is currently more urgent12:58
votjakovrHeikoS1: ok :)12:58
votjakovrHeikoS1: probably we need to think about some general parallel framework12:59
HeikoS1votjakovr: yeah, maybe even without the distributed stuff13:03
HeikoS1just multicore13:03
HeikoS1votjakovr: we could do this together if you like, there is not so much work to do on this13:03
votjakovrHeikoS1: yeah, i'd like to do so :)13:06
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votjakovrHeikoS1: i'd like to move all parallel stuff in one place13:06
HeikoS1votjakovr:  cool. So did you ever look at the independent jobs part of lambday?13:06
HeikoS1votjakovr: exactly13:06
HeikoS1and then have a unified interface for multicore13:06
HeikoS1with possible extensions for distributed (although thats a bit harder)13:06
HeikoS1but we can do this step by step13:07
votjakovrHeikoS1: nope, didn't see lambday's independent jobs part13:08
HeikoS1votjakovr: have a look at it13:08
HeikoS1CComputationEngine13:08
HeikoS1CIndependentJob13:09
HeikoS1etc13:09
HeikoS1used in his LogDetEstimator framework13:09
HeikoS1has a very nice api13:09
wikingHeikoS1: have u check this task: http://shogun-toolbox.org/page/Events/gsoc2014_ideas#independent_jobs13:09
wikingHeikoS1: that fw needs refactoring13:09
HeikoS1wiking: yeah thats related13:09
HeikoS1but we are more taking about multicore stuff here13:10
HeikoS1though the interface should be unified13:10
wikingHeikoS1: have u read it?13:10
HeikoS1so you would work on the non-distributed multicore stuff13:10
HeikoS1yeah13:10
HeikoS1was my idea13:10
wikingHeikoS1: ok then you would know that this should be done at once13:10
HeikoS1yeh13:10
wikingdistributed is distributed13:10
wikingregardless of cluter or multicore13:11
HeikoS1but actually we can start with multicore13:11
wikingno13:11
HeikoS1since the interface already can do this13:11
HeikoS1wiking: this is more abou backend not?13:11
wikingnoup13:11
HeikoS1api is fine13:11
wikingit's more about13:11
wikinghow to do this in a unified way13:11
HeikoS1the existing api is already capable of handling the things13:11
HeikoS1but yeah13:11
HeikoS1votjakovr: sorry then, depend on whether we do a project on this13:11
wikingi.e. scheduling etc13:11
HeikoS1but in my eyes it would already be good to have simple scheduling multicore13:12
wikingso we do not want now that somebody starts developing a multicore support13:12
HeikoS1just as pthread stuff is doing now13:12
HeikoS1so same functionality with unified interface13:12
wikingthat will never be able to be ported to a cluster system13:12
wikingHeikoS1: the problem with that is that actually that will not work work with cluster systems13:12
votjakovrHeikoS1: ok, no problem13:12
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HeikoS1wiking: ok, agreed, but some things will never go cluster such as kernel matrix computation13:13
HeikoS1doesnt make sense13:13
wikingHeikoS1: and?13:13
HeikoS1ah anyways13:13
wikingwe should not care about that13:13
HeikoS1votjakovr: its a pitty you are not a student ;)13:13
HeikoS1votjakovr: otherwise you could just do all of that13:13
wikingthe whole problem here is that we need to be able to provide a layer where data is always there13:13
HeikoS1wiking: yeah I agree with you13:13
HeikoS1wiking: should be done properly13:13
wikingand that makes a lot of things complicated13:13
HeikoS1votjakovr: so either pthreads for now, or later13:13
wikingso pthreads is not a way to do things13:14
HeikoS1aka later in the summer13:14
wikingbecause that'll just have the same problems13:14
wikingas we have atm13:14
wikingwe need something similar like spark13:14
wikingi.e in-memory ds13:14
wikingbut the problem with spark of course is that it's java...13:15
HeikoS1wiking: multicore should still be easy and straight forward to use from within shogun13:15
HeikoS1wiking: lets talk about this later today13:15
HeikoS1Ill join the stammtisch13:15
HeikoS1votjakovr: feel free to join too btw13:15
wikingHeikoS1: yeah it's easy to do13:15
HeikoS1we can talk in quiet then13:15
HeikoS1I gotta do something now, will be back later13:15
wikingbut then we have the problem that it will never be able to be ported13:16
wikingto a cluster system13:16
wikingand we end up having 2 completely different apis13:16
HeikoS1wiking: yes totally agreed13:16
HeikoS1well13:16
HeikoS1I have some more thoughts, but lets talk later13:16
wikingk13:17
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sonne|workwiking: why do we have 2 jobs in allowed failures https://travis-ci.org/shogun-toolbox/shogun ?13:39
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votjakovrHeikoS1: BTW have you tried to create CGaussianDistribution with non symmetric covariance matrix? Sometimes it doesn't report any errors.13:49
HeikoS1votjakovr: uh thats not good13:50
HeikoS1votjakovr: we should clean up and unify the Gaussian distributions13:51
HeikoS1and add checks for such things, as well as low rank versions to avoid these stupid non-psd errors13:51
HeikoS1votjakovr: I guess whether an error or not occurs depends on eigen313:51
shogun-buildbotbuild #207 of debian wheezy - memcheck is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/20713:51
votjakovrHeikoS1: yep, i agree with you13:56
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wikingsonne|work: because R is failing14:43
wikingsonne|work: the other one popped in a while ago and i honestly dont know why it got there14:44
wikingsonne|work: but then again .travis.yml explains it all14:44
wikingsonne|work: or you mean why do we have 2 instead of 1?14:44
wikingthat i honestly dont know14:44
wikingit shouldn't be according to .travis.yml14:44
sonne|workyes 2 instead of 114:45
wikingdunno14:46
wikingthat happened somewhere around october14:46
sonne|workwiking: ok I honestly have no idea why R is failing on travis (but not on our buildbot...)14:46
wikingand i have no idea why it got there14:46
sonne|workwiking: in any case osx and python3 are now tested too :-))14:46
wikingthat's good14:47
wikingR is just about more hacking14:47
wikingit needs more love and that's all imho14:47
sonne|workwell we need a system where it fails14:47
sonne|workit works on buildbot so...14:47
wikingsonne|work: and we have travis where it fails ;)14:48
wikingit's a system, or :)14:48
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shogun-buildbotbuild #208 of debian wheezy - memcheck is complete: Failure [failed memory check generate html]  Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/208  blamelist: Soeren Sonnenburg <sonne@debian.org>, Thoralf Klein <thoralf.klein@zib.de>15:32
* wiking forgot to add the windows porting task :16:23
sonne|workwiking: not only windows - lets make it really stuff for all archs17:04
sonne|workwiking: have you seen that one can now download the .dmg?17:04
wikingsonne|work: yeah that's great17:04
sonne|workwiking: but it is not useful17:04
wikingi saw an email about17:04
wikingthat it needs fixing17:04
sonne|workwe had a report about that...17:05
sonne|workno idea if it is us who can do that faster...17:05
sonne|workbut currently I don't see that we are faster...17:05
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@sonney2kiglesiasg, alrighty19:40
@sonney2krelease time19:40
@iglesiasgwow19:40
HeikoS1joining shognu efforts soon, just finishing some stuff at work19:46
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shogun-notifier-shogun: Soeren Sonnenburg :master * 62d2113 / NEWS,scripts/Makefile.release: https://github.com/shogun-toolbox/shogun/commit/62d2113f38d6bc1df46737fe4e45eba7cc9a778a19:46
shogun-notifier-shogun: fix release script and update NEWS for develop19:46
shogun-notifier-shogun: Soeren Sonnenburg :master * 8679dbf / CMakeLists.txt,examples/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/8679dbfeca7db826c9587d68196d08ffef48fbbb19:46
shogun-notifier-shogun: don't include dirs if the don't exist19:46
shogun-notifier-shogun: Björn Esser :master * 1453bd5 / examples/undocumented/java_modular/foo_uncompressed.str: https://github.com/shogun-toolbox/shogun/commit/1453bd52dad26c1602faab25588f45848672afa619:46
shogun-notifier-shogun: clean sparse file from testsuite19:46
shogun-notifier-shogun: Björn Esser :master * 5cfeb89 / examples/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/5cfeb892028f7ae80073305ad2e081567f0705c219:46
shogun-notifier-shogun: fix inclusion of subdirs19:46
shogun-notifier-shogun: Björn Esser :master * e699ddb / / (2 files): https://github.com/shogun-toolbox/shogun/commit/e699ddbe5fe94cc8933c4060588451e6d8b4eb2319:46
shogun-notifier-shogun: fix build of java_modular with OpenJDK19:46
shogun-notifier-shogun: Viktor Gal :master * cbf1553 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/cbf155368ec14c0c08e97aeb2573d5bcbd15bd0619:46
shogun-notifier-shogun: Merge pull request #1809 from shogun-toolbox/feature/fix-java_modular19:46
shogun-notifier-shogun: DualLibQPBMSOSVM::train_machine: True exit status if one of the stopping conditions is met.19:47
shogun-notifier-shogun: Thoralf Klein :master * 3e004ab / tests/unit/structure/DualLibQPBMSOSVM_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/3e004aba2211b7b7dc4e8238ada3d8ebc177931619:47
shogun-notifier-shogun: libbmrm: Added unittest to prove that DualLibQPBMSOSVM has a problem if the buffer size is exceeded.19:47
shogun-notifier-shogun: Thoralf Klein :master * fced4e0 / src/shogun/structure/libbmrm.cpp,src/shogun/structure/libbmrm.h: https://github.com/shogun-toolbox/shogun/commit/fced4e0144c303728c75bd2667ab7184fea1c92019:47
shogun-notifier-shogun: libbmrm: Changes fix memory errors; added prober bounds checking (at least assertions).19:47
shogun-notifier-shogun: Thoralf Klein :master * 81ae3f5 / src/shogun/structure/libbmrm.cpp: https://github.com/shogun-toolbox/shogun/commit/81ae3f524056e979e73df6344475f17baa44d12c19:47
shogun-notifier-shogun: libbmrm: Overworking history handling.  Growing history on demand.19:47
shogun-notifier-shogun: Thoralf Klein :master * 4d93565 / src/shogun/structure/libbmrm.cpp: https://github.com/shogun-toolbox/shogun/commit/4d93565e5a3cfc9b15c854b76ec37528c902e0c819:47
shogun-notifier-shogun: libbmrm: Checking for integer overflow when allocating memory for matrix.19:47
shogun-notifier-shogun: Thoralf Klein :master * d52d373 / src/shogun/structure/libbmrm.cpp: https://github.com/shogun-toolbox/shogun/commit/d52d373e1bb4b5cb44f6391e96655a15c9b36c4319:47
shogun-notifier-shogun: libbmrm: Changed how to controll debugging output in libbmrm.19:47
shogun-notifier-shogun: Björn Esser :master * 148ddb2 / cmake/version.cmake: https://github.com/shogun-toolbox/shogun/commit/148ddb20cad3cf749c9ea7ed8914f48d0387be7219:47
shogun-notifier-shogun: make version.cmake Python3-aware19:47
shogun-notifier-shogun: Björn Esser :master * 4efb5d8 / src/.doxy2swig.py: https://github.com/shogun-toolbox/shogun/commit/4efb5d8d0ee41fd738cf81c96ccad8d999aca63b19:47
shogun-notifier-shogun: pull in the modified doxy2swig provided by adrin19:47
shogun-notifier-shogun: Björn Esser :master * c03d93a / tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/c03d93af303ea686a95031cf7779ba18af080d1019:47
shogun-notifier-shogun: 2to3ized python_modular-intergration-tests19:47
shogun-notifier-shogun: Björn Esser :master * 02dead1 / cmake/checkgdb.cmake: https://github.com/shogun-toolbox/shogun/commit/02dead112c379250676b5f12b7f3f2b2f2d421d019:47
shogun-notifier-shogun: use libstdc++ for libshogun on NOT OSX by default19:47
shogun-notifier-shogun: Fernando Iglesias :master * 8e085ad / tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/8e085adb055ce724f4925f18b79853bd8f13fa0719:47
shogun-notifier-shogun: Fix typo in tester script19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 944b0b8 / examples/undocumented/python_modular/structure_mutliclass_bmrm.py: https://github.com/shogun-toolbox/shogun/commit/944b0b8abcda29d2fad2a5b0bff2c6b40ab4fab319:47
shogun-notifier-shogun: make bmrm example return some output19:47
shogun-notifier-shogun: Parijat Mazumdar :master * 05408fa / / (3 files): https://github.com/shogun-toolbox/shogun/commit/05408fa731cda5f32e300b80f3ed6fcce1b944f919:47
shogun-notifier-shogun: kmeans++ added19:47
shogun-notifier-shogun: Fernando Iglesias :master * c84dc0e / / (3 files): https://github.com/shogun-toolbox/shogun/commit/c84dc0ece4d22bc36b08eae076556f6b020a74d119:47
shogun-notifier-shogun: Merge pull request #1817 from mazumdarparijat/new_kmeans19:47
shogun-notifier-shogun:19:47
shogun-notifier-shogun: kmeans++ added19:47
shogun-notifier-shogun: Fernando Iglesias :master * 3ee2a0b / src/shogun/clustering/KMeans.cpp,src/shogun/clustering/KMeans.h: https://github.com/shogun-toolbox/shogun/commit/3ee2a0b1fb421556531028b801b50d0da670f0ba19:47
shogun-notifier-shogun: Make KMeans::get_use_kmeanspp() const properly.19:47
shogun-notifier-shogun: Fernando Iglesias :master * e0a2c6a / examples/undocumented/python_modular/graphical/cluster_kpp.py: https://github.com/shogun-toolbox/shogun/commit/e0a2c6acd16c962c72adee48bbcbc4b31d51ff7a19:47
shogun-notifier-shogun: Fix typo in KMeans++ graphical example.19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 78e8a79 / src/shogun/base/SGObject.cpp,tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/78e8a799b907579d7044c52d202f7d8c629600fb19:47
shogun-notifier-shogun: don't be overly verbose when comparing objects19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 45daa86 / tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/45daa86de3ce76fcad209330664a6310d6ee35fa19:47
shogun-notifier-shogun: fix ClusteringMutualInformation - init matrix as zero fixing valgrind errors and tests19:47
shogun-notifier-shogun: iglesias :master * 22e4123 / data: https://github.com/shogun-toolbox/shogun/commit/22e41237ae592104ee5a8bbbaf85f0493f66fc8919:47
shogun-notifier-shogun: Update data submodule19:47
shogun-notifier-shogun: Fernando Iglesias :master * 1b32e2a / data: https://github.com/shogun-toolbox/shogun/commit/1b32e2aadf37f1323204e2dd852a7f53259c6eb019:47
shogun-notifier-shogun: Merge pull request #1823 from iglesias/develop19:47
shogun-notifier-shogun:19:47
shogun-notifier-shogun: Update data submodule19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 5218c27 / src/shogun/ (3 files): https://github.com/shogun-toolbox/shogun/commit/5218c2733912c820c2f8cb2466fb776db182a9a919:47
shogun-notifier-shogun: fix documentation19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 3fd23d7 / tests/integration/python_modular/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/3fd23d7d62f8a0552e6f23829604b8bd6706372a19:47
shogun-notifier-shogun: set a 1e-15 tolerance when comparing floats in tester19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 2edf70f / tests/integration/python_modular/ (2 files): https://github.com/shogun-toolbox/shogun/commit/2edf70f9e3407e0fa68261f1651c7c9d0de5d69719:47
shogun-notifier-shogun: give tester 1e-15 tolerance itself and drop that param from cmakelists19:47
shogun-notifier-shogun: Soeren Sonnenburg :master * 71b876f / tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/71b876f235ec92da9e3537b7343a979bee87df7519:47
shogun-notifier-shogun: fix bug in tester19:47
shogun-notifier-shogun: iglesias :master * 1552545 / tests/integration/python_modular/tester.py: https://github.com/shogun-toolbox/shogun/commit/15525454831a88ea9d7820520c85866ffa63c33219:47
shogun-notifier-shogun: Fix integration bug in call to compare method.19:47
shogun-notifier-shogun: The number of arguments increased in recent commit.19:47
shogun-notifier-shogun: minor changes in KMeans19:48
shogun-notifier-shogun: Roman Votyakov :master * 752c0d1 / tests/unit/machine/gp/InferenceMethod_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/752c0d13f6e5f848a228e5404c1725f589d69cb419:48
shogun-notifier-shogun: add unit test with marginal likelihood estimate with EP19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * d64d596 / examples/undocumented/python_modular/ (2 files): https://github.com/shogun-toolbox/shogun/commit/d64d59691fd50dff35c5deb3af0a4df1d508ab5119:48
shogun-notifier-shogun: Don't kill whole test chain with sys.exit19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * f218255 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/f218255ae62dd3a69c38304fab47689247646c0219:48
shogun-notifier-shogun: drop libstdc++ workaround from cmake lists19:48
shogun-notifier-shogun:19:48
shogun-notifier-shogun: for osx we need swig 3.0.0 (currently git clone only) for a modular19:48
shogun-notifier-shogun: interface to work19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * c00e58f / tests/unit/lib/SGVector_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/c00e58fd1a0624a4a25f1002b7fb6045175a9a7119:48
shogun-notifier-shogun: use expect_near macros when comparing results19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 35485c8 / tests/unit/lib/SGVector_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/35485c8dffe64a8994094ea0a4f6beccf8b0ba4919:48
shogun-notifier-shogun: seed rng to get reproducible tests19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 9058910 / src/interfaces/modular/modshogun_ignores.i: https://github.com/shogun-toolbox/shogun/commit/9058910c5d892921d72f3910ebd2ad99ccde800619:48
shogun-notifier-shogun: fix compile error occurring with swig319:48
shogun-notifier-shogun: Viktor Gal :master * 7822cc2 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/7822cc2154924da366f8f08ee4e4508172ebfd9419:48
shogun-notifier-shogun: Fix libc++ and libstdc++ mixup on OSX with swig 2.0.11 or earlier19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 77694e6 / examples/undocumented/python_modular/ (2 files): https://github.com/shogun-toolbox/shogun/commit/77694e6e2d0726bf430d77764ee47974a54bbf5b19:48
shogun-notifier-shogun: drop the cPickle import that might kill python3 serialization tests19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * be89990 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/be8999080ae8a71aaef00303a180d3b6bf3dcf1419:48
shogun-notifier-shogun: use higher precision (eps 1e-7) for example19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * c2c9b1b / data: https://github.com/shogun-toolbox/shogun/commit/c2c9b1bed320f45577f38367e69c351a0413f7e919:48
shogun-notifier-shogun: require new data version w/ python3 regression tests19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * b073783 / tests/integration/python_modular/generator.py: https://github.com/shogun-toolbox/shogun/commit/b07378322fcc045086a11ddc2958fd42834b800519:48
shogun-notifier-shogun: add mathematics_logdet.py to blacklist19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 795bce9 / tests/integration/python_modular/generator.py: https://github.com/shogun-toolbox/shogun/commit/795bce93c6f810caaae1260851e173ddb39c79cd19:48
shogun-notifier-shogun: disable svmlight batch example for now19:48
shogun-notifier-shogun: Parijat Mazumdar :master * d2b08e2 / doc/ipython-notebooks/clustering/KMeans.ipynb: https://github.com/shogun-toolbox/shogun/commit/d2b08e224cdc43dc8b174e8b6fbf6e17bec8dea019:48
shogun-notifier-shogun: KMeans notebook added19:48
shogun-notifier-shogun: Viktor Gal :master * c641e93 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/c641e93f9e73f4f599e70155ef342c517a4af06a19:48
shogun-notifier-shogun: Make valgrind fail return -1 when running ctest memleak check19:48
shogun-notifier-shogun: Fernando Iglesias :master * cd2b13f / doc/ipython-notebooks/clustering/KMeans.ipynb: https://github.com/shogun-toolbox/shogun/commit/cd2b13fda34fc83f0c2cb0305f7027569fd8b25219:48
shogun-notifier-shogun: Merge pull request #1835 from mazumdarparijat/KMeans_notebook19:48
shogun-notifier-shogun:19:48
shogun-notifier-shogun: KMeans notebook added19:48
shogun-notifier-shogun:19:48
shogun-notifier-shogun: clone fixed for SGMatrix type parameters19:48
shogun-notifier-shogun: Viktor Gal :master * b48f7c1 / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/b48f7c11e2f9ccd7f461cef4d5493216df9f3b5119:48
shogun-notifier-shogun: Exclude header files from coveralls report19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 798d956 / data: https://github.com/shogun-toolbox/shogun/commit/798d956aa868c272000b01a57867f713dc2640bb19:48
shogun-notifier-shogun: update data19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 134f7fb / tests/integration/python_modular/ (2 files): https://github.com/shogun-toolbox/shogun/commit/134f7fb75b4288dbf23c2d64f87a1fea21a0927019:48
shogun-notifier-shogun: fix osx build errors19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * a3b80d7 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/a3b80d770c4be3a0780e6579d059c845b6288fbb19:48
shogun-notifier-shogun: blacklist failing example19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * de2418e / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/de2418ec10c94d1dbd2a4eaaaab19cf9f5468c1319:48
shogun-notifier-shogun: fix osx travis build19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 8162d96 / src/shogun/multiclass/MulticlassOCAS.cpp: https://github.com/shogun-toolbox/shogun/commit/8162d96e3cc4cef79323d6efe5ffb748ada6571919:48
shogun-notifier-shogun: use SG_CALLOC to init memory with 0 and fix mc ocas19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * 57bcf1e / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/57bcf1e435780bd7ae610dd54fe6bca3520a699219:48
shogun-notifier-shogun: require osx to not fail on travis19:48
shogun-notifier-shogun: Soeren Sonnenburg :master * be8c340 / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/be8c3406641417d5b85a1f3f318bbf5696a03da119:48
shogun-notifier-shogun: show origins in valgrind runs and drop reachable memory leak warnings (too many false positives)19:48
shogun-notifier-shogun: fall back to strtod on win32 for strtold19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * 9dabfca / / (9 files): https://github.com/shogun-toolbox/shogun/commit/9dabfca2c9c14800a63ee7711c5d1164eaed46f119:49
shogun-notifier-shogun: Add tmp directory inside python modular examples and direct all temporary19:49
shogun-notifier-shogun: output to that dir. This fixes tests running concurrently that read the19:49
shogun-notifier-shogun: files in the examples directory.19:49
shogun-notifier-shogun: Roman Votyakov :master * 9fae7d7 / src/shogun/distributions/classical/GaussianDistribution.cpp: https://github.com/shogun-toolbox/shogun/commit/9fae7d733fda68043f9901e928a41add7130568219:49
shogun-notifier-shogun: fix check of the dimensions in log_pdf_multiple() method of the CGaussianDistribution class19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * 332be4b / src/shogun/mathematics/Math.cpp: https://github.com/shogun-toolbox/shogun/commit/332be4b5751978760c5e1be4c4c09db803031a6a19:49
shogun-notifier-shogun: attempt to fix cygwin build19:49
shogun-notifier-shogun: Heiko Strathmann :master * 44ba9aa / src/shogun/distributions/classical/GaussianDistribution.cpp: https://github.com/shogun-toolbox/shogun/commit/44ba9aa6474e975624de357dbaa2d17a19d77d7219:49
shogun-notifier-shogun: Merge pull request #1859 from votjakovr/develop19:49
shogun-notifier-shogun:19:49
shogun-notifier-shogun: fix check of the dimensions in log_pdf_multiple() method of the CGaussianDistribution class19:49
shogun-notifier-shogun: Heiko Strathmann :master * 8d98aab / tests/unit/machine/gp/InferenceMethod_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/8d98aab328c649e90e5300b7a698f25de5a8296a19:49
shogun-notifier-shogun: Merge pull request #1833 from votjakovr/feature/gp_refactoring19:49
shogun-notifier-shogun:19:49
shogun-notifier-shogun: Add unit test with marginal likelihood estimate with EP19:49
shogun-notifier-shogun: Parijat Mazumdar :master * 28f0753 / tests/unit/clustering/kmeans_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/28f07533c5fcad87a29558fb5e9f80765ffb881d19:49
shogun-notifier-shogun: added a new string kernel SSK19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * 0956191 / src/interfaces/modular/Classifier.i,src/interfaces/modular/Classifier_includes.i: https://github.com/shogun-toolbox/shogun/commit/0956191179c8bb24306950b956ca5a17c6eaca2b19:49
shogun-notifier-shogun: move svmlight include next to libsvm19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * b97c4be / src/shogun/classifier/svm/SVMLight.h: https://github.com/shogun-toolbox/shogun/commit/b97c4bea8f7e3fbdeb667a9fc54f185d2304d0fb19:49
shogun-notifier-shogun: do not include kernel etc in svmlight19:49
shogun-notifier-shogun: lambday :master * c77fca7 / src/shogun/kernel/string/StringSubsequenceKernel.cpp: https://github.com/shogun-toolbox/shogun/commit/c77fca7ea42815daab3079199667578a3db3075b19:49
shogun-notifier-shogun: changed feature vectors from SGVector in ssk::compute19:49
shogun-notifier-shogun: Heiko Strathmann :master * b9c9ecf / src/shogun/kernel/string/StringSubsequenceKernel.cpp: https://github.com/shogun-toolbox/shogun/commit/b9c9ecfd982690ea5db8625d556e9c724dce95e019:49
shogun-notifier-shogun: Merge pull request #1864 from lambday/develop19:49
shogun-notifier-shogun:19:49
shogun-notifier-shogun: changed feature vectors from SGVector in ssk::compute19:49
shogun-notifier-shogun: Fernando Iglesias :master * 34b087f / doc/ipython-notebooks/clustering/KMeans.ipynb: https://github.com/shogun-toolbox/shogun/commit/34b087f4279ea3f61ec6ccf94fb1b6a9800b283d19:49
shogun-notifier-shogun: Merge pull request #1863 from mazumdarparijat/KMeans_notebook19:49
shogun-notifier-shogun:19:49
shogun-notifier-shogun: minor change in KMeans notebook19:49
shogun-notifier-shogun: Fernando Iglesias :master * c07efa5 / doc/ipython-notebooks/multiclass/KNN.ipynb: https://github.com/shogun-toolbox/shogun/commit/c07efa5823c01c5c01081a7bc58126055d5d76ae19:49
shogun-notifier-shogun: Typo fixes and other minor changes in multiclass KNN notebook.19:49
shogun-notifier-shogun: Fernando Iglesias :master * 961427a / doc/ipython-notebooks/multiclass/KNN.ipynb: https://github.com/shogun-toolbox/shogun/commit/961427a8fa42458acb0e42b6637f930333b87fa119:49
shogun-notifier-shogun: Polishing of quickstart guide.  Minor fixes, more information, formatting.19:49
shogun-notifier-shogun: Thoralf Klein :master * 77319ef / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/77319efd61e0ee9769bb3cd70ec02bf80a63cc9f19:49
shogun-notifier-shogun: Small tweaks.  More introductory text.19:49
shogun-notifier-shogun: Thoralf Klein :master * bc89eb3 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/bc89eb3f6c51fbcfe6373195bc6b058fcb9d621a19:49
shogun-notifier-shogun: Micro-optimization.19:49
shogun-notifier-shogun: Parijat Mazumdar :master * f72577d / doc/ipython-notebooks/clustering/KMeans.ipynb: https://github.com/shogun-toolbox/shogun/commit/f72577dcbf9278ad1cac358b1bd01e64573212df19:49
shogun-notifier-shogun: clustering accuracy added to KMeans notebook19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * b7a703c / CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/b7a703c986a4a46c5ff0d97b005665b34aea21e519:49
shogun-notifier-shogun: require swig 2.0.12 for osx to work fine19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * a7d6eea / src/interfaces/modular/modshogun.i: https://github.com/shogun-toolbox/shogun/commit/a7d6eea41b10aebe4ba4e6433c41d35de07dbe8519:49
shogun-notifier-shogun: put modshogun into a package19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * b5867c1 / src/interfaces/modular/SGBase.i: https://github.com/shogun-toolbox/shogun/commit/b5867c13dc42f4d306d3b0b84135c5bed3f3fc7d19:49
shogun-notifier-shogun: add custom reduce_ex and reconstructor magic functions for (un)pickling19:49
shogun-notifier-shogun:19:49
shogun-notifier-shogun: Whenever an object is of type SGObject we store 'modshogun.Type' as19:49
shogun-notifier-shogun: type instead of the class type. The reconstructor is patched to cope19:49
shogun-notifier-shogun: with that. This will change the pickle format of any python program19:49
shogun-notifier-shogun: Soeren Sonnenburg :master * 3f9fd25 / src/interfaces/modular/SGBase.i: https://github.com/shogun-toolbox/shogun/commit/3f9fd25d389f270705b2b5935079940746e31f0719:49
shogun-notifier-shogun: Soeren Sonnenburg :master * 4da0570 / doc/md/QUICKSTART.md: https://github.com/shogun-toolbox/shogun/commit/4da05703858b83c9e67bd3e9e602dd1396ee039019:50
shogun-notifier-shogun: Merge pull request #1867 from tklein23/develop19:50
shogun-notifier-shogun:19:50
shogun-notifier-shogun: Added first draft of "quickstart" instructions to documentation.19:50
shogun-notifier-shogun: Soeren Sonnenburg :master * 6dca06f / README.md: https://github.com/shogun-toolbox/shogun/commit/6dca06f6c5507089f4512777662095a923e6151f19:50
shogun-notifier-shogun: link quickstart19:50
shogun-notifier-shogun: Soeren Sonnenburg :master * 053a248 / / (112 files): https://github.com/shogun-toolbox/shogun/commit/053a248645098486d9c455515b362805addf8a4019:50
shogun-notifier-shogun: Merge branch 'release/3.2.0'19:50
shogun-notifier-shogun: Soeren Sonnenburg :master * 94c92de / : https://github.com/shogun-toolbox/shogun/commit/94c92de372931c84558e12455dc06b4d83660bf219:50
shogun-notifier-shogun: Merge branch 'master' of github.com:shogun-toolbox/shogun19:50
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shogun-buildbotbuild #120 of deb4 - python3 is complete: Failure [failed python modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/120  blamelist: Soeren Sonnenburg <sonne@debian.org>20:25
@sonney2kiglesiasg, voila - release online20:28
@sonney2kanybody willing to write some news?20:28
@sonney2kbesser82, feel free to RPM is20:28
@sonney2kit20:28
@iglesiasgI am putting the gsoc faq online20:28
@sonney2kiglesiasg, HeikoS1 please announce 3.2.0 if you have time20:30
HeikoS1sonney2k: should I write some notes?20:32
HeikoS1I can do that20:32
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@sonney2kHeikoS1, I blogged about thsi and updated mloss.org / freshmeat.net - so yes please - mailinglist and iglesiasg  please twitter too!20:43
@iglesiasgsonney2k, where is the post? I didn't find it on your website nor in planet20:45
@iglesiasgHeikoS1, sonney2k retweet please20:47
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HeikoS1sonney2k, iglesiasg I sent release notes to the mailing list20:48
HeikoS1feel free to re-use20:49
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@iglesiasgHeikoS1, cool, thanks!20:49
@iglesiasgHeikoS1, btw, the gsoc faq is really great20:49
@iglesiasglot of very useful info for prospective students20:49
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HeikoS1iglesiasg: glad you like it20:54
HeikoS1ill be back later, see you20:54
bumblebee_the ideas page has turned out to be brilliant20:54
bumblebee_!!20:54
HeikoS1iglesiasg: oh could you add the gsoc 2014 to the main page replacing gsoc2013? :)20:54
bumblebee_looking forward to learn a lot, thanks a lot20:55
HeikoS1bumblebee_: thanks!20:55
@iglesiasgHeikoS1, the part of gsoc 2013 was a huge success I guess?20:55
HeikoS1iglesiasg:  yeh20:55
@iglesiasgHeikoS1, all right, will do something20:55
HeikoS1iglesiasg: also feel free to reuse the release notes on the mailing list20:56
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shogun-buildbotbuild #121 of deb4 - python3 is complete: Failure [failed test python modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/121  blamelist: Parijat Mazumdar <mazumdarparijat@gmail.com>, Orion Poplawski <orion@nwra.com>, Soeren Sonnenburg <sonne@debian.org>, iglesias <fernando.iglesiasg@gmail.com>, Bj?rn Esser21:10
shogun-buildbot<bjoern.esser@gmail.com>, Thoralf Klein <thoralf.klein@zib.de>, lambday <heavensdevil6909@gmail.com>, Viktor Gal <vigsterkr@gmail.com>, Heiko Strathmann <heiko.strathmann@gmail.com>, tklein23 <tklein23@users.noreply.github.com>, Viktor Gal <viktor.gal@maeth.com>, Thoralf Klein <thoralf@fischlustig.de>, Sergey Lisitsyn <lisitsyn.s.o@gmail.com>, Fernando Iglesias21:10
shogun-buildbot<fernando.iglesiasg@gmail.com>, Roman Votyakov <votjakovr@gmail.com>21:10
wikingheeeey :D21:28
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travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1905744421:31
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wikingok i've created this: https://github.com/shogun-toolbox/shogun/releases/tag/shogun_3.2.021:34
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travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1905744521:35
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wikingbtw the good feature of github as that we could attach there are the precompiled binaries21:36
wikingbesser82: do u maybe have the rpms of this release?21:36
wikingsonney2k: if u happen to have .deb we could add them there21:36
shogun-notifier-shogun: Soeren Sonnenburg :develop * 5d0395a / NEWS: https://github.com/shogun-toolbox/shogun/commit/5d0395a26d3798fc2c31ed31e8cd7b97506d517a21:43
shogun-notifier-shogun: add empty news boiler plate21:43
@sonney2kwiking, no nothing there yet21:44
@sonney2kwiking, is there any chance we can disable commits to master? I accidentally pushed from master twice in the last 7 days *sigh*21:47
@sonney2kiglesiasg, wiking, lisitsyn - have a look http://fatbot.shogun-toolbox.org:123421:48
@sonney2kpickle27 did some website mockups21:49
@iglesiasgfinally, top-down menus!! yeaah21:50
@sonney2kiglesiasg, yeah I also like the menus :)21:51
wikingyey bootstrap :D21:52
@sonney2kiglesiasg, can you format the gsoc intro stuff a bit better? And maybe put all that info in an extra tab - it is too long21:55
@sonney2kiglesiasg, no one will find our ideas and that might cause us trouble in the selection process!21:55
@sonney2kiglesiasg, so just a brief how to become a gsoc student with shogun and a link21:55
@iglesiasgsonney2k, I am pushing the html to the repo soon and going to bed already21:56
@iglesiasgsonney2k, I am not sure how you want either. I thought about that it might be a bit long and the ideas a lot below but I finally decided it was the best idea21:57
@iglesiasgsonney2k, if you prefer it in the main GSoC 2014 page I can do that now21:57
@iglesiasgsonney2k, but then none will find the faq... unless we link to it on the main page21:57
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@sonney2kiglesiasg, yes link it22:02
@sonney2kiglesiasg, but it is too long to be in ideas22:02
@iglesiasgsonney2k, can you put the link on the homepage please? I am going to add in the description at the very top a link to the ideas22:03
@iglesiasglike "welcome[...] if you want the ideas directly press here"22:03
@sonney2kiglesiasg, no please do so22:04
@iglesiasgsonney2k, I never modified the homepage so I should look into it. That will wait until tomorrow22:05
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@iglesiasgall right, good night!22:15
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* sonney2k sigh22:18
@sonney2kthen I better remove this for now22:18
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pickle27hey guyse!22:31
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@sonney2kpickle27, hey22:34
@sonney2kpickle27, twitter about the release and our gsoc ideas list please!22:35
pickle27will do!22:35
@sonney2kpickle27, actually gsoc ideas only22:36
@sonney2krelease was done already :)22:36
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travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1906468622:36
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pickle27will do!22:36
pickle27did anyone take a look at the site update>22:37
@sonney2kpickle27, yes all22:38
@sonney2kpickle27, everyone likes the menus22:38
@sonney2kpickle27, so please continue :D22:38
pickle27awesome thats good news22:38
pickle27sonney2k: its actually almost ready to deploy I think23:05
pickle27one more session of hacking just to check everything23:06
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Koen__I see the new release on the website now23:23
Koen__am I late for the Stammtisch?23:24
pickle27I think most people left23:24
pickle27I missed it too :(23:24
Koen__ah well, better luck next week23:26
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pickle27sonney2k: still around?23:46
--- Log closed Tue Feb 18 00:00:03 2014

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