IRC logs of #shogun for Tuesday, 2017-02-28

--- Log opened Tue Feb 28 00:00:44 2017
@wikingSinjan, please use the mailing list00:00
SinjanOkay.00:04
SinjanI sent a mail to the mailing list requesting to join.00:05
@wikingSinjan, https://nn7.de/cgi-bin/mailman/listinfo/shogun-list00:06
CaBasonney2k: letsecrypt is not as bad as it looks :P00:23
@wikingCaBa, ?:)00:39
@wikingit's pretty good i must say00:39
CaBawiking: yes. so no reason to use cacert signed certificates for nn7.de ;)00:39
@wikingCaBa, hahaha dont ask me :)00:40
@wikingCaBa, shogun uses letsencrpt00:40
@wiking*00:40
CaBahttps://shogun-toolbox.org/ also uses CAcert00:40
@wikinghahah i dont touch the main website00:41
@wiking:D00:41
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Ankit_Hi, is this the best room to talk about GSOC 2017 or is there any other dedicated rooms for that ?05:45
@sukeyNew Commit "Add terminate atomic flag for parsing thread in InputParser06:31
@sukeythis allows graceful stopping of the parsing thread06:31
@sukeyRemove pthread implementation from InputParser06:31
@sukeyfinetune the memory ordering of the atomic counter in RefCount" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/63a8e078b1a6d80bfae5c5ac8610414e56ea981d06:31
@wikingAnkit_, yes06:42
@wikingthis is the best place06:42
@wikingAnkit_, or use the mailing list06:42
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20606640806:53
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@wikingmikeling|afk, ping are you here?07:40
@wikingmikeling|afk, have you seen these warnings: http://pastebin.com/R8GcwqHp07:41
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shaunak Hi I'm new here08:02
shaunaki want to contribute in shogun08:03
shaunakanyone please help me from where to start08:03
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@wikingshaunak, please check our wiki08:09
@wikingthere's plenty information about how to get started08:09
shaunakthanks08:10
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lisitsynwiking: so have you installed?08:32
@wikingwho?08:32
@wiking:D08:32
@wikingtf08:32
@wikingyes08:32
lisitsynwiking: the yandex browser08:32
lisitsyn:D08:33
@wikinglol08:33
lisitsynwhat are you waiting for08:33
@sukeyNew Commit "Fix typo in Distance.cpp in omp initialisation08:35
@sukeythis caused serious data race condition" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/caa00092c5dd05f78f06011e26f2481c1adfbd4f08:35
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mikelingwiking: I'm working on it, will commit a pr to fix it08:35
mikelingASAP08:35
@wikingk08:35
@wikingthnx08:35
@sukeyNew Commit "Fix typo in Distance.cpp in omp initialisation08:36
@sukeythis caused serious data race condition" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/c799c934b030543db712fa0dadbe356102b053b108:36
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@sukeyNew Commit "Fix typo in Distance.cpp in omp initialisation08:45
@sukeythis caused serious data race condition" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/aa0d873cf5e03fedc9c2d10e4dc850846ca2cda008:45
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@sukeyIssue #3663 "Implement InputParser and ParseBuffer lock-free" opened by vigsterkr - https://github.com/shogun-toolbox/shogun/issues/366308:59
@sukeyIssue #3663 "Implement InputParser and ParseBuffer lock-free" vigsterkr added label: "Cleanups" - https://github.com/shogun-toolbox/shogun/issues/366308:59
@sukeyIssue #3663 "Implement InputParser and ParseBuffer lock-free" vigsterkr added label: "entrance" - https://github.com/shogun-toolbox/shogun/issues/366308:59
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20608726009:31
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Ankit_So I am interested to apply for GSOC 2017 for shogun. However, does being an expert in C++ a requirement ? I saw a few projects on the GSOC 2017 page that can be done using python.09:34
@wikingAnkit_, yes but please read about what are the minimum requirements for considering any gsoc application09:43
@sukeyPull Request #3664 "fix build warning for all KNNSolvers"  opened by MikeLing - https://github.com/shogun-toolbox/shogun/pull/366409:53
mikelingwiking: Hi, if I want to apply GSoC, do I need to fill a form or write a GSoC proposal for the project I want to apply?09:58
@wikingyes09:58
mikelingso I haven't see something like proposal template or apply example like that on wiki page. could you please give me an reference if we have it?09:59
mikelingthank you :)10:00
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@sukeyNew Commit "Fix typo in Distance.cpp in omp initialisation10:11
@sukeythis caused serious data race condition" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/11c007f9b4af997a24eec757208ad4bf598e9e3510:11
mikelingBTW, I got a bunch of mmd related error when I build code on os x https://pastebin.mozilla.org/898057310:14
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AmilKhareHello10:44
AmilKhareHello everyone !10:44
AmilKhareI want to start contributing , can anyone help me start ?10:46
@sukeyNew Commit "Fix typo in Distance.cpp in omp initialisation10:51
@sukeythis caused serious data race condition" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/5f3e59919b884490de8a003318a44f128bbec3aa10:51
@wikingAmilKhare, please check the wiki10:53
@wikingall the information is there10:53
@wikingmikeling, yeah ... wait like10:53
@wiking30 mins10:53
@wikingand i think i have a fix for those things10:53
@wikingand then you can rebase on develop10:53
AmilKharewiking Okay will check out , Thanks !10:56
@wikingAmilKhare, nw11:00
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20611687711:46
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AmilKhare so will proposals be accepted if I am not currently a contributor?12:46
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AmilKhareI tried looking at entrance tasks but I seem lost.13:17
@wikingAmilKhare, no we only consider proposals that has done couple of entrance tasks13:17
@HeikoSAmilKhare: why are you lost?13:20
@HeikoSwhat do you mean?13:20
@HeikoSYou dont understand a task?13:20
AmilKhareYes you can say that , I mean I just don't understand what has to be done13:21
AmilKhareOr rather How it is to be done13:21
AmilKhareI am new to Github so sorry for such idiotic questions13:21
@HeikoSAmilKhare: we can only help you if you ask specific questions, which the above is not13:22
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@HeikoSAmilKhare: there is dozens of tasks that are extremely straight forward, i.e. very small patches13:22
@HeikoSso feel free to ask about anything specific13:23
AmilKharehttps://github.com/shogun-toolbox/shogun/issues/3492 For example this task13:23
@HeikoSyes?13:24
AmilKhareDo I have to just do a simple replace?13:24
@sukeyIssue #3492 "rename interface cmake switches" closed by karlnapf - https://github.com/shogun-toolbox/shogun/issues/349213:24
@HeikoSAmilKhare: yes that was all13:25
AmilKhareIt's closed now?13:25
@HeikoSI closed it though because it is super low priority13:25
@HeikoSwe will re-open that for a future release13:25
@HeikoSfor now, the names can stay13:25
@HeikoSlisitsyn: you around?13:25
lisitsynhey13:25
@HeikoSlisitsyn: you had a look at the list of flats?13:26
lisitsynHeikoS: yes I clicked a few thumbs up13:26
@HeikoSAmilKhare: maybe write an example, port a python example to the meta example system13:26
@HeikoSthere is a task for that and it is mentioned in the wiki many times13:26
@HeikoSlisitsyn: didnt see where13:26
@HeikoSnot in email?13:26
lisitsynHeikoS: no just in the list13:27
lisitsyndon't it work this way?13:27
@HeikoSlet me check13:27
AmilKhareThe porting examples to META examples one?13:27
@HeikoSAmilKhare: yes, see above13:27
lisitsynHeikoS: aren't these like/dislike buttons just for that?13:28
@HeikoSlisitsyn: ah yeah I see now13:28
@HeikoSsigh13:28
@HeikoSthe others just replied in email13:28
@HeikoSok let me do majority vote BY HAND13:28
lisitsynHeikoS: I guess bellevue13:28
AmilKhareHeikos: Thanks , I will have a look at the undocumented ones.13:32
lisitsynHeikoS: it is one bed but we will keep it for you and wiking13:33
lisitsyn:P13:34
@HeikoSlisitsyn: yeah one bed two couches13:34
@HeikoSI dont care13:34
@HeikoSdid that in SF, but I can also bring my sleeping bag/mat13:34
lisitsynHeikoS: your gf you're shopping with?13:34
lisitsyn:D13:34
@HeikoShaha ;)13:34
@HeikoSlisitsyn: so btw13:36
@HeikoSgsoc is 400 applications13:36
@HeikoS200 get in13:36
@HeikoSnot that bad13:36
@HeikoS18% new orgs13:36
lisitsynHeikoS: yeah somehow google likes us13:36
@HeikoSI guess it works what we do13:36
lisitsynwe're veteran org13:37
lisitsynHeikoS: like zz top13:37
@HeikoSlisitsyn: you have a beard yet?13:49
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@HeikoSlisitsyn: any objection about the listing I sent?13:49
@HeikoSwiking: ^13:49
lisitsynHeikoS: no beard :(13:49
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@sukeyNew Commit "Merge branch 'feature/Cpp11' into develop" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/be8e005da18d5bb6f6383013158dd0fc4d5d20ba13:58
@wikingvoila13:58
@wikingHeikoS, one bed?13:58
@wikingnot two?13:58
@wikingHeikoS there's no way we can find a 2 bed + couch place13:59
@wikingmikeling, ok so now just rebase your branch and pull develop13:59
@wikingCaBa, can you rebase https://github.com/shogun-toolbox/shogun/pull/366014:00
sanujHeikoS, wiking, lisitsyn helloo!!14:01
sanujAre you guys going to SF?14:01
lisitsynwiking: HeikoS: these two couches look ok for me14:02
lisitsynhoneymoon thing for you guys14:02
lisitsyn:D14:02
lisitsynsanuj: hey14:02
lisitsynsanuj: its zurich14:02
sanujGSoC meetup in Zurich this time?14:04
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@wikingHeikoS, yeah but in sf we did14:08
@wiking2 double beds and 1 couch14:08
@wikingnot 1 double bed and a couch14:08
@wiking;)14:08
shogun-buildbotbuild #146 of trusty - libshogun - viennacl is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/trusty%20-%20libshogun%20-%20viennacl/builds/14614:14
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shogun-buildbotbuild #128 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/12814:27
Ankit__I am getting 404 on the chat log link mentioned here http://www.shogun-toolbox.org/irclogs/14:27
mikelingwiking: hi, I got this error after rebase and rebuild it https://pastebin.mozilla.org/898058414:28
@wikingmmm that is strange14:29
@wikingwell the best thing you could do14:29
@wikingremove the whole build directory14:29
@wikingand do the cmake14:29
@wikingand everything from the beginning14:29
@wiking:S14:29
@sukeyPull Request #3660 "Reintegrate parallel crossvalidation"  synchronized by lkuchenb - https://github.com/shogun-toolbox/shogun/pull/366014:32
AmilKhareArea all the undocumented examples in the shogun/examples/undocumented/python_modular directory need to be converted to Meta examples?14:35
AmilKhare*Are14:35
mikelingwiking: hmmm, nothing changed. And here is my cmake output https://pastebin.mozilla.org/898058514:38
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@HeikoSAmilKhare: yes, as the readme says14:43
@HeikoSwiking: btw this warning is the reason why I didnt include the headers for libshogun target14:44
@HeikoSWarning: Source file "/Users/mikeling/shogun/build/src/shogun/base/class_list.cpp" is listed multiple times for target "libshogun".14:44
AmilKhareIs there any way to test my Meta - .sg file?14:48
@HeikoSAmilKhare: check the developer readme14:49
@HeikoSand examples readme14:49
@HeikoSit is explained in detail in there14:49
@HeikoSwiking: just checking the stuff you did in the feature branch .... kudos!14:49
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20616817314:50
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CaBa"No output has been received in the last 10m0s, this potentially indicates a stalled build or something wrong with the build itself." <- when does that happen?15:20
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TirthaHello everyone, I'm Tirtha from India. Computer Science undergrad and ML enthusiast15:52
TirthaFound Shogun and read  the work you all are doing. Would love to contribute.15:53
TirthaAny suggestions from where I can start?15:54
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@wikingCaBa, ping16:11
@wikingmikeling, osx right?16:11
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CaBawiking: reping16:23
CaBaaka ping16:23
CaBa:P16:23
CaBa*pong16:23
@wikingCaBa, rebase the pr16:25
CaBawiking: again?16:25
@wikingCaBa, when did you rebase the last time? :D16:25
CaBa14:30:15 <@sukey> Pull Request #3660 "Reintegrate parallel crossvalidation"  synchronized by lkuchenb - https://github.com/shogun-toolbox/shogun/pull/366016:25
@wikingah16:26
@wikinglemme see those errors16:26
@wikingsorry missed it16:26
CaBawiking: travis just died in one build16:26
CaBa15:18:36 < CaBa> "No output has been received in the last 10m0s, this potentially indicates a stalled build or something wrong with the build itself." <- when does that happen?16:26
@wikingokok that is bs16:26
@wikinglemme kick that job off again16:26
@wikingbut this seems to be working nicely16:26
@wikingbtw have u tested that stupid ipython notebook ?D:16:27
@wiking:D16:27
@wikingok restarted https://travis-ci.org/shogun-toolbox/shogun/jobs/20617794416:27
@wikinglets see what is the out16:27
CaBano not yet16:27
CaBacan't do it right now, maybe tonight16:28
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@wikingkk no wories16:30
@wiking*worries16:30
@wikingimo this is going to be merged16:30
@wikingand then in worst case we do a post fix16:30
@wiking:D16:30
CaBa;)16:30
@wikingi mean come on16:31
@wikingit passes now everywhere16:31
@wiking:D16:31
@wikingso fuck that notebook16:31
@wiking:D16:31
CaBa#3647 can be closed?16:31
@wikingCaBa, imo yeah16:32
@wikingbut you should test16:32
@wikingi haven't tried gcc 6.x16:32
CaBai mean have you built the latest?16:32
CaBaok, i'll build on gcc quick16:32
@wikingCaBa, i've built the latest16:32
@wikingeven more buildbot build a lot of stuff as well16:32
@wiking;D16:32
@wikingbut none of that has gcc 6.x16:32
CaBathere is a buildbot for mac?16:32
@wikingnoup we dont have access to a mac16:33
@wikingonce i put together16:33
@wikinga shitty16:33
@wikingosx86 mac16:33
@wikingin a CM16:33
@wiking:D16:33
@wikingi mean VM16:33
CaBaReceiving objects:  99% (154070/155191), 58.17 MiB | 145.00 KiB/s16:34
CaBagit over http proxy is so much fun...16:34
@wiking:>16:35
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CaBawiking: builds fine with gcc. some ctests fail, i usually never run them, is that "normal"?16:42
CaBahttps://gitlab.unique-internet.de/snippets/1416:44
@wikingi have 2 failing16:44
@wikingoooooooh16:44
@wikingcan you do this16:44
@wikingctest -R libshogun-classifier_multiclass_ecoc -VV16:45
@wikingand paste the output16:45
CaBawiking: doesn't find the data files16:46
CaBawiking: https://gitlab.unique-internet.de/snippets/1516:46
CaBawiking: i didn't "make install" anywhere. maybe that's why?16:47
@wikingCaBa, did you ever do16:48
@wikinggit submodule update --init ?:)16:48
CaBaehm. no :)16:48
@wikingok so that's why16:48
@wikingok no worries16:48
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@wikingbut then its all good16:48
@wikinglets close the bug16:48
@sukeyIssue #3647 "Build fails" closed by lkuchenb - https://github.com/shogun-toolbox/shogun/issues/364716:49
CaBawiking: are there any other submodules i'm generally missing? :P16:49
CaBadebian and doc... okay, i guess i'll survive16:50
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AmilKhareWhen I try to cd to the example directory it shows no such directory , I am on MacOS. Sorry for the noob question though17:05
AmilKhareI have installed shogun , on terminal it runs perfectly17:05
@wikingthis is a rather odd question17:06
@wikingi think you should get more familiar17:07
@wikingwith your operating system/terminal17:07
@wikingCaBa, ok i'm merging https://github.com/shogun-toolbox/shogun/pull/366017:10
@wikingit's green17:10
@wikingand we'll see tomorrow morning17:10
@wikingwtf is with the notebook17:10
@wiking:)17:10
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@sukeyPull Request #3660 "Reintegrate parallel crossvalidation"  merged by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/366017:10
@sukeyNew Commit "Merge pull request #3660 from lkuchenb/feature/parallel_xval_reintegration17:11
@sukeyReintegrate parallel crossvalidation" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/277aeb7ca6a0f21c7c9f672e49472f5bbd9f229a17:11
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shogun-buildbotbuild #131 of deb4 - python3 is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/131  blamelist: Saurabh7 <saurabh.mahindre@gmail.com>17:13
@wikingmmm17:14
@wikingwhyunowork17:14
@wikingah cmake :)17:14
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shogun-buildbotbuild #101 of CentOS7 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/CentOS7%20-%20libshogun/builds/101  blamelist: Viktor Gal <vigsterkr@gmail.com>, Saurabh7 <saurabh.mahindre@gmail.com>17:21
@wikingCaBa, ^ HAHAHAHA17:21
CaBa*facepalm*17:21
@wikingok so this needs fixing17:22
@wiking:)17:22
CaBawiking: travis doesn't run tests?17:24
@wikingCaBa, it does but you know17:24
@wikingiit's a vm17:24
@wikingwith barely 2 threads :)17:24
CaBa1-thread? :P17:24
@wikingso i mean i'm not surprised17:24
@wikingthat things like this17:25
CaBahow do i run this test manually?17:25
@wikingdoes not come out17:25
@wikingctest -R unit-CrossValidation_multithread17:25
@wikingif you ran cmake with17:25
@wiking-DENABLE_TESTING=ON17:25
CaBai have to 'make test' before?17:26
CaBadoesn't make test just run them all?17:26
@wikinguse ninja17:26
@wikingand make shogun-unit-test17:26
@wikingi think it runs all tests17:26
@wikingbut if you just wanna run this one17:26
@wikingthen do ctest -R unit-CrossValidation_multithread17:26
CaBawell it doesn't find that test for me... that's why i asked. i'll try after 'make test'17:26
@wikingCaBa, u dont have -DENABLE_TESTING=ON17:27
@wikingi suppose17:27
CaBai just turned it on17:27
@wikinghave you recompiled?17:27
@wikingi.e. make shogun-unit-test17:27
@wiking?17:27
OXPHOSthere was a -DENABLE_META_EXAMPLES17:27
@wikingmmm that's other stuff17:27
@wikingthis one is unit test17:27
OXPHOSoh i see17:27
CaBawiking: no but make test works now. i guess it depends on building the tests and does so...17:28
CaBaok, building the shogun-unit-test target now...17:28
OXPHOSHeikoS I don't think I have trouble rebasing linalg feature branch but I have problem compiling CWrapped* classes. http://pastebin.com/Vv3qVq2m17:29
OXPHOSclang --version Apple LLVM version 7.0.217:29
@wikingOXPHOS, mmm you'll have to rebase again17:29
@wikingjust merged a really bug branch17:29
@wiking:D17:29
@wikingsorry17:29
OXPHOSwiking: the result[k] one?17:29
@wikingyeah17:29
@wikingbt17:29
OXPHOSthat was the 2nd problem..17:29
@wikingwhat's your rebase command exactly?17:29
@wikinggit rebase <?>17:30
OXPHOSwiking: I did in my forked repo. just git rebase upstream/develop in my linalg_rebase branch17:30
@wikingmmm ok17:30
@wikingthat should be good17:30
@wikingif you did a git fetch before that17:30
OXPHOSwiking: yep17:30
@wikingCaBa, heads up17:31
CaBawiking: hm?17:31
@wikingi cannot reproduce it on debian jessie with 8 cores17:31
@wiking:)17:31
CaBawiking: not sure thats a heads _up_17:31
@wikingoh no17:31
@wikingi did17:31
CaBawiking: parallel bugs can be tricky to reproduce17:31
@wikingyep17:32
@wikingvalgrind17:32
@wiking:)17:32
CaBahappy waiting17:32
CaBawiking: does nthreads autodetect work on mac in the meantime?17:36
CaBawiking: or will the test always run single-thread for me?17:37
@wikingCaBa, yep17:39
@wikingit wasn't working on linux17:39
@wikingon mac it always worked17:39
CaBawiking: hm. how many times did you have to run it to break it?17:39
@wikinglot17:40
@wiking:)17:40
CaBawiking: ok, fails here, too17:41
CaBaactually on the 24-core mac pretty often :P17:41
CaBa*sigh*17:43
@wikingimo only something like valgrind can help debug this17:43
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@wikingCaBa, :D17:51
@wikingmy guess17:52
@wikingCCrossValidationOutput* current=(CCrossValidationOutput*)17:52
@wikingm_xval_outputs->get_first_element();17:52
@wikingwhere17:52
@wikinginline CSGObject* get_first_element()17:52
@wiking{17:52
@wikingif (first != NULL)17:52
@wiking{17:52
@wikingcurrent = first;17:52
@wikingif (delete_data)17:52
@wikingSG_REF(current->data);17:52
@wikingreturn current->data;17:52
@wiking}17:52
@wikingelse17:52
@wikingreturn NULL;17:52
@wiking}17:52
CaBanot thread safe?17:52
CaBatry move that down in the crit block17:54
CaBa?17:54
@wikingyeah taht's my guess17:54
@wikingbut this should be using atomics17:54
@wikingall over the place17:54
@wikinginstead of critical17:55
@wikinganyhow17:55
@wikinglet's see17:55
@wikingbtw17:55
@wikingfor me it's not easy to reproduce17:55
@wikingso if you could test as well17:56
@wikingthat'd be great17:56
CaBawiking: still fails i think17:58
@wiking:<17:58
CaBaif i'm doing the right thing here :P17:58
@wikingyep17:59
@wikingit does17:59
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20623289318:01
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@sukeyPull Request #3661 "Port Inference.cpp to use OpenMP"  synchronized by abhinavrai44 - https://github.com/shogun-toolbox/shogun/pull/366119:51
@sukeyPull Request #3662 "Port DistanceMachine.cpp to use OpenMP"  synchronized by abhinavrai44 - https://github.com/shogun-toolbox/shogun/pull/366219:51
@sukeyPull Request #3650 "Remove pthread header from SVMLightOneClass"  synchronized by abhinavrai44 - https://github.com/shogun-toolbox/shogun/pull/365019:53
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@sukeyPull Request #3665 "Fix `make cookbook` when certain cookbooks are guarded"  opened by geektoni - https://github.com/shogun-toolbox/shogun/pull/366521:58
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